1
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Yagasaki T, Matubayasi N. Molecular Dynamics Simulations of Concentrated and Dilute Aqueous Solutions of Poly( N-Isopropylacrylamide) Using a Modified OPLS-AA Model. J Phys Chem B 2025. [PMID: 40372464 DOI: 10.1021/acs.jpcb.5c00789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2025]
Abstract
We perform molecular dynamics (MD) simulations of aqueous poly(N-isopropylacrylamide) (PNIPAM) solutions using the OPLS-AA model and its modified version in combination with the TIP4P/2005 water model. The original OPLS-AA model underestimates the demixing temperature of concentrated solutions and the coil-globule transition temperature in dilute solutions, whereas the modified model reproduces both. It was reported that the transition from the globule state to the coil state never occurred in MD simulations with the original OPLS-AA model. This problem is avoided by using the modified model because of the fast dynamics near the coil-globule transition temperature, which is higher for the modified model than for the original model by ∼60 K. The distribution functions of two structural order parameters calculated from well equilibrated trajectories of the modified model clearly show that the coil-globule transition is not a discontinuous first-order transition, as suggested in previous MD studies, but a continuous transition as predicted from mean field theory. We also find that the effect of polymer-polymer hydrogen bonding on the dynamics of aggregated polymer chains is less significant than assumed in experimental studies.
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Affiliation(s)
- Takuma Yagasaki
- Division of Chemical Engineering, Graduate School of Engineering Science, Osaka University, Toyonaka 560-8531, Japan
| | - Nobuyuki Matubayasi
- Division of Chemical Engineering, Graduate School of Engineering Science, Osaka University, Toyonaka 560-8531, Japan
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2
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Nagasaka M, Yao Y, Mochizuki K. Oxygen K-edge inner-shell calculations of polymers in solutions realized by the extraction of local structures from molecular dynamics simulations. J Chem Phys 2025; 162:054901. [PMID: 39898480 DOI: 10.1063/5.0245456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2024] [Accepted: 01/09/2025] [Indexed: 02/04/2025] Open
Abstract
Inner-shell quantum chemical calculations of large molecular systems, such as polymers and soft matter in solution, were performed to understand the phase transition dynamics of these systems using soft x-ray absorption spectroscopy (XAS). The molecular structures of 40-mer poly(N-isopropylacrylamide) (PNIPAM) chains in solutions were obtained using molecular dynamics simulations. The 5-mer PNIPAM chains with terminated H atoms, including the second coordination shells of the solvent methanol and water molecules, were extracted from the 40-mer PNIPAM chains in solutions. The O K-edge inner-shell spectra of the 5-mer PNIPAM chains were obtained by averaging the inner-shell spectra of 9700 extracted polymer structures. This calculation method can be used to precisely evaluate the energy shifts of the C=O π* peaks of PNIPAM caused by the structural changes of the polymer chains, the substitutions of the hydrogen bonds of the C=O groups in PNIPAM from methanol to water molecules, and the increase in the coordination numbers of solvent molecules with the C=O groups, which were observed in the O K-edge XAS experiments.
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Affiliation(s)
- Masanari Nagasaka
- Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
- Graduate Institute for Advanced Studies, SOKENDAI, Myodaiji, Okazaki 444-8585, Japan
| | - Yifeng Yao
- Department of Chemistry, Zhejiang University, Hangzhou 310028, People's Republic of China
| | - Kenji Mochizuki
- Department of Chemistry, Zhejiang University, Hangzhou 310028, People's Republic of China
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3
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Shi Y, He X. Effect of Tacticity Sequence of the Poly( N-isopropylacrylamide) Oligomer on Phase Transition Behavior in Aqueous Solution. J Phys Chem B 2023; 127:8660-8668. [PMID: 37756642 DOI: 10.1021/acs.jpcb.3c03765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/29/2023]
Abstract
The tacticity of poly(N-isopropylacrylamide) (PNIPAM) has a strong impact on the lower critical solution temperature (LCST) in aqueous solution. The sequence of meso diads (m) and racemo diads (r) further contributes to such an effect. In this work, the phase transition behaviors of poly(N-isopropylacrylamide) pentamers with four kinds of sequences, i.e., rrmm, rmmr, mrrm, and rmrm, in water were studied applying replica exchange molecular dynamics with a modified OPLS/AA force field. The difference in local component concentration in the system was used as an order parameter to quantitatively describe the phase separation extent. It was found that the phase separation degree of rrmm and rmmr is higher than that of mrrm and rmrm at the same temperature. The LCSTs of rrmm and rmmr are lower than those of mrrm and rmrm. The radial distribution function and hydrogen bond analysis revealed that the average values of hydrogen bonds between pentamers for rrmm and rmmr are greater than those of mrrm and rmrm, whereas the average values of hydrogen bonds between pentamers and water for rrmm and rmmr are less than those of mrrm and rmrm. It was demonstrated that the isotactic triad (mm) plays an important role in the thermosensitive behaviors of the PNIPAM pentamer. The increase of isotactic triad (mm) content in the PNIPAM chain promotes the formation of intermolecular hydrogen bonds between amide and amide and leads to a higher aggregation of the pentamer with the sequence of rrmm or rmmr. Finally, the effect of the isotactic triad was qualitatively explained with the mean-field theory.
