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Díaz-Abellás M, Neira I, Blanco-Gómez A, Peinador C, García MD. Synergy-Promoted Specific Alkyltriphenylphosphonium Binding to CB[8]. J Org Chem 2025; 90:4149-4157. [PMID: 39924904 DOI: 10.1021/acs.joc.4c02546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2025]
Abstract
Biological substrate specificity ensures that organisms interact accurately with biomolecular receptors, crucial for key functions such as signaling and immunity. Nevertheless, this phenomenon is still poorly understood, with host-guest chemistry offering a suitable platform for studying simplified models. Herein, we report an in-depth study of the host-guest chemistry of alkyltriphenylphosphonium cations with cucurbit[8]uril (CB[8]), initiated by the serendipitous discovery of salt forming a tightly bound pseudoheteroternary 1:1 complex with CB[8]. A first generation of model substrates was designed to explore an unusual binding mode characterized by the simultaneous introduction of two distinct guest fragments within the host cavity. Structural features of the complexes were elucidated using ESI-MS and NMR 1D/2D techniques; thermodynamic properties were assessed by isothermal titration calorimetry, and kinetic parameters were derived from selective inversion-recovery NMR. Experimental results aligned well with electronic structure calculations, revealing a reproducible binding motif with submicromolar affinities. This peculiar complexation mode involves a synergistic effect caused by steric crowding around the P+ atom, facilitating the insertion of two aromatic units into CB[8] while hindering association with CB[7]. Based on these findings, a second generation of minimalistic substrates was developed, preserving the synergistic interaction mode and exhibiting specific binding to CB[8].
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Affiliation(s)
- Mauro Díaz-Abellás
- Departamento de Química and Centro Interdisciplinar de Química y Biología (CICA). Facultad de Ciencias, Universidade da Coruña, A Coruña 15071, Spain
| | - Iago Neira
- Departamento de Química and Centro Interdisciplinar de Química y Biología (CICA). Facultad de Ciencias, Universidade da Coruña, A Coruña 15071, Spain
| | - Arturo Blanco-Gómez
- Departamento de Química and Centro Interdisciplinar de Química y Biología (CICA). Facultad de Ciencias, Universidade da Coruña, A Coruña 15071, Spain
| | - Carlos Peinador
- Departamento de Química and Centro Interdisciplinar de Química y Biología (CICA). Facultad de Ciencias, Universidade da Coruña, A Coruña 15071, Spain
| | - Marcos D García
- Departamento de Química and Centro Interdisciplinar de Química y Biología (CICA). Facultad de Ciencias, Universidade da Coruña, A Coruña 15071, Spain
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2
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An S, Han J, Kim D, Lee H, Jung OS. Coordinating nature of M 6L 12 double-stranded macrocycles: co-ligand competition of perchlorate, water, and acetonitrile depending on metal(II) ions. Dalton Trans 2024; 53:9692-9699. [PMID: 38766972 DOI: 10.1039/d4dt00902a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2024]
Abstract
Self-assembly of M(ClO4)2 (M(II) = Mn(II), Co(II), Ni(II), Cu(II), and Zn(II)) with dicyclopentyldi(pyridine-3-yl)silane (L) as a donor in a mixture of acetonitrile and toluene produces crystals consisting of M6L12 double-stranded macrocycles. The geometry around the M(II) cations is a typical octahedral arrangement, but the metallamacrocycles' outer axial coordination environment is sensitive to the M(II) cations. The conformation of the unique metallamacrocycles is informatively dependent on the nature of the coordination around the M(II) cations via subtle co-ligand competition among perchlorate anions, water, and acetonitrile. Both the coordinated acetonitriles and the solvate molecules of the crystals are removed at 170 °C, thereby transforming the crystals into new crystals that return to their original form in the mixture of toluene and acetonitrile. Catalytic oxidation of 3,5-di-tert-butylcatechol using [Cu6(ClO4)8(CH3CN)4L12]4ClO4·5C7H8 is much faster than those using the transformed product, [Cu(ClO4)2L2], and a simple mixture of Cu(ClO4)2 + L.
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Affiliation(s)
- Seonghyeon An
- Department of Chemistry, Pusan National University, Busan 46241, Republic of Korea.
| | - Jihun Han
- Department of Chemistry, Pusan National University, Busan 46241, Republic of Korea.
| | - Dongwon Kim
- Department of Chemistry, Pusan National University, Busan 46241, Republic of Korea.
| | - Haeri Lee
- Department of Chemistry, Hannam University, Daejun 34054, Republic of Korea.
| | - Ok-Sang Jung
- Department of Chemistry, Pusan National University, Busan 46241, Republic of Korea.
