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Pinheiro Dos Santos TJ, Orcan-Ekmekci B, Chapman WG, Singer PM, Asthagiri DN. Theory and modeling of molecular modes in the NMR relaxation of fluids. J Chem Phys 2024; 160:064108. [PMID: 38341792 DOI: 10.1063/5.0180040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 01/18/2024] [Indexed: 02/13/2024] Open
Abstract
Traditional theories of the nuclear magnetic resonance (NMR) autocorrelation function for intra-molecular dipole pairs assume a single-exponential decay, yet the calculated autocorrelation of realistic systems displays a rich, multi-exponential behavior, resulting in anomalous NMR relaxation dispersion (i.e., frequency dependence). We develop an approach to model and interpret the multi-exponential intra-molecular autocorrelation using simple, physical models within a rigorous statistical mechanical development that encompasses both rotational diffusion and translational diffusion in the same framework. We recast the problem of evaluating the autocorrelation in terms of averaging over a diffusion propagator whose evolution is described by a Fokker-Planck equation. The time-independent part admits an eigenfunction expansion, allowing us to write the propagator as a sum over modes. Each mode has a spatial part that depends on the specified eigenfunction and a temporal part that depends on the corresponding eigenvalue (i.e., correlation time) with a simple, exponential decay. The spatial part is a probability distribution of the dipole pair, analogous to the stationary states of a quantum harmonic oscillator. Drawing inspiration from the idea of inherent structures in liquids, we interpret each of the spatial contributions as a specific molecular mode. These modes can be used to model and predict the NMR dipole-dipole relaxation dispersion of fluids by incorporating phenomena on the molecular level. We validate our statistical mechanical description of the distribution in molecular modes with molecular dynamics simulations interpreted without any relaxation models or adjustable parameters: the most important poles in the Padé-Laplace transform of the simulated autocorrelation agree with the eigenvalues predicted by the theory.
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Affiliation(s)
| | | | - Walter G Chapman
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, USA
| | - Philip M Singer
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, USA
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Philips A, Autschbach J. Unified Description of Proton NMR Relaxation in Water, Acetonitrile, and Methane from Molecular Dynamics Simulations in the Liquid, Supercritical, and Gas Phases. J Phys Chem B 2023; 127:1167-1177. [PMID: 36700851 DOI: 10.1021/acs.jpcb.2c06411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
A comprehensive calculation of proton NMR relaxation in water, acetonitrile, and methane across a wide range of the phase diagram is provided via ab initio and force-field-based molecular dynamics simulations. The formalism used for the spin-rotation (SR) contribution to relaxation is developed for use with any molecular symmetry and utilizes the full molecular SR tensors, which are calculated from first-principles via Kohn-Sham (KS) DFT. In combination with calculations of the dipolar contribution, near-quantitative agreement with total measured relaxation rates is achieved.
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Affiliation(s)
- Adam Philips
- Department of Chemistry, University at Buffalo State University of New York, Buffalo, New York14260-3000, United States
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo State University of New York, Buffalo, New York14260-3000, United States
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Valiya Parambathu A, Chapman WG, Hirasaki GJ, Asthagiri D, Singer PM. Effect of Nanoconfinement on NMR Relaxation of Heptane in Kerogen from Molecular Simulations and Measurements. J Phys Chem Lett 2023; 14:1059-1065. [PMID: 36693239 DOI: 10.1021/acs.jpclett.2c03699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Kerogen-rich shale reservoirs will play a key role during the energy transition, yet the effects of nanoconfinement on the NMR relaxation of hydrocarbons in kerogen are poorly understood. We use atomistic MD simulations to investigate the effects of nanoconfinement on the 1H NMR relaxation times T1 and T2 of heptane in kerogen. In the case of T1, we discover the important role of confinement in reducing T1 by ∼3 orders of magnitude from that of bulk heptane, in agreement with measurements of heptane dissolved in kerogen from the Kimmeridge Shale, without any models or free parameters. In the case of T2, we discover that confinement breaks spatial isotropy and gives rise to residual dipolar coupling which reduces T2 by ∼5 orders of magnitude from the value for bulk heptane. We use the simulated T2 to calibrate the surface relaxivity and thence predict the pore-size distribution of the organic nanopores in kerogen, without additional experimental data.