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Affiliation(s)
- Yi Shi
- Department of Chemistry, School of Science, Tianjin University, 300072 Tianjin, China
| | - Xuehao He
- Department of Chemistry, School of Science, Tianjin University, 300072 Tianjin, China
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4
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Tavagnacco L, Zaccarelli E, Chiessi E. Modeling Solution Behavior of Poly( N-isopropylacrylamide): A Comparison between Water Models. J Phys Chem B 2022; 126:3778-3788. [PMID: 35491838 PMCID: PMC9150113 DOI: 10.1021/acs.jpcb.2c00637] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
![]()
Water is known to
play a fundamental role in determining the structure
and functionality of macromolecules. The same crucial contribution
is also found in the in silico description of polymer aqueous solutions.
In this work, we exploit the widely investigated synthetic polymer
poly(N-isopropylacrylamide) (PNIPAM) to understand
the effect of the adopted water model on its solution behavior and
to refine the computational setup. By means of atomistic molecular
dynamics simulations, we perform a comparative study of PNIPAM aqueous
solution using two advanced water models: TIP4P/2005 and TIP4P/Ice.
The conformation and hydration features of an atactic 30-mer at infinite
dilution are probed at a range of temperature and pressure suitable
to detect the coil-to-globule transition and to map the P–T
phase diagram. Although both water models can reproduce the temperature-induced
coil-to-globule transition at atmospheric pressure and the polymer
hydration enhancement that occurs with increasing pressure, the PNIPAM–TIP4P/Ice
solution shows better agreement with experimental findings. This result
can be attributed to a stronger interaction of TIP4P/Ice water with
both hydrophilic and hydrophobic groups of PNIPAM, as well as to a
less favorable contribution of the solvent entropy to the coil-to-globule
transition.
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Affiliation(s)
- Letizia Tavagnacco
- CNR-ISC and Department of Physics, Sapienza University of Rome, Piazzale A, Moro 2, Rome 00185, Italy
| | - Emanuela Zaccarelli
- CNR-ISC and Department of Physics, Sapienza University of Rome, Piazzale A, Moro 2, Rome 00185, Italy
| | - Ester Chiessi
- Department of Chemical Sciences and Technologies, University of Rome Tor Vergata, Via della Ricerca Scientifica I, Rome 00133, Italy
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5
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Bharadwaj S, Niebuur BJ, Nothdurft K, Richtering W, van der Vegt NFA, Papadakis CM. Cononsolvency of thermoresponsive polymers: where we are now and where we are going. SOFT MATTER 2022; 18:2884-2909. [PMID: 35311857 DOI: 10.1039/d2sm00146b] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Cononsolvency is an intriguing phenomenon where a polymer collapses in a mixture of good solvents. This cosolvent-induced modulation of the polymer solubility has been observed in solutions of several polymers and biomacromolecules, and finds application in areas such as hydrogel actuators, drug delivery, compound detection and catalysis. In the past decade, there has been a renewed interest in understanding the molecular mechanisms which drive cononsolvency with a predominant emphasis on its connection to the preferential adsorption of the cosolvent. Significant efforts have also been made to understand cononsolvency in complex systems such as micelles, block copolymers and thin films. In this review, we will discuss some of the recent developments from the experimental, simulation and theoretical fronts, and provide an outlook on the problems and challenges which are yet to be addressed.
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Affiliation(s)
- Swaminath Bharadwaj
- Technical University of Darmstadt, Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Computational Physical Chemistry Group, 64287 Darmstadt, Germany.
| | - Bart-Jan Niebuur
- Technical University of Munich, Physics Department, Soft Matter Physics Group, James-Franck-Str. 1, 85748 Garching, Germany
| | - Katja Nothdurft
- RWTH Aachen University, Institut für Physikalische Chemie, Landoltweg 2, 52056 Aachen, Germany, European Union
| | - Walter Richtering
- RWTH Aachen University, Institut für Physikalische Chemie, Landoltweg 2, 52056 Aachen, Germany, European Union
| | - Nico F A van der Vegt
- Technical University of Darmstadt, Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Computational Physical Chemistry Group, 64287 Darmstadt, Germany.
| | - Christine M Papadakis
- Technical University of Munich, Physics Department, Soft Matter Physics Group, James-Franck-Str. 1, 85748 Garching, Germany
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6
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Karimi K, Rahsepar M. Optimization of the Urea Removal in a Wearable Dialysis Device Using Nitrogen-Doped and Phosphorus-Doped Graphene. ACS OMEGA 2022; 7:4083-4094. [PMID: 35155902 PMCID: PMC8829914 DOI: 10.1021/acsomega.1c05495] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Accepted: 01/12/2022] [Indexed: 05/31/2023]
Abstract
Dialysis has been recognized as an essential treatment for end-stage renal disease (ESRD). This therapy, however, suffers from several limitations leading to numerous complications in the patients. As dialysis cannot completely substitute healthy kidney functions, the health condition of an ESRD patient is ultimately affected. Wearable artificial kidney (WAK) can resolve the restrictions of blood purification by the dialysis method. However, absorbing large amounts of urea produced in the body is one of the main challenges of these WAK and overcoming this is necessary to improve both functionality and footprint of the device. This study investigates the adsorption capabilities of N- and P-doped graphene nanosorbents for the first time by using molecular dynamic simulation. Urea removal on carbon nanosheets was simulated with different percentages of phosphorus and nitrogen dopants along with the pristine graphene. Specifically, the effects of interaction energy, adsorption percentage, gyration radius, hydrogen bonding, and other molecular dynamic analyses on urea removal were also investigated. The results from this study match well with the existing research, demonstrating the accuracy of the model. The results further suggest that graphene nanosheets doped by 10% nitrogen are likely the most effective in removing urea given that it is associated with the maximum radial distribution function (RDF), the maximum reduction in gyration radius, a high number of hydrogen bonds, and the most negative adsorption energy. This molecular study offers attractive suggestions for the novel adsorbents of artificial kidney devices and paves the way for the development of novel and enhanced urea adsorbents.
