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Bejcek LP, Eli OS, Kapkayeva DM, Nafie J, Beutler JA, Gallicchio E, Sackett DL, Murelli RP. Deconstruction of Desacetamidocolchicine's B Ring Reveals a Class 3 Atropisomeric AC Ring with Tubulin Binding Properties. J Org Chem 2025. [PMID: 40422813 DOI: 10.1021/acs.joc.5c00284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2025]
Abstract
Colchicine is one of the oldest known microtubule-targeting agents and also represents a classic example of axial chirality and atropisomerism in medicine. This is because colchicine's axially chiral methoxytropone-trimethoxybenzene (called the AC ring) is directly responsible for tubulin binding and is thermodynamically set into the requisite aR form by a point chiral acetamido group on its B ring. Indeed, desacetamidocolchicine (DAAC), a colchicine analogue without the acetamido group, racemizes within minutes. Herein, we describe the synthesis as well as physical and biological characterization of a series of AC ring-containing molecules that represent B-ring further deconstructed variants of DAAC. These studies revealed a novel analogue with an AC ring that is highly stable to epimerization based not on thermodynamic stabilization but rather a high rotational barrier energy. Profiling and characterization of the dihedral angles were carried out computationally and experimentally using vibrational circular dichroism, demonstrating that the ground state dihedral angles of the new molecules differ significantly from those of colchicine. However, despite this difference, the molecule retained antiproliferative, tubulin-binding, and tubulin polymerization inhibitory activity.
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Affiliation(s)
- Lauren P Bejcek
- PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
- Department of Chemistry and Biochemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
| | - Orugbani S Eli
- PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
- Department of Chemistry and Biochemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
| | - Diana M Kapkayeva
- PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
| | - Jordan Nafie
- Biotools, Inc., 17546 Bee Line Highway, Jupiter, Florida 33478, United States
| | - John A Beutler
- Molecular Targets Program, National Cancer Institute, National Institutes of Health. 1050 Boyles Street, Frederick, Maryland 21702, United States
| | - Emilio Gallicchio
- PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
- Department of Chemistry and Biochemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
- The Graduate Center of the City University of New York, PhD Program in Biochemistry, New York, New York 10016, United States
| | - Dan L Sackett
- Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, 1 Center Dr, Bethesda, Maryland 20892, United States
| | - Ryan P Murelli
- PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
- Department of Chemistry and Biochemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
- The Graduate Center of the City University of New York, PhD Program in Biochemistry, New York, New York 10016, United States
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Baucom JC, Agyemang NB, Trelles T, Gallicchio E, Murelli RP. Studies on the Configurational Stability of Tropolone-Ketone-, Ester-, and Aldehyde-Based Chiral Axes. J Org Chem 2024; 89:541-552. [PMID: 38133833 DOI: 10.1021/acs.joc.3c02286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2023]
Abstract
Recent studies have revealed that tropolone-amide aryl C-C(O) rotational barriers are dramatically higher than those of analogous benzamide-based systems, and as a result, they have an increased likelihood of displaying high configurational stability. Studies on other tropolone-based chiral axes are important to assess the generality of this phenomenon. Herein, we describe a series of studies on the rotational barriers of tropolone-ketone, tropolone-ester, and tropolone-aldehyde chiral axes. These studies are complemented with computational modeling of the dynamics of these and analogous benzenoid variants to illuminate the impact that tropolone may have on aryl-C(O) configurational stability.
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Affiliation(s)
- John-Charles Baucom
- Department of Chemistry and Biochemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
- PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
| | - Nana B Agyemang
- Department of Chemistry and Biochemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
- PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
| | - Theresa Trelles
- Department of Chemistry and Biochemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
| | - Emilio Gallicchio
- Department of Chemistry and Biochemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
- PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
- PhD Program in Biochemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
| | - Ryan P Murelli
- Department of Chemistry and Biochemistry, Brooklyn College, The City University of New York, Brooklyn, New York 11210, United States
- PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
- PhD Program in Biochemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
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3
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Steparuk EV, Meshcheryakova EA, Viktorova VV, Ulitko MV, Obydennov DL, Sosnovskikh VY. Oxidative Ring-Opening Transformation of 5-Acyl-4-pyrones as an Approach for the Tunable Synthesis of Hydroxylated Pyrones and Furans. J Org Chem 2023; 88:11590-11602. [PMID: 37504952 DOI: 10.1021/acs.joc.3c00907] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
Abstract
A selective and tunable approach for oxidation of 4-pyrones has been developed via ring-opening transformations leading to various hydroxylated oxaheterocycles. The first step of the strategy includes the base-catalyzed epoxidation of 5-acyl-4-pyrones in the presence of hydrogen peroxide for the effective synthesis of pyrone epoxides in high yields. The epoxides bearing the CO2Et group are reactive molecules that can undergo both pyrone and oxirane ring-opening via deformylation to produce hydroxylated 2-pyrones or 4-pyrones. The acid-promoted transformation led to 3-hydroxy-4-pyrones (24-76% yields), whereas the K2CO3-catalyzed ring-opening process of 2-carbethoxy-4-pyrone epoxides proceeded as an attack of alcohol at the C-3 position bearing the CO2Et group to give functionalized 6-acyl-5-hydroxy-2-pyrones (27-87% yields). The base-catalyzed reaction of 2-aryl-4-pyrone epoxides was followed by ring contraction and the dearoylation process to produce 3-hydroxyfuran-2-carbaldehydes in 42-80% yields. The transformation of 3-aroylchromone epoxides led to flavonols and 3-hydroxybenzofuran-2-carbaldehyde in the acidic and basic conditions, respectively. The prepared hydroxylated heterocycles demonstrated high reactivity for further transformations and low cytotoxicity and are promising fluorophores or UV filters.
