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For: Chen C, Yu B, Yousefi R, Iwahara J, Pettitt BM. Assessment of the Components of the Electrostatic Potential of Proteins in Solution: Comparing Experiment and Theory. J Phys Chem B 2022;126:4543-4554. [PMID: 35696448 PMCID: PMC9832648 DOI: 10.1021/acs.jpcb.2c01611] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Number Cited by Other Article(s)
1
Ding J, Ju Z, Fu T, Ding L, Yan X, Zhou B, Yu M, Ge C. Structural stability of Calmodulin-target peptide complex at different temperatures based on molecular dynamics simulation. BMC Chem 2025;19:143. [PMID: 40413538 DOI: 10.1186/s13065-025-01515-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2024] [Accepted: 05/14/2025] [Indexed: 05/27/2025]  Open
2
Chen C, Yu B, Wang X, Iwahara J, Pettitt BM. Effects of Probe-Related Correlations on Local Electrostatic Potentials Around DNA. J Comput Chem 2025;46:e70125. [PMID: 40365786 DOI: 10.1002/jcc.70125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2025] [Revised: 04/11/2025] [Accepted: 04/24/2025] [Indexed: 05/15/2025]
3
Tsanai M, Head-Gordon T. Determining the Role of Electrostatics in the Making and Breaking of the Caprin1-ATP Nanocondensate. J Phys Chem B 2025;129:4705-4714. [PMID: 40314620 DOI: 10.1021/acs.jpcb.5c01925] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2025]
4
Bolik-Coulon N, Rößler P, Kay LE. NMR-Based Measurements of Site-Specific Electrostatic Potentials of Histone Tails in Nucleosome Core Particles. J Am Chem Soc 2025;147:14519-14529. [PMID: 40237318 DOI: 10.1021/jacs.5c01567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/18/2025]
5
Yu B, Bolik-Coulon N, Rangadurai AK, Kay LE, Iwahara J. Gadolinium-Based NMR Spin Relaxation Measurements of Near-Surface Electrostatic Potentials of Biomolecules. J Am Chem Soc 2024;146:20788-20801. [PMID: 39028837 PMCID: PMC11295196 DOI: 10.1021/jacs.4c04433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Revised: 06/09/2024] [Accepted: 06/28/2024] [Indexed: 07/21/2024]
6
Iwahara J, Pettitt BM, Yu B. Direct measurements of biomolecular electrostatics through experiments. Curr Opin Struct Biol 2023;82:102680. [PMID: 37573815 PMCID: PMC10947535 DOI: 10.1016/j.sbi.2023.102680] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 07/19/2023] [Accepted: 07/19/2023] [Indexed: 08/15/2023]
7
Okuno Y, Clore GM. Extending the Experimentally Accessible Range of Spin Dipole-Dipole Spectral Densities for Protein-Cosolute Interactions by Temperature-Dependent Solvent Paramagnetic Relaxation Enhancement Measurements. J Phys Chem B 2023;127:7887-7898. [PMID: 37681752 PMCID: PMC11345855 DOI: 10.1021/acs.jpcb.3c05301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/09/2023]
8
Kaushik Rangadurai A, Toyama Y, Kay LE. Practical considerations for the measurement of near-surface electrostatics based on solvent paramagnetic relaxation enhancements. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2023;349:107400. [PMID: 36796143 DOI: 10.1016/j.jmr.2023.107400] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 02/02/2023] [Accepted: 02/03/2023] [Indexed: 06/18/2023]
9
Toyama Y, Rangadurai AK, Forman-Kay JD, Kay LE. Surface electrostatics dictate RNA-binding protein CAPRIN1 condensate concentration and hydrodynamic properties. J Biol Chem 2023;299:102776. [PMID: 36496075 PMCID: PMC9823214 DOI: 10.1016/j.jbc.2022.102776] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 12/01/2022] [Accepted: 12/05/2022] [Indexed: 12/12/2022]  Open
10
Siryk S, Rocchia W. Arbitrary-Shape Dielectric Particles Interacting in the Linearized Poisson-Boltzmann Framework: An Analytical Treatment. J Phys Chem B 2022;126:10400-10426. [PMID: 36473089 PMCID: PMC9761689 DOI: 10.1021/acs.jpcb.2c05564] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
11
Yu B, Wang X, Iwahara J. Measuring Local Electrostatic Potentials Around Nucleic Acids by Paramagnetic NMR Spectroscopy. J Phys Chem Lett 2022;13:10025-10029. [PMID: 36264151 PMCID: PMC9700389 DOI: 10.1021/acs.jpclett.2c02623] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
12
Yu B, Bien KG, Wang T, Iwahara J. Diffusion NMR-based comparison of electrostatic influences of DNA on various monovalent cations. Biophys J 2022;121:3562-3570. [PMID: 35754184 PMCID: PMC9515368 DOI: 10.1016/j.bpj.2022.06.022] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Revised: 06/03/2022] [Accepted: 06/22/2022] [Indexed: 11/18/2022]  Open
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