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Affiliation(s)
- Keyvan Karimi
- Department of Materials Science
and Engineering, School of Engineering, Shiraz University, Zand Boulevard, Shiraz 7134851154, Iran
| | - Mansour Rahsepar
- Department of Materials Science
and Engineering, School of Engineering, Shiraz University, Zand Boulevard, Shiraz 7134851154, Iran
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7
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Zhao Y, Bharadwaj S, van der Vegt N. Nonadditive ion effects on the coil-globule equilibrium of PNIPAM: A computer simulation study. Phys Chem Chem Phys 2022; 24:10346-10355. [DOI: 10.1039/d2cp00057a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The combined effect of a weakly hydrated and a strongly hydrated anion on the lower critical solution temperature (LCST) of poly(N-isopropylacrylamide)(PNIPAM) is nonadditive (Bruce et al. J. Am. Chem. Soc....
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8
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Quoika P, Fernández-Quintero ML, Podewitz M, Hofer F, Liedl KR. Implementation of the Freely Jointed Chain Model to Assess Kinetics and Thermodynamics of Thermosensitive Coil-Globule Transition by Markov States. J Phys Chem B 2021; 125:4898-4909. [PMID: 33942614 PMCID: PMC8154620 DOI: 10.1021/acs.jpcb.1c01946] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 04/12/2021] [Indexed: 12/30/2022]
Abstract
We revived and implemented a method developed by Kuhn in 1934, originally only published in German, that is, the so-called "freely jointed chain" model. This approach turned out to be surprisingly useful for analyzing state-of-the-art computer simulations of the thermosensitive coil-globule transition of N-Isopropylacrylamide 20-mer. Our atomistic computer simulations are orders of magnitude longer than those of previous studies and lead to a reliable description of thermodynamics and kinetics at many different temperatures. The freely jointed chain model provides a coordinate system, which allows us to construct a Markov state model of the conformational transitions. Furthermore, this guarantees a reliable reconstruction of the kinetics in back-and-forth directions. In addition, we obtain a description of the high diversity and variability of both conformational states. Thus, we gain a detailed understanding of the coil-globule transition. Surprisingly, conformational entropy turns out to play only a minor role in the thermodynamic balance of the process. Moreover, we show that the radius of gyration is an unexpectedly unsuitable coordinate to comprehend the transition kinetics because it does not capture the high conformational diversity within the different states. Consequently, the approach presented here allows for an exhaustive description and resolution of the conformational ensembles of arbitrary linear polymer chains.
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Affiliation(s)
- Patrick
K. Quoika
- Institute of General, Inorganic
and Theoretical Chemistry, and Centre of Molecular Biosciences University
of Innsbruck, A-6020 Innsbruck, Austria
| | - Monica L. Fernández-Quintero
- Institute of General, Inorganic
and Theoretical Chemistry, and Centre of Molecular Biosciences University
of Innsbruck, A-6020 Innsbruck, Austria
| | - Maren Podewitz
- Institute of General, Inorganic
and Theoretical Chemistry, and Centre of Molecular Biosciences University
of Innsbruck, A-6020 Innsbruck, Austria
| | - Florian Hofer
- Institute of General, Inorganic
and Theoretical Chemistry, and Centre of Molecular Biosciences University
of Innsbruck, A-6020 Innsbruck, Austria
| | - Klaus R. Liedl
- Institute of General, Inorganic
and Theoretical Chemistry, and Centre of Molecular Biosciences University
of Innsbruck, A-6020 Innsbruck, Austria
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9
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Miri Jahromi A, Zandi P, Khedri M, Ghasemy E, Maleki R, Tayebi L. Molecular insight into optimizing the N- and P-doped fullerenes for urea removal in wearable artificial kidneys. JOURNAL OF MATERIALS SCIENCE. MATERIALS IN MEDICINE 2021; 32:49. [PMID: 33891249 PMCID: PMC8065003 DOI: 10.1007/s10856-021-06525-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 04/01/2021] [Indexed: 06/12/2023]
Abstract
Urea is the result of the breakdown of proteins in the liver, the excess of which circulates in the blood and is adsorbed by the kidneys. However, in the case of kidney diseases, some products, specifically urea, cannot be removed from the blood by the kidneys and causes serious health problems. The end-stage renal disease (ESRD) patients are not able to purify their blood, which endangers their life. ESRD patients require dialysis, a costly and difficult method of urea removal from the blood. Wearable artificial kidneys (WAKs) are consequently designed to remove the waste from blood. Regarding the great amount of daily urea production in the body, WAKs should contain strong and selective urea adsorbents. Fullerenes-which possess fascinating chemical properties-have been considered herein to develop novel urea removal adsorbents. Molecular dynamics (MD) has enabled researchers to study the interaction of different materials and can pave the way toward facilitating the development of wearable devices. In this study, urea adsorption by N-doped fullerenes and P-doped fullerenes were assessed through MD simulations. The urea adsorption was simulated by five samples of fullerenes, with phosphorous and different nitrogen dopant contents. For comparing the urea adsorption capacity in the performed simulations, detailed characteristics-including the energy analysis, radius of gyration, radial distribution function (RDF), root-mean-square fluctuation (RMSD), and H-bond analyses were investigated. It had been determined that the fullerene containing 8% nitrogen-with the highest reduction in the radius of gyration, the maximum RDF, a high adsorption energy, and a high number of hydrogen bonds-adsorbs urea more efficiently.
