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For: Shenai PM, Fernandez-Alberti S, Bricker WP, Tretiak S, Zhao Y. Internal Conversion and Vibrational Energy Redistribution in Chlorophyll A. J Phys Chem B 2015;120:49-58. [DOI: 10.1021/acs.jpcb.5b09548] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Bäuml L, de Vivie-Riedle R. Coupled Nuclear and Electron Dynamics in Chlorophyll Unraveled by XMS-CASPT2 X-ray Absorption Spectra. J Phys Chem B 2025;129:2159-2167. [PMID: 39960808 DOI: 10.1021/acs.jpcb.4c07787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2025]
2
Gao RY, Zou JW, Shi YP, Li DH, Zheng J, Zhang JP. The Q-Band Energetics and Relaxation of Chlorophylls a and b as Revealed by Visible-to-Near Infrared Time-Resolved Absorption Spectroscopy. J Phys Chem Lett 2025;16:789-794. [PMID: 39805070 DOI: 10.1021/acs.jpclett.4c03171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
3
Keil E, Kumar A, Bäuml L, Reiter S, Thyrhaug E, Moser S, Duffy CDP, de Vivie-Riedle R, Hauer J. Reassessing the role and lifetime of Q x in the energy transfer dynamics of chlorophyll a. Chem Sci 2025;16:1684-1695. [PMID: 39629486 PMCID: PMC11610765 DOI: 10.1039/d4sc06441k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2024] [Accepted: 11/25/2024] [Indexed: 12/07/2024]  Open
4
Rukin PS, Fortino M, Prezzi D, Rozzi CA. Complementing Adiabatic and Nonadiabatic Methods To Understand Internal Conversion Dynamics in Porphyrin Derivatives. J Chem Theory Comput 2024;20:10759-10769. [PMID: 39662887 DOI: 10.1021/acs.jctc.4c00698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2024]
5
Zhu Y, Peng J, Xu C, Lan Z. Unsupervised Machine Learning in the Analysis of Nonadiabatic Molecular Dynamics Simulation. J Phys Chem Lett 2024;15:9601-9619. [PMID: 39270134 DOI: 10.1021/acs.jpclett.4c01751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/15/2024]
6
Shu Y, Truhlar DG. Generalized Semiclassical Ehrenfest Method: A Route to Wave Function-Free Photochemistry and Nonadiabatic Dynamics with Only Potential Energies and Gradients. J Chem Theory Comput 2024;20:4396-4426. [PMID: 38819014 DOI: 10.1021/acs.jctc.4c00424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
7
Liu H, Ruan M, Mao P, Wang Z, Chen H, Weng Y. Unraveling the excited-state vibrational cooling dynamics of chlorophyll-a using femtosecond broadband fluorescence spectroscopy. J Chem Phys 2024;160:205101. [PMID: 38804490 DOI: 10.1063/5.0203819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 05/13/2024] [Indexed: 05/29/2024]  Open
8
Toldo JM, Mattos RS, Pinheiro M, Mukherjee S, Barbatti M. Recommendations for Velocity Adjustment in Surface Hopping. J Chem Theory Comput 2024;20:614-624. [PMID: 38207213 DOI: 10.1021/acs.jctc.3c01159] [Citation(s) in RCA: 19] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2024]
9
Freixas VM, Malone W, Li X, Song H, Negrin-Yuvero H, Pérez-Castillo R, White A, Gibson TR, Makhov DV, Shalashilin DV, Zhang Y, Fedik N, Kulichenko M, Messerly R, Mohanam LN, Sharifzadeh S, Bastida A, Mukamel S, Fernandez-Alberti S, Tretiak S. NEXMD v2.0 Software Package for Nonadiabatic Excited State Molecular Dynamics Simulations. J Chem Theory Comput 2023;19:5356-5368. [PMID: 37506288 DOI: 10.1021/acs.jctc.3c00583] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2023]
10
Shu Y, Zhang L, Wu D, Chen X, Sun S, Truhlar DG. New Gradient Correction Scheme for Electronically Nonadiabatic Dynamics Involving Multiple Spin States. J Chem Theory Comput 2023;19:2419-2429. [PMID: 37079755 DOI: 10.1021/acs.jctc.2c01173] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/22/2023]
11
Toldo JM, do Casal MT, Ventura E, do Monte SA, Barbatti M. Surface hopping modeling of charge and energy transfer in active environments. Phys Chem Chem Phys 2023;25:8293-8316. [PMID: 36916738 PMCID: PMC10034598 DOI: 10.1039/d3cp00247k] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 03/01/2023] [Indexed: 03/05/2023]
12
