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Chang W, Wang E, Liang J, Shao X, Xu X, Yang WL, Li Z. Organocatalytic enantioselective α-difluoromethylketone thiolation of β-keto esters using phthalimide-SCF 2COAr. Org Biomol Chem 2025. [PMID: 40401336 DOI: 10.1039/d5ob00520e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/23/2025]
Abstract
The first asymmetric α-difluoromethylketone thiolation of diverse β-keto esters using an electrophilic phthalimide-SCF2COAr reagent (PhthN-SCF2COAr) was reported. In the presence of cinchona-alkaloid-based catalyst (DHQD)2PHAL, the reaction was achieved in moderate yields with a moderate to excellent enantioselectivity (up to 93% ee) under mild reaction conditions and exhibited functional group compatibility. An ammonium hydrogen-bonded induction model was proposed to rationalize the origin of enantioselectivity.
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Affiliation(s)
- Wenning Chang
- Shanghai Key Laboratory of Chemical Biology & School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R. China.
| | - En Wang
- Shanghai Key Laboratory of Chemical Biology & School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R. China.
| | - Junqing Liang
- Shanghai Key Laboratory of Chemical Biology & School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R. China.
| | - Xusheng Shao
- Shanghai Key Laboratory of Chemical Biology & School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R. China.
| | - Xiaoyong Xu
- Shanghai Key Laboratory of Chemical Biology & School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R. China.
| | - Wu-Lin Yang
- Shanghai Key Laboratory of Chemical Biology & School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R. China.
| | - Zhong Li
- Shanghai Key Laboratory of Chemical Biology & School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R. China.
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2
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Liu S, Zhou J, Yu L, Liu Y, Huang Y, Ouyang Y, Liu GK, Xu XH, Shibata N. Nitrogen-Based Organofluorine Functional Molecules: Synthesis and Applications. Chem Rev 2025; 125:4603-4764. [PMID: 40261821 DOI: 10.1021/acs.chemrev.4c00661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/24/2025]
Abstract
Fluorine and nitrogen form a successful partnership in organic synthesis, medicinal chemistry, and material sciences. Although fluorine-nitrogen chemistry has a long and rich history, this field has received increasing interest and made remarkable progress over the past two decades, driven by recent advancements in transition metal and organocatalysis and photochemistry. This review, emphasizing contributions from 2015 to 2023, aims to update the state of the art of the synthesis and applications of nitrogen-based organofluorine functional molecules in organic synthesis and medicinal chemistry. In dedicated sections, we first focus on fluorine-containing reagents organized according to the type of fluorine-containing groups attached to nitrogen, including N-F, N-RF, N-SRF, and N-ORF. This review also covers nitrogen-linked fluorine-containing building blocks, catalysts, pharmaceuticals, and agrochemicals, underlining these components' broad applicability and growing importance in modern chemistry.
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Affiliation(s)
- Shuai Liu
- College of Chemistry and Chemical Engineering, Donghua University, 2999 North Renmin Road, Shanghai 201620, China
- National Engineering Research Center for Carbohydrate Synthesis, Jiangxi Normal University, Nanchang 330022, China
| | - Jun Zhou
- Department of Nanopharmaceutical Sciences & Department of Life Science and Applied Chemistry, Nagoya Institute of Technology, Gokiso, Showa-ku, Nagoya 466-8555, Japan
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, China
| | - Lu Yu
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, Chinese Academy of Science, 345 Lingling Lu, Shanghai 200032, China
| | - Yingle Liu
- School of Chemistry and Environmental Engineering, Sichuan University of Science&Engineering, 180 Xueyuan Street, Huixing Lu, Zigong, Sichuan 643000, China
| | - Yangen Huang
- College of Chemistry and Chemical Engineering, Donghua University, 2999 North Renmin Road, Shanghai 201620, China
| | - Yao Ouyang
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, Chinese Academy of Science, 345 Lingling Lu, Shanghai 200032, China
| | - Guo-Kai Liu
- School of Pharmacy, Shenzhen University Medical School, Shenzhen University, Shenzhen 518055, China
| | - Xiu-Hua Xu
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, Chinese Academy of Science, 345 Lingling Lu, Shanghai 200032, China
| | - Norio Shibata
- Department of Nanopharmaceutical Sciences & Department of Life Science and Applied Chemistry, Nagoya Institute of Technology, Gokiso, Showa-ku, Nagoya 466-8555, Japan
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3
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Casasús P, Mestre J, Radłowska R, Bernús M, Boutureira O. Electrophilic glycoluril-based reagents for atom-economic thiocyanation and selenocyanation of (hetero)arenes. Org Biomol Chem 2025; 23:4463-4470. [PMID: 40223445 DOI: 10.1039/d5ob00536a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/15/2025]
Abstract
Two electrophilic glycoluril-based N-XCN reagents (X = S, Se) were developed for introducing SCN/SeCN groups into aromatic substrates, including the late-stage modification of bioactive molecules. Their application produces minimal waste, enables simple purification, and offers potential for reagent regeneration. Additionally, their compatibility with green solvents and flow technology was demonstrated. The sustainability of the process was evaluated using green metrics and Ecoscale values, emphasizing the complementary roles of the reagents and solvent recovery in enhancing atom economy and reducing waste.