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Affiliation(s)
- Ahmad Miri Jahromi
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran
| | - Pegah Zandi
- School of Metallurgy and Materials Engineering, College of Engineering, University of Tehran, Tehran, Iran
| | - Mohammad Khedri
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran
| | - Ebrahim Ghasemy
- Nanotechnology Department, School of New Technologies, Iran University of Science and Technology, Tehran, Iran
| | - Reza Maleki
- Computational Biology and Chemistry Group (CBCG), Universal Scientific Education and Research Network (USERN), Tehran, Iran.
| | - Lobat Tayebi
- Marquette University School of Dentistry, Milwaukee, WI, 53233, USA.
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10
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Bharadwaj S, Nayar D, Dalgicdir C, van der Vegt NFA. An interplay of excluded-volume and polymer-(co)solvent attractive interactions regulates polymer collapse in mixed solvents. J Chem Phys 2021; 154:134903. [PMID: 33832270 DOI: 10.1063/5.0046746] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
Cosolvent effects on the coil-globule transitions in aqueous polymer solutions are not well understood, especially in the case of amphiphilic cosolvents that preferentially adsorb on the polymer and lead to both polymer swelling and collapse. Although a predominant focus in the literature has been placed on the role of polymer-cosolvent attractive interactions, our recent work has shown that excluded-volume interactions (repulsive interactions) can drive both preferential adsorption of the cosolvent and polymer collapse via a surfactant-like mechanism. Here, we further study the role of polymer-(co)solvent attractive interactions in two kinds of polymer solutions, namely, good solvent (water)-good cosolvent (alcohol) (GSGC) and poor solvent-good cosolvent (PSGC) solutions, both of which exhibit preferential adsorption of the cosolvent and a non-monotonic change in the polymer radius of gyration with the addition of the cosolvent. Interestingly, at low concentrations, the polymer-(co)solvent energetic interactions oppose polymer collapse in the GSGC solutions and contrarily support polymer collapse in the PSGC solutions, indicating the importance of the underlying polymer chemistry. Even though the alcohol molecules are preferentially adsorbed on the polymer, the trends of the energetic interactions at low cosolvent concentrations are dominated by the polymer-water energetic interactions in both the cases. Therefore, polymer-(co)solvent energetic interactions can either reinforce or compensate the surfactant-like mechanism, and it is this interplay that drives coil-to-globule transitions in polymer solutions. These results have implications for rationalizing the cononsolvency transitions in real systems such as polyacrylamides in aqueous alcohol solutions where the understanding of microscopic driving forces is still debatable.
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Affiliation(s)
- Swaminath Bharadwaj
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, 64287 Darmstadt, Germany
| | - Divya Nayar
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, 64287 Darmstadt, Germany
| | - Cahit Dalgicdir
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, 64287 Darmstadt, Germany
| | - Nico F A van der Vegt
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, 64287 Darmstadt, Germany
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11
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Tavagnacco L, Chiessi E, Zaccarelli E. Molecular insights on poly( N-isopropylacrylamide) coil-to-globule transition induced by pressure. Phys Chem Chem Phys 2021; 23:5984-5991. [PMID: 33666621 PMCID: PMC8247264 DOI: 10.1039/d0cp06452a] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 02/17/2021] [Indexed: 12/17/2022]
Abstract
By using extensive all-atom molecular dynamics simulations of an atactic linear polymer chain, we provide microscopic insights into poly(N-isopropylacrylamide) (PNIPAM) coil-to-globule transition addressing the roles played by both temperature and pressure. We detect a coil-to-globule transition up to large pressures, showing a reentrant behavior of the critical temperature with increasing pressure in agreement with experimental observations. Furthermore, again confirming the experimental findings, we report the existence at high pressures of a new kind of globular state. It is characterized by a more structured hydration shell that is closer to PNIPAM hydrophobic domains, as compared to the globular state observed at atmospheric pressure. Our results highlight that temperature and pressure induce a PNIPAM coil-to-globule transition through different molecular mechanisms, opening the way for a systematic use of both thermodynamic variables to tune the location of the transition and the properties of the associated swollen/collapsed states.
