Chlorine "Equatorial Belt" Activation of CF3Cl by CO2: The C···Cl Tetrel Bond Dominance in CF3Cl-CO2

Molecular insights into odorant recognition: Rotational and docking studies of 3-methylcyclopentane-1,2-dione and its monohydrate

The binding behavior of 3-methylcyclopentane-1,2-dione, a cyclic α-diketone with a caramel-like aroma, was investigated to elucidate molecular mechanisms of olfactory recognition. Using Fourier-transform microwave spectroscopy complemented with quantum chemical calculations, the structures of 3-methylcyclopentane-1,2-dione and its monohydrate were determined, revealing the preferred conformation of the monomer and structural changes upon complexation with water. Intramolecular hydrogen bond weakening was observed, indicating significant rearrangements, as further supported by non-covalent interaction and quantum theory analyses. Molecular docking demonstrates how these structural adaptations facilitate ligand-protein interactions, providing a microscopic framework for understanding diketone binding within odorant-binding proteins.

Complex Dance of Molecules in the Sky: Choreography of Intermolecular Structure and Dynamics in the Cyclopentene-CO2-H2O Hetero Ternary Cluster

This study delves into driving forces behind the formation of a hetero ternary cluster consisting of volatile organic compounds from industrial or combustion sources, specifically cyclopentene, alongside greenhouse gases like carbon dioxide, and water vapor. While substantial progress has been made in understanding binary complexes, the structural intricacies of hetero ternary clusters remain largely uncharted. Our research characterized the cyclopentene-CO2-H2O hetero ternary cluster utilizing Fourier transform microwave spectroscopy. The observed isomer in the pulsed jet has CO2 and H2O aligning above the cyclopentene ring, with water undergoing an internal rotation approximately about its C2 symmetry axis. Theoretical analyses support these observations, identifying an O-H⋅⋅⋅π hydrogen bond and a secondary C⋅⋅⋅O tetrel bond within this cluster. This study marks a critical step towards comprehending the molecular dynamics and interactions of VOCs, greenhouse gases, and water in the atmosphere, paving the way for further investigations into their roles in climate dynamics and air quality.

Modulating the Amine-CO2 Interaction Strength: Toward Efficient Carbon Capture

This study contributes to a comprehensive understanding of the interactions between CO2 and amines at the molecular level by exploring the rotational spectra of binary complexes between CO2 and eight different amines through pulsed-jet Fourier transform microwave spectroscopy and quantum chemical calculations. The findings reveal a consistent pattern in which CO2 is bonded to the amino group, primarily through a C···N tetrel bond, while being supported by C-H···O/C hydrogen bonds. Notably, the binding energies increase from primary through tertiary amines and with increasing chain length of the alkyl groups. These groups are found to enhance the electron density at the amino group significantly, thereby facilitating the formation of stronger C···N tetrel bonds. The insights provided into how the interaction strength is modulated by the geometries of amines are deemed essential for the design of more effective CO2 adsorption materials, thus advancing carbon capture technologies.

Exploring Uncharted Territory: Spectroscopic Evidence on a Novel Tetrel Bond with -C≡C- Triple Bond

This study presents an investigation of the 2-butynyl alcohol···CO2 adduct, combining pulsed jet Fourier transform microwave spectroscopy with quantum chemical calculations. Two distinct isomers have been observed in the pulsed jet with a relative population ratio of 3/2. It marks the first instance of microwave spectroscopic evidence, to the best of our knowledge, suggesting the existence of a CCO2···π-C≡C- tetrel bond (π-C≡C-···π*CO2 interaction) in both observed isomers. This study highlights the importance of noncovalent interactions involving CO2 in reactant complexes, paving the way for more efficient applications of CO2 by understanding the physical basis of these noncovalent bonds.

From 'halogen' to 'tetrel' bonds: matrix isolation IR spectroscopic and quantum mechanical studies of the effect of central atom substitution in donor tetrahalogens on binary complex formation with formic acid