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Affiliation(s)
- Paula Casasús
- Departament de Química Analítica i Química Orgànica, Universitat Rovira I Virgili, C/Marcel·lí Domingo 1, 43007 Tarragona, Spain.
| | - Jordi Mestre
- Departament de Química Analítica i Química Orgànica, Universitat Rovira I Virgili, C/Marcel·lí Domingo 1, 43007 Tarragona, Spain.
| | - Roksana Radłowska
- Departament de Química Analítica i Química Orgànica, Universitat Rovira I Virgili, C/Marcel·lí Domingo 1, 43007 Tarragona, Spain.
| | - Miguel Bernús
- Departament de Química Analítica i Química Orgànica, Universitat Rovira I Virgili, C/Marcel·lí Domingo 1, 43007 Tarragona, Spain.
| | - Omar Boutureira
- Departament de Química Analítica i Química Orgànica, Universitat Rovira I Virgili, C/Marcel·lí Domingo 1, 43007 Tarragona, Spain.
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4
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Bernús M, Núñez GD, Hartley WC, Guasch M, Mestre J, Besora M, Carbó JJ, Boutureira O. Impact of Fluorine Pattern on Lipophilicity and Acid-Base Properties of 2-(Thiofluoroalkyl)pyridines: Insights from Experiments and Statistical Modeling. J Med Chem 2025; 68:4787-4800. [PMID: 39960109 PMCID: PMC12124721 DOI: 10.1021/acs.jmedchem.4c03045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2024] [Revised: 01/28/2025] [Accepted: 01/31/2025] [Indexed: 02/28/2025]
Abstract
Lipophilicity and acid-base properties are two key aspects of the optimization of a compound in drug discovery. Using 19F NMR, we experimentally determined the log D7.4 of a wide array of 2-thiofluoroalkyl (SRF) and 2-sulfonyl fluoroalkyl (SO2RF) substituted pyridines and the pKa values of their protonated counterparts. Statistical modeling based on constitutional and DFT descriptors provided further insights into the structure-property relationship, explaining the experimental observations and predicting log D7.4 values. Our results highlight the influence of fluorination topology in SRF fragments and demonstrate the dual effect of fluorine on molecular polarity, increasing the hydrophobic surface and the polarity of the sulfur moiety. By analyzing methyl- and ethyl-derived fragments, we found a gradient in log D7.4 values influenced by the oxidation state of the sulfur atom and fluorination pattern. Our findings emphasize the context-dependent impact of fluorination and offer insights to better understand the impact of thiofluoroalkyl chains on these physicochemical properties.
