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Kim SF, Amber C, Bartholomew GL, Sarpong R. Skeletal Editing Strategies Driven by Total Synthesis. Acc Chem Res 2025. [PMID: 40373286 DOI: 10.1021/acs.accounts.5c00174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2025]
Abstract
ConspectusSingle-atom skeletal editing strategies that precisely modify the core frameworks of molecules have the potential to streamline and accelerate organic synthesis by enabling conceptually simple, but otherwise synthetically challenging, retrosynthetic disconnections. In contrast to broader skeletal remodeling and rearrangement strategies, these methodologies more specifically target single-atom changes with high selectivity, even within complex molecules such as natural products or pharmaceuticals. For the past several years, our laboratory has developed several skeletal editing methodologies, including single-atom ring contractions, expansions, and transpositions of both saturated and unsaturated heterocycles, as well as other carbon scaffolds. This Account details the evolution of "skeletal editing logic" within the context of our extensive work on natural product total synthesis.Early work in the Sarpong group leveraged metal-mediated C-C bond cleavage of in situ-generated strained intermediates to accomplish total syntheses of natural products, such as the icetexane diterpenoids and cyathane diterpenes. Continuing our focus on leveraging C-C bond cleavage through "break-it-to-make-it" strategies, we then developed carvone remodeling strategies to access a variety of terpenoids (including longiborneol sesquiterpenoids, phomactins, and xishacorenes) from hydroxylated pinene derivatives. In applying this skeletal remodeling and C-C cleavage framework to alkaloid natural products, such as the preparaherquimides and lycodine-type alkaloids, we recognized that single-atom changes to the saturated nitrogen-containing rings within these natural products would enable the direct conversion between distinct but structurally related natural product families. Thus, we began developing methods that selectively modify the core frameworks of N-heterocycles; this focus led to our work on the deconstructive fluorination and diversification of piperidines and ultimately to our recent body of work on direct, single-atom core framework modifications (single-atom skeletal editing). In the context of saturated heterocycles, we developed photomediated enantioselective ring contractions of α-acylated motifs and reductive ring contractions of cyclic hydroxylamines. For unsaturated heterocycles, we have developed ring contractions of azines (e.g., pyrimidine to pyrazole), 15N isotopic labeling of azines, and phototranspositions of indazoles to benzimidazoles. To direct our focus on reaction development, a cheminformatic analysis of heteroaromatic skeletal edits served to quantitatively inform which transformations would most significantly expand the accessible chemical space. Apart from heterocycles, we also reported single-nitrogen insertion through the reductive amination of carbonyl C-C bonds. Ultimately, the goal of this research is to develop mild and selective skeletal editing methodologies that can be applied to total synthesis and organic synthesis more generally. While recent total syntheses from our group have targeted simplified retrosyntheses through single-atom skeletal editing logic (e.g., daphenylline and harringtonolide), multiple steps were still required to achieve the formal desired "edit". As such, the continued development of truly single-step, mild, and selective reactions that can edit the cores of highly complex molecules remains highly desirable.
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Affiliation(s)
- Sojung F Kim
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
| | - Charis Amber
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
| | - G Logan Bartholomew
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
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Göttemann LT, Amber C, Mahmood K, Mader P, Kokculer I, Andris T, Zavesky BP, Sarpong R. C-C Cleavage/Cross-Coupling Approach for the Modular Synthesis of Medium-to-Large Sized Rings: Total Synthesis of Resorcylic Acid Lactone Natural Products. J Am Chem Soc 2025; 147:9900-9908. [PMID: 40042818 DOI: 10.1021/jacs.5c00801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2025]
Abstract
The chemical synthesis of medium (8-11 membered) and large sized (≥12 membered) cyclic systems is often challenging. The introduction of transannular strain and loss of degrees of freedom in forming macrocycles often result in poor reaction kinetics and thermodynamics (i.e., thermodynamically disfavored at equilibrium). To address these challenges, we herein report a strategy for the synthesis of medium-to-large sized rings, which leverages strain-release and metal templating through a palladium-mediated C-C cleavage/cross-coupling. By means of DOSY NMR techniques, we identified an undesired competing β-hydrogen elimination pathway, which was substrate dependent. Using a streamlined synthesis of the requisite precursors, our method enables the rapid generation of complex medium-to-large sized rings in a modular fashion through a C(sp2)-C(sp3) macrocyclization. The transformation enabled the short total synthesis of various resorcylic acid lactone (RAL) natural products and unnatural analogues of late-stage intermediates. A mechanistic proposal for the macrocyclization is supported by computational studies of the reaction using density functional theory.