Binary complex formation between silicon tetrachloride (SiCl4) and formic acid (FA) has been observed in an argon matrix environment. Such complex formation manifests as spectral shifts in signature vibrations of the latter, namely the νCO, νC-O and νO-H vibrations. Quantum chemical calculations reveal that the most stable conformers of the complex involve predominantly the tetrel bond, which has been defined in existing literature as a variant of the "σ-hole" interactions. Here, regions of positive electrostatic potential on the tetrahedral face of SiCl4 act as electrophilic centers (σ-hole) to which the nucleophilic carbonyl group of FA is able to bind. Atoms-in-molecules analysis predicts a bond critical point along the non-covalent contact between the tetrel atom Si and the carbonyl oxygen on FA, corroborating the presence of the tetrel bond. The hyperconjugative interaction parameters at the binding interface obtained from Natural Bond Orbital (NBO) analysis are also consistent with such observations. Although apparently similar to SiCl4, there are noticeable differences in the binding preferences of the lower homologue carbon tetrachloride (CCl4). The binary complexes of the latter with the same FA acceptor molecule have been previously shown to involve halogen bonded, rather than tetrel bonded interactions (Banerjee and Bhattacharya, Spectrochim. Acta Mol. and Biomol. Spectrosc., 2021, 250, 119355). Such variations in the nature of non-covalent interactions of these tetrahalogens are attributed to differences in the distribution of electronic charge density surrounding the central tetrel atom, as obtained from mappings of their electrostatic potential surfaces. Our combined experimental and theoretical findings therefore provide direct evidence of the growing propensity of tetrel atoms to engage in tetrel bonding as we move lower down Group 14, and re-assert the reluctance of the smaller and more electronegative carbon atom to serve as a tetrel bond participant.

Conformational equilibria in acrolein-CO2: the crucial contribution of n → π* interactions unveiled by rotational spectroscopy

Using gas phase Fourier-transform microwave spectroscopy complemented by theoretical analysis, this study delivers a comprehensive depiction of the physical origin of the 'n → π* interaction' between CO2 and acrolein, one of the most reactive aldehydes. Three distinct isomers of the acrolein-CO2 complex, linked through a C⋯O tetrel bond (or n → π* interaction) and a C-H⋯O hydrogen bond, have been unambiguously identified in the pulsed jet. Relative intensity measurements allowed estimation on the population ratio of the three isomers to be T1/T2/C1 ≈ 25/5/1. Advanced theoretical analyses were employed to elucidate the intricacies of the noncovalent interactions within the examined complex. This study not only sheds light on the molecular underpinnings of n → π* interactions but also paves the way for future exploration in carbon dioxide capture and utilization, leveraging the fundamental principles uncovered in the study of acrolein-carbon dioxide interactions.

Insights into the Diels-Alder Reaction of Furan with Maleic Anhydride from Its Prereactive Intermediate

The prereactive intermediate in the furan-maleic anhydride cycloaddition, a classical Diels-Alder reaction, has been captured and characterized in pulsed jets by Fourier transform microwave spectroscopy for the first time. The observed species is stabilized by the π-π* interaction between the two moieties, which connects to the endo channel of the cycloaddition. The secondary interactions between the C=C and C=O in the observed isomer are accountable for its lower energy with respect to the one with the exo channel. The present study tries to fill the significant void of the experimental information on prereactive intermediates as the first stage of Diels-Alder cycloadditions, by outlining the stability of the prereactive intermediate and its accurate molecular structure and by emphasizing the role of the π-π* interaction in governing the stereochemical outcome of the reaction.

Benchmarking the quadrupolar coupling tensor for chlorine to probe weak-bonding interactions

Rotational spectroscopy relies on quantum chemical calculations to interpret observed spectra. Among the most challenging molecules to assign are those with additional angular momenta coupling to the rotation, contributing to the complexity of the spectrum. This benchmark study of computational methods commonly used by rotational spectroscopists targets the nuclear quadrupole coupling constants of chlorine containing molecules and the geometry of its complexes and clusters. For each method, the quality of both structural and electronic parameter predictions is compared with the experimental values. Ab initio methods are found to perform best overall in predicting both the geometry of the complexes and the coupling constants of chlorine with moderate computational cost. This cost can be reduced by combining these methods with density functional theory structure optimization, which still yields adequate predictions. This work constitutes a first step in expanding Bailey's quadrupole coupling data set to encompass molecular clusters. [W. C. Bailey, Calculation of Nuclear Quadrupole Coupling Constants in Gaseous State Molecule, 2019, https://nqcc.wcbailey.net/].

Rotational spectrum of anisole-CO2: Cooperative C···O tetrel bond and CH···O hydrogen bond

Rotational spectrum of the 1:1 anisole-CO₂ complex has been investigated using a pulsed jet Fourier transform microwave spectrometer supplemented with quantum chemical calculations. In the pulsed jet, only one isomer has been observed which is characterized by a dominant C···O tetrel bond and two CH···O_CO2 weak hydrogen bonds. Different theoretical methods predict different orders of relative energies of plausible conformations. The experimental observation is most consistent with the theoretical estimation at the B3LYP-D3(BJ)/6-311++G(d,p) level of theory. Johnson's non-covalent interaction, quantum theory of atoms in molecules and natural bond orbital analyses have been applied to better understand the nature of non-covalent interactions at play in the anisole-CO₂ complex.