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Affiliation(s)
- Letizia Tavagnacco
- CNR-ISC and Department of Physics, Sapienza University of Rome, Piazzale A. Moro 2, 00185, Rome, Italy.
| | - Ester Chiessi
- Department of Chemical Sciences and Technologies, University of Rome Tor Vergata, Via della Ricerca Scientifica I, 00133, Rome, Italy.
| | - Emanuela Zaccarelli
- CNR-ISC and Department of Physics, Sapienza University of Rome, Piazzale A. Moro 2, 00185, Rome, Italy.
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12
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Rick SW. Insights into the Thermal Response of a Poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) Triblock Polymer in Water. J Phys Chem B 2021; 125:2167-2173. [PMID: 33606935 DOI: 10.1021/acs.jpcb.0c11279] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A thermal responsive block copolymer made up of ethylene oxide (EO) and propylene oxide (PO) blocks was simulated with optimized atomistic potentials and enhanced sampling methods over a range of temperatures. The results for the L42 pluronic polymer (EO)4(PO)22(EO)4, which is known to undergo a transition in this temperature range, and the similarly sized (EO)30 polymer, which does not, are compared. The thermal responsive L42 polymers in a dilute solution tend to aggregate, and this tendency gets stronger as temperature increases. The poly(ethylene oxide) polymer shows no such tendency. The aggregation is stabilized by the hydrophobic contact of the propylene oxide methyl groups, which outweighs a small loss in hydrogen bonds between the ether oxygens and water.
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Affiliation(s)
- Steven W Rick
- Department of Chemistry, University of New Orleans, New Orleans, Louisiana 70148, United States
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13
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Bruce EE, Bui PT, Cao M, Cremer PS, van der Vegt NFA. Contact Ion Pairs in the Bulk Affect Anion Interactions with Poly( N-isopropylacrylamide). J Phys Chem B 2021; 125:680-688. [PMID: 33406822 DOI: 10.1021/acs.jpcb.0c11076] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Salt effects on the solubility of uncharged polymers in aqueous solutions are usually dominated by anions, while the role of the cation with which they are paired is often ignored. In this study, we examine the influence of three aqueous metal iodide salt solutions (LiI, NaI, and CsI) on the phase transition temperature of poly(N-isopropylacrylamide) (PNIPAM) by measuring the turbidity change of the solutions. Weakly hydrated anions, such as iodide, are known to interact with the polymer and thereby lead to salting-in behavior at low salt concentration followed by salting-out behavior at higher salt concentration. When varying the cation type, an unexpected salting-out trend is observed at higher salt concentrations, Cs+ > Na+ > Li+. Using molecular dynamics simulations, it is demonstrated that this originates from contact ion pair formation in the bulk solution, which introduces a competition for iodide ions between the polymer and cations. The weakly hydrated cation, Cs+, forms contact ion pairs with I- in the bulk solution, leading to depletion of CsI from the polymer-water interface. Microscopically, this is correlated with the repulsion of iodide ions from the amide moiety.
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Affiliation(s)
- Ellen E Bruce
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, D-64287 Darmstadt, Germany
| | - Pho T Bui
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Mengrui Cao
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Paul S Cremer
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.,Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Nico F A van der Vegt
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, D-64287 Darmstadt, Germany
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14
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A cosolvent surfactant mechanism affects polymer collapse in miscible good solvents. Commun Chem 2020; 3:165. [PMID: 36703319 PMCID: PMC9814688 DOI: 10.1038/s42004-020-00405-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 10/14/2020] [Indexed: 01/29/2023] Open
Abstract
The coil-globule transition of aqueous polymers is of profound significance in understanding the structure and function of responsive soft matter. In particular, the remarkable effect of amphiphilic cosolvents (e.g., alcohols) that leads to both swelling and collapse of stimuli-responsive polymers has been hotly debated in the literature, often with contradictory mechanisms proposed. Using molecular dynamics simulations, we herein demonstrate that alcohols reduce the free energy cost of creating a repulsive polymer-solvent interface via a surfactant-like mechanism which surprisingly drives polymer collapse at low alcohol concentrations. This hitherto neglected role of interfacial solvation thermodynamics is common to all coil-globule transitions, and rationalizes the experimentally observed effects of higher alcohols and polymer molecular weight on the coil-to-globule transition of thermoresponsive polymers. Polymer-(co)solvent attractive interactions reinforce or compensate this mechanism and it is this interplay which drives polymer swelling or collapse.
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15
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Entropy Rules: Molecular Dynamics Simulations of Model Oligomers for Thermoresponsive Polymers. ENTROPY 2020; 22:e22101187. [PMID: 33286955 PMCID: PMC7597358 DOI: 10.3390/e22101187] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 10/02/2020] [Accepted: 10/09/2020] [Indexed: 11/17/2022]
Abstract
We attempted to attain atomic-scale insights into the mechanism of the heat-induced phase transition of two thermoresponsive polymers containing amide groups, poly(N-isopropylacrylamide) (PNIPAM) and poly(2-isopropyl-2-oxazoline) (PIPOZ), and we succeeded in reproducing the existence of lower critical solution temperature (LCST). The simulation data are in accord with experimental findings. We found out that the entropy has an important contribution to the thermodynamics of the phase separation transition. Moreover, after decomposing further the entropy change to contributions from the solutes and from the solvent, it appeared out that the entropy of the solvent has the decisive share for the lowering of the free energy of the system when increasing the temperature above the LCST. Our conclusion is that the thermoresponsive behavior is driven by the entropy of the solvent. The water molecules structured around the functional groups of the polymer that are exposed to contact with the solvent in the extended conformation lower the enthalpy of the system, but at certain temperature the extended conformation of the polymer collapses as a result of dominating entropy gain from “released” water molecules. We stress also on the importance of using more than one reference molecule in the simulation box at the setup of the simulation.