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Affiliation(s)
- Arjun Valiya Parambathu
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main Street, Houston, Texas77005, United States
- Department of Chemical and Biomolecular Engineering, University of Delaware, 150 Academy Street, Newark, Delaware19716, United States
| | - Walter G Chapman
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main Street, Houston, Texas77005, United States
| | - George J Hirasaki
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main Street, Houston, Texas77005, United States
| | - Dilipkumar Asthagiri
- Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee37830-6012, United States
| | - Philip M Singer
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main Street, Houston, Texas77005, United States
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Momot KI. Hydrated Collagen: Where Physical Chemistry, Medical Imaging, and Bioengineering Meet. J Phys Chem B 2022; 126:10305-10316. [PMID: 36473185 DOI: 10.1021/acs.jpcb.2c06217] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
It is well-known that collagen is the most abundant protein in the human body; however, what is not often appreciated is its fascinating physical chemistry and molecular physics. In this Perspective, we aim to expose some of the physicochemical phenomena associated with the hydration of collagen and to examine the role collagen's hydration water plays in determining its biological function as well as applications ranging from radiology to bioengineering. The main focus is on the Magic-Angle Effect, a phenomenon observed in Nuclear Magnetic Resonance (NMR) spectroscopy and Magnetic Resonance Imaging (MRI) of anisotropic collagenous tissues such as articular cartilage and tendon. While the effect has been known in NMR and MRI for decades, its exact molecular mechanism remains a topic of debate and continuing research in scientific literature. We survey some of the latest research aiming to develop a comprehensive molecular-level model of the Magic-Angle Effect. We also touch on other fields where understanding of collagen hydration is important, particularly nanomechanics and mechanobiology, biomaterials, and piezoelectric sensors.
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Affiliation(s)
- Konstantin I Momot
- School of Chemistry and Physics, Queensland University of Technology (QUT), Brisbane, QLD 4001, Australia
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Singer PM, Parambathu AV, Pinheiro Dos Santos TJ, Liu Y, Alemany LB, Hirasaki GJ, Chapman WG, Asthagiri D. Predicting 1H NMR relaxation in Gd 3+-aqua using molecular dynamics simulations. Phys Chem Chem Phys 2021; 23:20974-20984. [PMID: 34518855 DOI: 10.1039/d1cp03356e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Atomistic molecular dynamics simulations are used to predict 1H NMR T1 relaxation of water from paramagnetic Gd3+ ions in solution at 25 °C. Simulations of the T1 relaxivity dispersion function r1 computed from the Gd3+-1H dipole-dipole autocorrelation function agree within ≃8% of measurements in the range f0 ≃ 5 ↔ 500 MHz, without any adjustable parameters in the interpretation of the simulations, and without any relaxation models. The simulation results are discussed in the context of the Solomon-Bloembergen-Morgan inner-sphere relaxation model, and the Hwang-Freed outer-sphere relaxation model. Below f0 ≲ 5 MHz, the simulation overestimates r1 compared to measurements, which is used to estimate the zero-field electron-spin relaxation time. The simulations show potential for predicting r1 at high frequencies in chelated Gd3+ contrast-agents used for clinical MRI.
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Affiliation(s)
- Philip M Singer
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main St., Houston, TX 77005, USA.
| | - Arjun Valiya Parambathu
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main St., Houston, TX 77005, USA.
| | | | - Yunke Liu
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main St., Houston, TX 77005, USA.
| | - Lawrence B Alemany
- Shared Equipment Authority and Department of Chemistry, Rice University, 6100 Main St., Houston, TX 77005, USA
| | - George J Hirasaki
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main St., Houston, TX 77005, USA.
| | - Walter G Chapman
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main St., Houston, TX 77005, USA.
| | - Dilip Asthagiri
- Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main St., Houston, TX 77005, USA.
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