Stabilizing Halogen-Bonded Complex between Metallic Anion and Iodide

Halogen bonds (XBs) between metal anions and halides have seldom been reported because metal anions are reactive for XB donors. The pyramidal-shaped Mn(CO)₅^- anion is a candidate metallic XB acceptor with a ligand-protected metal core that maintains the negative charge and an open site to accept XB donors. Herein, Mn(CO)₅^- is prepared by electrospray ionization, and its reaction with CH₃I in gas phase is studied using mass spectrometry and density functional theory (DFT) calculation. The product observed experimentally at m/z = 337 is assigned as [IMn(CO)₄(OCCH₃)]^-, which is formed by successive nucleophilic substitution and reductive elimination, instead of the halogen-bonded complex (XC) CH₃-I···Mn(CO)₅^-, because the I···Mn interaction is weak within XC and it could be a transient species. Inspiringly, DFT calculations predict that replacing CH₃I with CF₃I can strengthen the halogen bonding within the XC due to the electro-withdrawing ability of F. More importantly, in so doing, the nucleophilic substitution barrier can be raised significantly, ~30 kcal/mol, thus leaving the system trapping within the XC region. In brief, the combination of a passivating metal core and the introduction of an electro-withdrawing group to the halide can enable strong halogen bonding between metallic anion and iodide.

Unique Dispersion-Induced Tetrel Bond with Co-operative σ-hole-Induced Pnicogen Bond in the POCl3-Acetone Heterodimer: Experimental Confirmation at Low Temperatures

Both tetrel and pnicogen bonds are known to be induced through σ-/π-holes. This work reports computational and experimental evidence of the carbonyl carbon of acetone hosting a tetrel bond by dispersion rather electrostatic forces, for the first time, while phosphorus of POCl₃ sustains pnicogen bonding via the σ-hole. Heterodimers of POCl₃ with acetone (CH₃COCH₃) have been isolated within inert gas matrixes of Ar and N₂ at 12 K. Characteristic vibrational bands at P═O stretching of POCl₃ and C═O stretching of CH₃COCH₃ have been obtained in support of the computations. The potential energy surface has been traced computationally using ab initio and density functional methods. CH₃COCH₃ harboring such a tetrel bond, in itself, is quite intriguing. The interplay of these interactions has been comprehended by the quantum theory of atoms in molecules, natural bond orbital, energy decomposition, electrostatic potential mapping, and noncovalent interaction analyses.

Sp2- and sp3-C⋯O tetrel bonds in the 3-oxetanone homodimer

The structures and non-covalent interactions at play in the 3-oxetanone homodimer have been investigated using a pulsed jet Fourier transform microwave spectrometer supplemented with quantum chemical calculations. Two isomers were identified in the pulsed jet. With the analyses of non-covalent intermolecular interactions including the quantum theory of atoms, Johnson's non-covalent interactions and natural bond orbital, the observed global minimum is stabilized by a combination of one sp²-C⋯O tetrel bond and a network of multiple C-H⋯O weak hydrogen bonds. The second isomer is characterized by carbonyl-carbonyl interactions, with the formation of one sp²- and one sp³-C⋯O tetrel bond. The conformational population of the two observed isomers in the supersonic expansion was estimated to be N_CE1/N_CC1 ≈ 7/5.

Interaction Types in C6H5(CH2)nOH-CO2 (n = 0-4) Determined by the Length of the Side Alkyl Chain

C₆H₅(CH₂)_nOH-CO₂ complexes have been investigated using rotational spectroscopy (n = 0-2) complemented by quantum chemical calculations (n = 0-4), which implies that the side alkyl chain length can determine the types of intermolecular interactions. Unlike the in-plane C···O tetrel bond in phenol-CO₂, the π*_CO2···π_aromatic interaction has been shown to link CO₂ to phenylmethanol and 2-phenylethanol, which is, to the best of our knowledge, the first time it has been demonstrated by rotational spectroscopy. Further elongations of the side alkyl chain gradually increase the energies of intramolecular hydrogen bonds in 3-phenylpropanol and 4-phenylbutanol so that CO₂ cannot break it. CO₂ will be pushed farther from the monomers and link with the -OH group through a dominating C···O tetrel bond. Our observations would allow, with the choice of the proper length of the side alkyl chain, new strategies for engineering C···π_aromatic-centered noncovalent bonding schemes for the capture, utilization, and storage of CO₂.

Modulation of π character upon complexation captured by molecular rotation spectra

Two configurations of the furan–CF3Cl complex have been observed by high-resolution rotational spectroscopy. One is characterized by a dominant Cl lone pairs∙∙∙π*aromatic interaction and the other is stabilized by a...