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Alimohammadi E, Khedri M, Miri Jahromi A, Maleki R, Rezaian M. Graphene-Based Nanoparticles as Potential Treatment Options for Parkinson's Disease: A Molecular Dynamics Study. Int J Nanomedicine 2020; 15:6887-6903. [PMID: 32982240 PMCID: PMC7509323 DOI: 10.2147/ijn.s265140] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 09/08/2020] [Indexed: 12/20/2022] Open
Abstract
INTRODUCTION The study of abnormal aggregation of proteins in different tissues of the body has recently earned great attention from researchers in various fields of science. Concerning neurological diseases, for instance, the accumulation of amyloid fibrils can contribute to Parkinson's disease, a progressively severe neurodegenerative disorder. The most prominent features of this disease are the degeneration of neurons in the substantia nigra and accumulation of α-synuclein aggregates, especially in the brainstem, spinal cord, and cortical areas. Dopamine replacement therapies and other medications have reduced motor impairment and had positive consequences on patients' quality of life. However, if these medications are stopped, symptoms of the disease will recur even more severely. Therefore, the improvement of therapies targeting more basic mechanisms like prevention of amyloid formation seems to be critical. It has been shown that the interactions between monolayers like graphene and amyloids could prevent their fibrillation. METHODS For the first time, the impact of four types of last-generation graphene-based nanostructures on the prevention of α-synuclein amyloid fibrillation was investigated in this study by using molecular dynamics simulation tools. RESULTS Although all monolayers were shown to prevent amyloid fibrillation, nitrogen-doped graphene (N-Graphene) caused the most instability in the secondary structure of α-synuclein amyloids. Moreover, among the four monolayers, N-Graphene was shown to present the highest absolute value of interaction energy, the lowest contact level of amyloid particles, the highest number of hydrogen bonds between water and amyloid molecules, the highest instability caused in α-synuclein particles, and the most significant decrease in the compactness of α-synuclein protein. DISCUSSION Ultimately, it was concluded that N-Graphene could be the most effective monolayer to disrupt amyloid fibrillation, and consequently, prevent the progression of Parkinson's disease.
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Affiliation(s)
- Ehsan Alimohammadi
- Neurosurgery Department, Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Mohammad Khedri
- Department of Chemical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran1591634311, Iran
| | - Ahmad Miri Jahromi
- Department of Petroleum Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran1591634311, Iran
| | - Reza Maleki
- Department of Chemical Engineering, Sharif University of Technology, Tehran, Iran
| | - Milad Rezaian
- Department of Pharmacology, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran19839-63113, Iran
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Zanatta M, Tavagnacco L, Buratti E, Chiessi E, Natali F, Bertoldo M, Orecchini A, Zaccarelli E. Atomic scale investigation of the volume phase transition in concentrated PNIPAM microgels. J Chem Phys 2020; 152:204904. [PMID: 32486676 DOI: 10.1063/5.0007112] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Combining elastic incoherent neutron scattering and differential scanning calorimetry, we investigate the occurrence of the volume phase transition (VPT) in very concentrated poly-(N-isopropyl-acrylamide) (PNIPAM) microgel suspensions, from a polymer weight fraction of 30 wt. % up to dry conditions. Although samples are arrested at the macroscopic scale, atomic degrees of freedom are equilibrated and can be probed in a reproducible way. A clear signature of the VPT is present as a sharp drop in the mean square displacement of PNIPAM hydrogen atoms obtained by neutron scattering. As a function of concentration, the VPT gets smoother as dry conditions are approached, whereas the VPT temperature shows a minimum at about 43 wt. %. This behavior is qualitatively confirmed by calorimetry measurements. Molecular dynamics simulations are employed to complement experimental results and gain further insights into the nature of the VPT, confirming that it involves the formation of an attractive gel state between the microgels. Overall, these results provide evidence that the VPT in PNIPAM-based systems can be detected at different time- and length-scales as well as under overcrowded conditions.