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3
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Yang X, Varini K, Godard M, Gassiot F, Sonnette R, Ferracci G, Pecqueux B, Monnier V, Charles L, Maria S, Hardy M, Ouari O, Khrestchatisky M, Lécorché P, Jacquot G, Bardelang D. Preparation and In Vitro Validation of a Cucurbit[7]uril-Peptide Conjugate Targeting the LDL Receptor. J Med Chem 2023. [PMID: 37339060 DOI: 10.1021/acs.jmedchem.3c00423] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/22/2023]
Abstract
Here we report the coupling of a cyclic peptide (VH4127) targeting the low density lipoprotein (LDL) receptor (LDLR) noncompetitively to cucurbit[7]uril (CB[7]) to develop a new kind of drug delivery system (DDS), namely, CB[7]-VH4127, with maintained binding affinity to the LDLR. To evaluate the uptake potential of this bismacrocyclic compound, another conjugate was prepared comprising a high-affinity group for CB[7] (adamantyl(Ada)-amine) coupled to the fluorescent tracker Alexa680 (A680). The resulting A680-Ada·CB[7]-VH4127 supramolecular complex demonstrated conserved LDLR-binding potential and improved LDLR-mediated endocytosis and intracellular accumulation potential in LDLR-expressing cells. The combination of two technologies, namely, monofunctionalized CB[7] and the VH4127 LDLR-targeting peptide, opens new avenues in terms of targeting and intracellular delivery to LDLR-expressing tissues or tumors. The versatile transport capacity of CB[7], known to bind a large spectrum of bioactive or functional compounds, makes this new DDS suitable for a wide range of therapeutic or imaging applications.
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Affiliation(s)
- Xue Yang
- Aix Marseille Univ, CNRS, ICR, 13013 Marseille, France
| | | | | | | | | | - Géraldine Ferracci
- Aix Marseille Univ, CNRS, INP, Inst Neurophysiopathol, 13005 Marseille, France
| | | | - Valérie Monnier
- Aix Marseille Univ, CNRS, Centrale Marseille, FSCM, Spectropole, 13013 Marseille, France
| | | | | | - Micael Hardy
- Aix Marseille Univ, CNRS, ICR, 13013 Marseille, France
| | - Olivier Ouari
- Aix Marseille Univ, CNRS, ICR, 13013 Marseille, France
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4
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Sinclair ZL, Bell NL, Bame JR, Long DL, Cronin L. Water-soluble Self-assembled {Pd 84 } Ac Polyoxopalladate Nano-wheel as a Supramolecular Host. Angew Chem Int Ed Engl 2023; 62:e202214203. [PMID: 36336660 PMCID: PMC10100005 DOI: 10.1002/anie.202214203] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Indexed: 11/09/2022]
Abstract
Polyoxopalladates (POPs) are a class of self-assembling palladium-oxide clusters that span a variety of sizes, shapes and compositions. The largest of this family, {Pd84 }Ac , is constructed from 14 building units of {Pd6 } and lined on the inner and outer torus by 28 acetate ligands. Due to its high water solubility, large hydrophobic cavity and distinct 1 H NMR fingerprint {Pd84 }Ac is an ideal molecule for exploring supramolecular behaviour with small organic molecules in aqueous media. Molecular visualisation studies highlighted potential binding sites between {Pd84 }Ac and these species. Nuclear Magnetic Resonance (NMR) techniques, including 1 H NMR, 1 H Diffusion Ordered Spectroscopy (DOSY) and Nuclear Overhauser Spectroscopy (NOESY), were employed to study the supramolecular chemistry of this system. Here, we provide conclusive evidence that {Pd84 }Ac forms a 1 : 7 host-guest complex with benzyl viologen (BV2+ ) in aqueous solution.
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Affiliation(s)
- Zoë L Sinclair
- Digital Chemistry, Advanced Research Centre (ARC), University of Glasgow, Glasgow, G11 6EW, UK
| | - Nicola L Bell
- Digital Chemistry, Advanced Research Centre (ARC), University of Glasgow, Glasgow, G11 6EW, UK
| | - Jessica R Bame
- Digital Chemistry, Advanced Research Centre (ARC), University of Glasgow, Glasgow, G11 6EW, UK
| | - De-Liang Long
- Digital Chemistry, Advanced Research Centre (ARC), University of Glasgow, Glasgow, G11 6EW, UK
| | - Leroy Cronin
- Digital Chemistry, Advanced Research Centre (ARC), University of Glasgow, Glasgow, G11 6EW, UK
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Neira I, Peinador C, García MD. CB[7]- and CB[8]-Based [2]-(Pseudo)rotaxanes with Triphenylphosphonium-Capped Threads: Serendipitous Discovery of a New High-Affinity Binding Motif. Org Lett 2022; 24:4491-4495. [PMID: 35514222 PMCID: PMC9251766 DOI: 10.1021/acs.orglett.2c01028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
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The synthesis of
new triphenylphosphonium-capped cucurbit[7]uril
(CB[7])- and cucurbit[8]uril (CB[8])-based [2]rotaxanes was achieved
by a simultaneous threading-capping strategy. While the use of CB[7]
produced the designed [2]rotaxane, attempts to obtain the CB[8] analogue
were unsuccessful due to the unexpected strong interaction found between
the host and the phosphonium caps leading to pseudo-heteroternary
host–guest complexes. This unusual binding motif has been extensively
studied experimentally, with results in good agreement with those
obtained by dispersion-corrected DFT methods.
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Affiliation(s)
- Iago Neira
- Departamento de Química and Centro de Investigaciones Científicas Avanzadas (CICA). Facultad de Ciencias, Universidade da Coruña, 15071 A Coruña, Spain
| | - Carlos Peinador
- Departamento de Química and Centro de Investigaciones Científicas Avanzadas (CICA). Facultad de Ciencias, Universidade da Coruña, 15071 A Coruña, Spain
| | - Marcos D García
- Departamento de Química and Centro de Investigaciones Científicas Avanzadas (CICA). Facultad de Ciencias, Universidade da Coruña, 15071 A Coruña, Spain
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