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Affiliation(s)
- Lucas T Göttemann
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Charis Amber
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Khalid Mahmood
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Philipp Mader
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Ismail Kokculer
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Théo Andris
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Blane P Zavesky
- Corteva Agriscience, Indianapolis, Indiana 46268, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California, Berkeley, California 94720, United States
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Singh M, Gaskins B, Johnson DR, Elles CG, Boskovic Z. Synthesis of Cycloheptatriene-Containing Azetidine Lactones. J Org Chem 2022; 87:15001-15010. [PMID: 35605105 PMCID: PMC10091648 DOI: 10.1021/acs.joc.2c00367] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
We prepared a collection of complex cycloheptatriene-containing azetidine lactones by applying two key photochemical reactions: "aza-Yang" cyclization and Buchner carbene insertion into aromatic rings. While photolysis of phenacyl amines leads to a rapid charge transfer and elimination, we found that a simple protonation of the amine enables the formation of azetidinols as single diastereomers. We provide evidence, through ultrafast spectroscopy, for the electron transfer from free amines in the excited state. Further, we characterize the aza-Yang reaction by establishing the dependence of the initial reaction rates on the rates of photon absorption. An unanticipated change in reactivity in morpholine analogues is explained through interactions with the tosylate anion. The Buchner reaction proceeds with a slight preference for one diastereomer over the other, and successful reaction requires electron-donating carbene-stabilizing substituents. Overall, 16 compounds were prepared over seven steps. Guided by an increase in structural complexity, efforts such as this one extend the reach of chemists into unexplored chemical space and provide useful quantities of new compounds for studies focused on their properties.
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Affiliation(s)
- Manvendra Singh
- Department of Medicinal Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - Bryce Gaskins
- Department of Medicinal Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - Daniel R Johnson
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - Christopher G Elles
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
| | - Zarko Boskovic
- Department of Medicinal Chemistry, University of Kansas, Lawrence, Kansas 66045, United States
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Alvarez-Dorta D, León EI, Martín Á, Kennedy AR, Pérez-Martín I, Shankland K, Suárez E. Regio- and Stereoselectivity of the Norrish-Yang Photocyclization of Dialkyl 1,2-Diketones: Solution versus Solid State Photochemistry of Two Polymorphs. J Org Chem 2022; 87:14940-14947. [PMID: 36283069 PMCID: PMC9639068 DOI: 10.1021/acs.joc.2c01855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
As shown by X-ray crystallography, crystals of 3β-acetoxy-16,17-seco-17,20-dioxopregn-5-ene-16-nitrile are dimorphic. The regioselectivity of the Norrish-Yang type II photocyclization under visible light of this steroidal 1,2-diketone, which bears primary, secondary, and tertiary nonequivalent abstractable γ-hydrogens, dramatically increases in the crystalline state of both polymorphs. X-ray crystallography and molecular mechanics calculations reveal crystal structure-solid state photochemistry relationships.
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Affiliation(s)
- Dimitri Alvarez-Dorta
- Síntesis
de Productos Naturales, Instituto de Productos
Naturales y Agrobiología del CSIC, Avda. Astrofísico Francisco Sánchez
3, 38206 La Laguna, Tenerife, Spain
| | - Elisa I. León
- Síntesis
de Productos Naturales, Instituto de Productos
Naturales y Agrobiología del CSIC, Avda. Astrofísico Francisco Sánchez
3, 38206 La Laguna, Tenerife, Spain,
| | - Ángeles Martín
- Síntesis
de Productos Naturales, Instituto de Productos
Naturales y Agrobiología del CSIC, Avda. Astrofísico Francisco Sánchez
3, 38206 La Laguna, Tenerife, Spain
| | - Alan R. Kennedy
- WestCHEM
Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland, United Kingdom
| | - Inés Pérez-Martín
- Síntesis
de Productos Naturales, Instituto de Productos
Naturales y Agrobiología del CSIC, Avda. Astrofísico Francisco Sánchez
3, 38206 La Laguna, Tenerife, Spain
| | - Kenneth Shankland
- School
of Pharmacy, University of Reading, Reading RG6 6AD, United Kingdom
| | - Ernesto Suárez
- Síntesis
de Productos Naturales, Instituto de Productos
Naturales y Agrobiología del CSIC, Avda. Astrofísico Francisco Sánchez
3, 38206 La Laguna, Tenerife, Spain,
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Gorobets E, Papatzimas JW, Dourado J, Yousefalizadeh G, Lee J, Brownsey DK, Stamplecoskie K, Davis R, Derksen DJ. A Vinylogous Norrish Reaction as a Strategy for Light-Mediated Ring Expansion. Chem Commun (Camb) 2022; 58:2910-2913. [DOI: 10.1039/d2cc00513a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The reactions of bicyclic divinyl ketones display wavelength-dependent changes in product formation. UV irradiation results in the formation of competitive [6,3,5] and [7,3,5] tricyclic unsaturated ketones that subsequently undergo ring...
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