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Affiliation(s)
- M Zanatta
- Department of Physics, University of Trento, I-38123 Trento, Italy
| | - L Tavagnacco
- CNR-ISC and Department of Physics, Sapienza University of Rome, I-00185 Roma, Italy
| | - E Buratti
- CNR-ISC and Department of Physics, Sapienza University of Rome, I-00185 Roma, Italy
| | - E Chiessi
- Department of Chemical Sciences and Technologies, University of Rome Tor Vergata, I-00133 Roma, Italy
| | - F Natali
- CNR-IOM, Operative Group in Grenoble (OGG), c/o Institut Laue Langevin, F-38042 Grenoble, France
| | - M Bertoldo
- Department of Chemical and Pharmaceutical Sciences, University of Ferrara, I-44121 Ferrara, Italy
| | - A Orecchini
- Department of Physics and Geology, University of Perugia, I-06123 Perugia, Italy
| | - E Zaccarelli
- CNR-ISC and Department of Physics, Sapienza University of Rome, I-00185 Roma, Italy
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Narang P, de Oliveira TE, Venkatesu P, Netz PA. The role of osmolytes in the temperature-triggered conformational transition of poly(N-vinylcaprolactam): an experimental and computational study. Phys Chem Chem Phys 2020; 22:5301-5313. [PMID: 32096507 DOI: 10.1039/c9cp06683g] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Biomedical industries are widely exploring the use of thermo-responsive polymers (TRPs) in the advanced development of drug delivery and in many other pharmaceutical applications. There is a great need to investigate the use of less toxic and more (bio-)compatible TRPs employing several additives, which could modify the conformational transition behavior of TRPs in aqueous solution. To move forward in this aspect, we have chosen the less toxic bio-based polymer poly(N-vinylcaprolactam) (PVCL) and three different methylamine-based osmolytes, trimethylamine N-oxide (TMAO), betaine and sarcosine, in order to investigate their particular interactions with the polymer segments in PVCL and therefore the corresponding changes in the thermo-responsive conformational behavior. Several biophysical techniques, UV-visible spectroscopy, fluorescence spectroscopy, dynamic light scattering (DLS) and laser Raman spectroscopy, as well as classical computer simulation methods such as molecular dynamics are employed in the current work. All the studied methylamines are found to favor the hydrophobic collapse of the polymer thus stabilizing the globular state of PVCL. Sarcosine is observed to cause the maximum decrease in lower critical solution temperature (LCST) of PVCL followed by TMAO and then betaine. The differences observed in the LCST values of PVCL in the presence of these molecules can be attributed to the different polymer-osmolyte interactions. The less sterically hindered N atom in the case of sarcosine causes a significant difference in the phase transition temperature values of PVCL compared to betaine and TMAO, where the nitrogen atom is buried by three methyl groups attached to it.
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Affiliation(s)
- Payal Narang
- Department of Chemistry, University of Delhi, Delhi-110007, India.
| | | | | | - Paulo A Netz
- Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
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Ortiz de Solorzano I, Bejagam KK, An Y, Singh SK, Deshmukh SA. Solvation dynamics of N-substituted acrylamide polymers and the importance for phase transition behavior. SOFT MATTER 2020; 16:1582-1593. [PMID: 31951239 DOI: 10.1039/c9sm01798d] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Functional groups present in thermo-responsive polymers are known to play an important role in aqueous solutions by manifesting their coil-to-globule conformational transition in a specific temperature range. Understanding the role of these functional groups and their interactions with water is of great interest as it may allow us to control both the nature and temperature of this coil-to-globule transition. In this work, polyacrylamide (PAAm), poly(N-isopropylacrylamide) (PNIPAm), and poly(N-isopropylmethacrylamide) (PNIPMAm) solvated in water are studied with the goal of discovering the structure of the solvent and its interaction with these polymers in determining the polymer conformations. Specifically, all-atom molecular dynamics (MD) simulations were performed on polymer chains with 30 monomer units (30-mers) at 295 K, 310 K and 320 K, which is below and above the lower critical solution temperature (LCST) of PNIPAm (LCST = 305 K) and PNIPMAm (LCST = 315 K), respectively. The MD simulation trajectories suggest that changes in the functional groups in the backbone and side-chains alter the water solvation shell around the polymer. This results in a change in the residence time probability and hydrogen bond characteristics of water at simulated temperatures. Specifically, water molecules reside for longer times near PAAm (no LCST) and PNIPMAm (LCST = 315 K) chains as compared to PNIPAm. This might be one of the possible causes for the higher LCST of PNIPMAm as compared to that of PNIPAm. These results can guide experimentalists and theoreticians to design new polymer structures with tailor-made LCST transitions while controlling the water solvation shell around the functional group.
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Affiliation(s)
- Isabel Ortiz de Solorzano
- Department of Chemical Engineering, Aragon Institute of Nanoscience (INA), University of Zaragoza, Campus Río Ebro-Edificio I+D, C/Poeta Mariano Esquillor S/N, 50018-Zaragoza, Spain
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Mochizuki K. Reduction of water-mediated repulsion drives poly(N-vinylcaprolactam) collapse upon heating. Phys Chem Chem Phys 2020; 22:1053-1060. [PMID: 31867584 DOI: 10.1039/c9cp05491j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Thermo-sensitive aqueous polymers undergo a coil-to-globule transition on heating, with drastic chemical and structural changes. We performed molecular dynamics simulations for PVCL in water to study the driving forces for the polymer's collapse.
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Affiliation(s)
- Kenji Mochizuki
- Department of Chemistry and Materials
- Faculty of Textile Science and Technology
- Shinshu University
- Nagano 386-8567
- Japan
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Pérez-Ramírez HA, Odriozola G. A coil-to-globule transition capable coarse-grained model for poly(N-isopropylacrylamide). Phys Chem Chem Phys 2020; 22:17913-17921. [PMID: 32744283 DOI: 10.1039/d0cp03101a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
We present a model for mesoscopic molecular dynamics simulations of poly(N-isopropyl-acrylamide) (pNIPAM).