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Affiliation(s)
- Elena V Steparuk
- Institute of Natural Sciences and Mathematics, Ural Federal University, 51 Lenina Ave., 620000 Ekaterinburg, Russian Federation
| | - Ekaterina A Meshcheryakova
- Institute of Natural Sciences and Mathematics, Ural Federal University, 51 Lenina Ave., 620000 Ekaterinburg, Russian Federation
| | - Viktoria V Viktorova
- Institute of Natural Sciences and Mathematics, Ural Federal University, 51 Lenina Ave., 620000 Ekaterinburg, Russian Federation
| | - Maria V Ulitko
- Institute of Natural Sciences and Mathematics, Ural Federal University, 51 Lenina Ave., 620000 Ekaterinburg, Russian Federation
| | - Dmitrii L Obydennov
- Institute of Natural Sciences and Mathematics, Ural Federal University, 51 Lenina Ave., 620000 Ekaterinburg, Russian Federation
| | - Vyacheslav Y Sosnovskikh
- Institute of Natural Sciences and Mathematics, Ural Federal University, 51 Lenina Ave., 620000 Ekaterinburg, Russian Federation
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2-(2-(Dimethylamino)vinyl)-4 H-pyran-4-ones as Novel and Convenient Building-Blocks for the Synthesis of Conjugated 4-Pyrone Derivatives. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27248996. [PMID: 36558129 PMCID: PMC9788530 DOI: 10.3390/molecules27248996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/20/2022] [Revised: 12/13/2022] [Accepted: 12/13/2022] [Indexed: 12/24/2022]
Abstract
A straightforward approach for the construction of the new class of conjugated pyrans based on enamination of 2-methyl-4-pyrones with DMF-DMA was developed. 2-(2-(Dimethylamino)vinyl)-4-pyrones are highly reactive substrates that undergo 1,6-conjugate addition/elimination or 1,3-dipolar cycloaddition/elimination followed by substitution of the dimethylamino group without ring opening. This strategy includes selective transformations leading to conjugated and isoxazolyl-substituted 4-pyrone structures. The photophysical properties of the prepared 4-pyrones were determined in view of further design of novel merocyanine fluorophores. A solvatochromism was found for enamino-substituted 4-pyrones accompanied by a strong increase in fluorescence intensity in alcohols. The prepared conjugated structures demonstrated valuable photophysical properties, such as a large Stokes shift (up to 204 nm) and a good quantum yield (up to 28%).
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Schiavone DV, Kapkayeva DM, Li Q, Woodson ME, Casals AG, Morrison LA, Tavis JE, Murelli RP. Synthesis of Polyoxygenated Tropolones and their Antiviral Activity against Hepatitis B Virus and Herpes Simplex Virus-1. Chemistry 2022; 28:e202104112. [PMID: 34984767 PMCID: PMC8858858 DOI: 10.1002/chem.202104112] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Indexed: 11/06/2022]
Abstract
Polyoxygenated tropolones possess a broad range of biological activity, and as a result are promising lead structures or fragments for drug development. However, structure-function studies and subsequent optimization have been challenging, in part due to the limited number of readily available tropolones and the obstacles to their synthesis. Oxidopyrylium [5+2] cycloaddition can effectively generate a diverse array of seven-membered ring carbocycles, and as a result can provide a highly general strategy for tropolone synthesis. Here, we describe the use of 3-hydroxy-4-pyrone-based oxidopyrylium cycloaddition chemistry in the synthesis of functionalized 3,7-dimethoxytropolones, 3,7-dihydroxytropolones, and isomeric 3-hydroxy-7-methoxytropolones through complementary benzyl alcohol-incorporating procedures. The antiviral activity of these molecules against herpes simplex virus-1 and hepatitis B virus is also described, highlighting the value of this approach and providing new structure-function insights relevant to their antiviral activity.
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Affiliation(s)
- Daniel V. Schiavone
- Department of Chemistry, Brooklyn College of the City University of New York, Brooklyn, New York 11210, USA,PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, USA
| | - Diana M. Kapkayeva
- Department of Chemistry, Brooklyn College of the City University of New York, Brooklyn, New York 11210, USA
| | - Qilan Li
- Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri 63104, USA
| | - Molly E. Woodson
- Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri 63104, USA
| | - Andreu Gazquez Casals
- Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri 63104, USA
| | - Lynda A. Morrison
- Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri 63104, USA
| | - John E. Tavis
- Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri 63104, USA
| | - Ryan P. Murelli
- Department of Chemistry, Brooklyn College of the City University of New York, Brooklyn, New York 11210, USA,PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, USA
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