Zhao X, Shu Y, Zhang L, Xu X, Truhlar DG. Direct Nonadiabatic Dynamics of Ammonia with Curvature-Driven Coherent Switching with Decay of Mixing and with Fewest Switches with Time Uncertainty: An Illustration of Population Leaking in Trajectory Surface Hopping Due to Frustrated Hops. J Chem Theory Comput 2023;19:1672-1685. [PMID: 36877830 DOI: 10.1021/acs.jctc.2c01260] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
13
Peng WT, Brey D, Giannini S, Dell’Angelo D, Burghardt I, Blumberger J. Exciton Dissociation in a Model Organic Interface: Excitonic State-Based Surface Hopping versus Multiconfigurational Time-Dependent Hartree. J Phys Chem Lett 2022;13:7105-7112. [PMID: 35900333 PMCID: PMC9376959 DOI: 10.1021/acs.jpclett.2c01928] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 07/19/2022] [Indexed: 05/20/2023]
14
Do TN, Nguyen HL, Caffarri S, Tan HS. Two-dimensional electronic spectroscopy of the Qx to Qy relaxation of chlorophylls a in photosystem II core complex. J Chem Phys 2022;156:145102. [DOI: 10.1063/5.0079500] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
15
Reiter S, Bäuml L, Hauer J, de Vivie-Riedle R. Q-Band relaxation in chlorophyll: new insights from multireference quantum dynamics. Phys Chem Chem Phys 2022;24:27212-27223. [DOI: 10.1039/d2cp02914f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
16
Galindo JF, Freixas VM, Tretiak S, Fernandez-Alberti S. Back-and-Forth Energy Transfer during Electronic Relaxation in a Chlorin-Perylene Dyad. J Phys Chem Lett 2021;12:10394-10401. [PMID: 34669398 DOI: 10.1021/acs.jpclett.1c03034] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
17
Cho KH, Rhee YM. Cooperation between Excitation Energy Transfer and Antisynchronously Coupled Vibrations. J Phys Chem B 2021;125:5601-5610. [PMID: 34013724 DOI: 10.1021/acs.jpcb.1c01194] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
18
Barbatti M. Velocity Adjustment in Surface Hopping: Ethylene as a Case Study of the Maximum Error Caused by Direction Choice. J Chem Theory Comput 2021;17:3010-3018. [PMID: 33844922 DOI: 10.1021/acs.jctc.1c00012] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
19
Fortino M, Collini E, Bloino J, Pedone A. Unraveling the internal conversion process within the Q-bands of a chlorophyll-like-system through surface-hopping molecular dynamics simulations. J Chem Phys 2021;154:094110. [PMID: 33685164 DOI: 10.1063/5.0039949] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
20
Erdmann E, Aguirre NF, Indrajith S, Chiarinelli J, Domaracka A, Rousseau P, Huber BA, Bolognesi P, Richter R, Avaldi L, Díaz-Tendero S, Alcamí M, Łabuda M. A general approach to study molecular fragmentation and energy redistribution after an ionizing event. Phys Chem Chem Phys 2021;23:1859-1867. [PMID: 33439170 DOI: 10.1039/d0cp04890a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
21
Negrin-Yuvero H, Freixas VM, Rodriguez-Hernandez B, Rojas-Lorenzo G, Tretiak S, Bastida A, Fernandez-Alberti S. Photoinduced Dynamics with Constrained Vibrational Motion: FrozeNM Algorithm. J Chem Theory Comput 2020;16:7289-7298. [PMID: 33201709 DOI: 10.1021/acs.jctc.0c00930] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
22
Song H, Fischer SA, Zhang Y, Cramer CJ, Mukamel S, Govind N, Tretiak S. First Principles Nonadiabatic Excited-State Molecular Dynamics in NWChem. J Chem Theory Comput 2020;16:6418-6427. [DOI: 10.1021/acs.jctc.0c00295] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
23
Malone W, Nebgen B, White A, Zhang Y, Song H, Bjorgaard JA, Sifain AE, Rodriguez-Hernandez B, Freixas VM, Fernandez-Alberti S, Roitberg AE, Nelson TR, Tretiak S. NEXMD Software Package for Nonadiabatic Excited State Molecular Dynamics Simulations. J Chem Theory Comput 2020;16:5771-5783. [DOI: 10.1021/acs.jctc.0c00248] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
24