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Affiliation(s)
- Miguel Bernús
- Departament
de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, 43007Tarragona, Spain
| | - Gonzalo D. Núñez
- Departament
de Química Física i Inorgànica, Universitat Rovira i Virgili, 43007Tarragona, Spain
| | - Will C. Hartley
- Departament
de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, 43007Tarragona, Spain
| | - Marc Guasch
- Departament
de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, 43007Tarragona, Spain
| | - Jordi Mestre
- Departament
de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, 43007Tarragona, Spain
| | - Maria Besora
- Departament
de Química Física i Inorgànica, Universitat Rovira i Virgili, 43007Tarragona, Spain
| | - Jorge J. Carbó
- Departament
de Química Física i Inorgànica, Universitat Rovira i Virgili, 43007Tarragona, Spain
| | - Omar Boutureira
- Departament
de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, 43007Tarragona, Spain
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5
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Spennacchio M, Bernús M, Stanić J, Mazzarella D, Colella M, Douglas JJ, Boutureira O, Noël T. A unified flow strategy for the preparation and use of trifluoromethyl-heteroatom anions. Science 2024; 385:991-996. [PMID: 39208115 DOI: 10.1126/science.adq2954] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 07/16/2024] [Indexed: 09/04/2024]
Abstract
The trifluoromethyl group (CF3) is a key functionality in pharmaceutical and agrochemical development, greatly enhancing the efficacy and properties of resulting compounds. However, attaching the CF3 group to heteroatoms such as sulfur, oxygen, and nitrogen poses challenges because of the lack of general synthetic methods and reliance on bespoke reagents. Here, we present a modular flow platform that streamlines the synthesis of heteroatom-CF3 motifs. Our method uses readily available organic precursors in combination with cesium fluoride as the primary fluorine source, facilitating the rapid generation of N-trifluoromethyl(R) [NCF3(R)], SCF3 (trifluoromethylthio), and OCF3 (trifluoromethoxy) anions on demand without reliance on perfluoroalkyl precursor reagents. This strategy offers a more environmentally friendly synthesis of trifluoromethyl(heteroatom)-containing molecules, with the potential for scalability in manufacturing processes facilitated by flow technology.
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Affiliation(s)
- Mauro Spennacchio
- Flow Chemistry Group, Van't Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Amsterdam, Netherlands
- FLAME-Lab, Flow Chemistry and Microreactor Technology Laboratory, Department of Pharmacy-Drug Sciences, University of Bari "A. Moro," 70125 Bari, Italy
| | - Miguel Bernús
- Flow Chemistry Group, Van't Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Amsterdam, Netherlands
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, 43007 Tarragona, Spain
| | - Jelena Stanić
- Flow Chemistry Group, Van't Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Amsterdam, Netherlands
| | - Daniele Mazzarella
- Flow Chemistry Group, Van't Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Amsterdam, Netherlands
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy
| | - Marco Colella
- Flow Chemistry Group, Van't Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Amsterdam, Netherlands
- FLAME-Lab, Flow Chemistry and Microreactor Technology Laboratory, Department of Pharmacy-Drug Sciences, University of Bari "A. Moro," 70125 Bari, Italy
| | - James J Douglas
- Early Chemical Development, Pharmaceutical Sciences R&D, AstraZeneca, Macclesfield, UK
| | - Omar Boutureira
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, 43007 Tarragona, Spain
| | - Timothy Noël
- Flow Chemistry Group, Van't Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Amsterdam, Netherlands
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Ye S, Wang H, Liang G, Hu Z, Wan K, Zhang L, Peng B. ortho-Cyanomethylation of aryl fluoroalkyl sulfoxides via a sulfonium-Claisen rearrangement. Org Biomol Chem 2024; 22:1495-1499. [PMID: 38293848 DOI: 10.1039/d3ob02102e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
We hereby report the ortho-cyanomethylation of aryl fluoroalkyl sulfoxides with acetonitrile through a sulfonium-Claisen-type rearrangement. This reaction enables the incorporation of two valuable functional groups, such as the cyanomethyl group and the fluoroalkylthio group, into arenes. Remarkably, fluoroalkylthio groups, such as SCFH2 and SCF2H, bearing active hydrogen, are well tolerated by the reaction. The success of the reaction relies on the use of an excess amount of acetonitrile and the electronegative effect of fluoroalkyl substituents, both of which promote the electrophilic assembly of sulfoxides with acetonitrile. Consequently, the sulfonium-Claisen rearrangement reaction tolerates a wide variety of fluoroalkyl sulfoxides bearing functional groups including halides, nitriles, ketones, sulfones, and amides, which are appealing for subsequent elaboration and exploration.
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Affiliation(s)
- Sheng Ye
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Zhejiang Normal University, Jinhua 321004, China.
| | - Huanhuan Wang
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Zhejiang Normal University, Jinhua 321004, China.
| | - Guoqing Liang
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Zhejiang Normal University, Jinhua 321004, China.
| | - Zhengkai Hu
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Zhejiang Normal University, Jinhua 321004, China.
| | - Kun Wan
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Zhejiang Normal University, Jinhua 321004, China.
| | - Lei Zhang
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Zhejiang Normal University, Jinhua 321004, China.
| | - Bo Peng
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Zhejiang Normal University, Jinhua 321004, China.
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