S66x8 noncovalent interactions revisited: new benchmark and performance of composite localized coupled-cluster methods

The S66x8 noncovalent interactions benchmark has been re-evaluated at the “sterling silver” level. Against this, a selection of computationally more economical alternatives has been assayed, ranging from localized CC to double hybrids and SAPT(DFT).

Maximal occupation by bases of π-hole bands surrounding linear molecules

Linear molecules such as CO₂ contain a positive π-hole ring that surrounds C on the molecule's equator. Quantum calculations examine the question as to how many bases can simultaneously bind to this ring. Linear molecules examined are TO₂ , where T = C, Si, Ge, Sn; bases are NCH and NH₃ . CO₂ engages in the weakest of the tetrel bonds, and can bind up to three NCH and two NH₃ . Unlike σ-hole tetrel bonds, Si forms the strongest tetrel bonds, with interaction energies as high as 43 kcal/mol with NH₃ . But like GeO₂ , SiO₂ can sustain only two bases in its equatorial ring. The π-hole ring of SnO₂ can engage in up to four tetrel bonds with either NCH or NH₃ , even though these bonds are weaker than those with GeO₂ or SiO₂ . As all of these complexes cast TO₂ in the role of multiple electron acceptor, the resulting negative cooperativity makes each successive bond weaker than its predecessor as bases are added, as well as reducing the magnitude of the central molecule's π-hole.

Competitive tetrel bond and hydrogen bond in benzaldehyde-CO2: characterization via rotational spectroscopy

The rotational spectrum of the 1 : 1 benzaldehyde-CO₂ complex has been investigated using pulsed-jet Fourier transform microwave spectroscopy complemented with quantum chemical calculations. Two isomers, both characterized by one C⋯O tetrel bond (n → π* interaction) and one C-H⋯O hydrogen bond (n → σ* interaction), have been observed in the pulsed jet. Competition between the tetrel bond and the hydrogen bond has been disclosed by natural bond orbital analysis: isomer I is characterized by one dominating OC_CO2⋯O tetrel bond (12.6 kJ mol^-1) and a secondary (C-H)_formyl⋯O hydrogen bond (2.2 kJ mol^-1); by contrast, in isomer II the (C-H)_phenyl⋯O hydrogen bond (7.6 kJ mol^-1) becomes the dominant bond, while the OC_CO2⋯O tetrel bond (5.8 kJ mol^-1) becomes much weaker with respect to that of isomer I. Using intensity measurements the relative population ratio of the two isomers was estimated to be N_I/N_II ≈ 2/1.

Anatomy of π-hole bonds: Linear systems

The list of σ-hole bonds is long and growing, encompassing both H-bonds and its closely related halogen, chalcogen, etc., sisters. These bonds rely on the asymmetric distribution of electron density, whose depletion along the extension of a covalent bond leaves a positive region of electrostatic potential from which these bonds derive their name. However, the density distributions of other molecules contain analogous positive regions that lie out of the molecular plane known as π-holes, which are likewise capable of engaging in noncovalent bonds. Quantum calculations are applied to study such π-hole bonds that involve linear molecules, whose positive region is a circular belt surrounding the molecule, rather than the more restricted area of a σ-hole. These bonds are examined in terms of their most fundamental elements arising from the spatial dispositions of their relevant molecular orbitals and the π-holes in both the total electron density and the electrostatic potential to which they lead. Systems examined comprise tetrel, chalcogen, aerogen, and triel bonds, as well as those involving group II elements, with atoms drawn from various rows of the Periodic Table. The π-hole bonds established by linear molecules tend to be weaker than those of comparable planar systems.

Characterizing hydrogen and tetrel bonds in clusters of CO2 with carboxylic acids

The interaction between carbon dioxide and planar carboxylic acids has been investigated through the analysis of the microwave spectrum of the acrylic acid·CO2 complex and quantum chemical modeling of the R-COOH·(CO2)1,16 clusters, where R = H, CH2CH. As regards the 1 : 1 compounds, two species, involving the s-cis and s-trans conformers of acrylic acid were observed. For both of them, a similar bidentate interaction arises between the carbonyl group of CO2 and the carboxylic group of the organic acid, leading to the formation of a planar six-membered ring. The binding energy is estimated to be De ≃ 21 kJ mol-1, 1/3 being the energy contributions of the tetrel to hydrogen bonds, respectively. In the 1 : 16 clusters, the ring arrangement is broken, allowing for the interaction of the acid with several CO2 molecules. The CO2 molecules completely surround formic acid, whereas, in the case of acrylic acid, they tend to avoid the allyl chain.