Straub S, Stubbe J, Lindner J, Sarkar B, Vöhringer P. Vibrational Relaxation Dynamics of an Azido–Cobalt(II) Complex from Femtosecond UV-Pump/MIR-Probe Spectroscopy and Model Simulations with Ab Initio Anharmonic Couplings. Inorg Chem 2020;59:14629-14642. [DOI: 10.1021/acs.inorgchem.0c00553] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
25
Freixas VM, Tretiak S, Makhov DV, Shalashilin DV, Fernandez-Alberti S. Vibronic Quantum Beating between Electronic Excited States in a Heterodimer. J Phys Chem B 2020;124:3992-4001. [DOI: 10.1021/acs.jpcb.0c01685] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
26
Fresch E, Collini E. Relaxation Dynamics of Chlorophyll b in the Sub-ps Ultrafast Timescale Measured by 2D Electronic Spectroscopy. Int J Mol Sci 2020;21:ijms21082836. [PMID: 32325770 PMCID: PMC7215592 DOI: 10.3390/ijms21082836] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 04/16/2020] [Accepted: 04/16/2020] [Indexed: 12/19/2022]  Open
27
Nelson TR, White AJ, Bjorgaard JA, Sifain AE, Zhang Y, Nebgen B, Fernandez-Alberti S, Mozyrsky D, Roitberg AE, Tretiak S. Non-adiabatic Excited-State Molecular Dynamics: Theory and Applications for Modeling Photophysics in Extended Molecular Materials. Chem Rev 2020;120:2215-2287. [PMID: 32040312 DOI: 10.1021/acs.chemrev.9b00447] [Citation(s) in RCA: 254] [Impact Index Per Article: 50.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
28
Waters MDJ, Skov AB, Larsen MAB, Clausen CM, Weber PM, Sølling TI. Symmetry controlled excited state dynamics. Phys Chem Chem Phys 2019;21:2283-2294. [DOI: 10.1039/c8cp05950k] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
29
Ondarse-Alvarez D, Nelson T, Lupton JM, Tretiak S, Fernandez-Alberti S. Let Digons be Bygones: The Fate of Excitons in Curved π-Systems. J Phys Chem Lett 2018;9:7123-7129. [PMID: 30508376 DOI: 10.1021/acs.jpclett.8b03160] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
30
Sifain AE, Gifford BJ, Gao DW, Lystrom L, Nelson TR, Tretiak S. NEXMD Modeling of Photoisomerization Dynamics of 4-Styrylquinoline. J Phys Chem A 2018;122:9403-9411. [DOI: 10.1021/acs.jpca.8b09103] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
31
Nelson TR, Ondarse-Alvarez D, Oldani N, Rodriguez-Hernandez B, Alfonso-Hernandez L, Galindo JF, Kleiman VD, Fernandez-Alberti S, Roitberg AE, Tretiak S. Coherent exciton-vibrational dynamics and energy transfer in conjugated organics. Nat Commun 2018;9:2316. [PMID: 29899334 PMCID: PMC5998141 DOI: 10.1038/s41467-018-04694-8] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2018] [Accepted: 04/27/2018] [Indexed: 11/09/2022]  Open
32
Sifain AE, Bjorgaard JA, Nelson TR, Nebgen BT, White AJ, Gifford BJ, Gao DW, Prezhdo OV, Fernandez-Alberti S, Roitberg AE, Tretiak S. Photoexcited Nonadiabatic Dynamics of Solvated Push–Pull π-Conjugated Oligomers with the NEXMD Software. J Chem Theory Comput 2018;14:3955-3966. [DOI: 10.1021/acs.jctc.8b00103] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
33
Mallus MI, Schallwig M, Kleinekathöfer U. Relation between Vibrational Dephasing Time and Energy Gap Fluctuations. J Phys Chem B 2017. [PMID: 28625060 DOI: 10.1021/acs.jpcb.7b02693] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
34
Nelson T, Fernandez-Alberti S, Roitberg AE, Tretiak S. Electronic Delocalization, Vibrational Dynamics, and Energy Transfer in Organic Chromophores. J Phys Chem Lett 2017;8:3020-3031. [PMID: 28603994 DOI: 10.1021/acs.jpclett.7b00790] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
35
Zheng F, Fernandez-Alberti S, Tretiak S, Zhao Y. Photoinduced Intra- and Intermolecular Energy Transfer in Chlorophyll a Dimer. J Phys Chem B 2017;121:5331-5339. [DOI: 10.1021/acs.jpcb.7b02021] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
36
Nelson T, Naumov A, Fernandez-Alberti S, Tretiak S. Nonadiabatic excited-state molecular dynamics: On-the-fly limiting of essential excited states. Chem Phys 2016. [DOI: 10.1016/j.chemphys.2016.05.017] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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