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Affiliation(s)
- H. A. Pérez-Ramírez
- Área de Física de Procesos Irreversibles
- División de Ciencias Básicas e Ingeniería
- Universidad Autónoma Metropolitana-Azcapotzalco
- 02200 Ciudad de México
- Mexico
| | - G. Odriozola
- Área de Física de Procesos Irreversibles
- División de Ciencias Básicas e Ingeniería
- Universidad Autónoma Metropolitana-Azcapotzalco
- 02200 Ciudad de México
- Mexico
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22
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Pica A, Graziano G. Effect of sodium thiocyanate and sodium perchlorate on poly(N-isopropylacrylamide) collapse. Phys Chem Chem Phys 2019; 22:189-195. [PMID: 31799525 DOI: 10.1039/c9cp05706d] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The T(collapse) of poly(N-isopropylacrylamide), PNIPAM, shows a nonlinear dependence on the concentration of NaSCN or NaClO4; in the case of NaClO4, for example, at very low concentrations of the salt, T(collapse) increases with the concentration, while it has an opposite trend at higher NaClO4 concentrations [J. Am. Chem. Soc., 2005, 127, 14505]. These puzzling experimental data can be rationalized by considering that low charge density and poorly hydrated ions, such as thiocyanate and perchlorate, interact preferentially with the surface of the polymer, and cause an increase of the magnitude of the energetic term that stabilizes swollen conformations at low salt concentrations. However, as both swollen and collapsed PNIPAM conformations are accessible to such ions in view of their large conformational freedom, the difference in the number of ions bound to PNIPAM surface upon collapse changes little on increasing the salt concentration. Thus, the energetic term that favors swollen conformations increases with salt concentration to a lesser extent than the solvent-excluded volume term (linked to the density increase caused by salt addition to water), that favors collapsed conformations, leading to a nonlinear trend of T(collapse).
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Affiliation(s)
- Andrea Pica
- European Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, Grenoble, France
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Podewitz M, Wang Y, Quoika PK, Loeffler JR, Schauperl M, Liedl KR. Coil-Globule Transition Thermodynamics of Poly( N-isopropylacrylamide). J Phys Chem B 2019; 123:8838-8847. [PMID: 31545046 DOI: 10.1021/acs.jpcb.9b06125] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Thermosensitive polymers such as poly(N-isopropylacrylamide) (PNIPAM) undergo a phase transition in aqueous solution from a random-coil structural ensemble to a globule structural ensemble at the lower critical solution temperature (LCST). Above this temperature, PNIPAM agglomerates and becomes insoluble, whereas it is soluble below the temperature. Thus, thermosensitive polymers represent essential targets for several applications, e.g., in drug delivery. Although their ability to change structure in response to a temperature alteration is highly relevant for industrial processes, their thermodynamic properties are mostly qualitatively understood, and the quantitative thermodynamic picture is still elusive. In this study, we used a combined atomistic molecular dynamics and well-tempered metadynamics simulation approach to estimate coil-globule transition thermodynamics. An isotactic 30-mer of PNIPAM was investigated over a broad temperature range between 200 and 360 K. The transition from the globule to the random-coil structure was observed with well-tempered metadynamics. For the first time, the free energy surface of PNIPAM was estimated and it is shown that the simulation results are in line with the experimentally observed thermosensitive behavior. Below the LCST, the random-coil ensemble represents the global energy minimum and is thermodynamically favored by 21 ± 9 kJ/mol compared to the globule ensemble; both are separated by a barrier of 49 ± 14 kJ/mol. In contrast, above the LCST, the globule ensemble is thermodynamically favored by 21 ± 8 kJ/mol over the random-coil ensemble. The barrier from random-coil to globule is 17 ± 10 kJ/mol.
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Affiliation(s)
- Maren Podewitz
- Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI) , University of Innsbruck , Innrain 80-82 , A-6020 Innsbruck , Austria
| | - Yin Wang
- Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI) , University of Innsbruck , Innrain 80-82 , A-6020 Innsbruck , Austria
| | - Patrick K Quoika
- Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI) , University of Innsbruck , Innrain 80-82 , A-6020 Innsbruck , Austria
| | - Johannes R Loeffler
- Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI) , University of Innsbruck , Innrain 80-82 , A-6020 Innsbruck , Austria
| | - Michael Schauperl
- Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI) , University of Innsbruck , Innrain 80-82 , A-6020 Innsbruck , Austria
| | - Klaus R Liedl
- Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI) , University of Innsbruck , Innrain 80-82 , A-6020 Innsbruck , Austria
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24
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Bruce EE, van der Vegt NFA. Molecular Scale Solvation in Complex Solutions. J Am Chem Soc 2019; 141:12948-12956. [DOI: 10.1021/jacs.9b03469] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Ellen E. Bruce
- Eduard-Zintl-Institut für Anorganische und
Physikalische Chemie, Technische Universität Darmstadt, D-64287 Darmstadt, Germany
| | - Nico F. A. van der Vegt
- Eduard-Zintl-Institut für Anorganische und
Physikalische Chemie, Technische Universität Darmstadt, D-64287 Darmstadt, Germany
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