1
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Ng WP, Zhang Z, Yang J. Accurate Neural Network Fine-Tuning Approach for Transferable Ab Initio Energy Prediction across Varying Molecular and Crystalline Scales. J Chem Theory Comput 2025; 21:1602-1614. [PMID: 39902570 DOI: 10.1021/acs.jctc.4c01261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2025]
Abstract
Existing machine learning models attempt to predict the energies of large molecules by training small molecules, but eventually fail to retain high accuracy as the errors increase with system size. Through an orbital pairwise decomposition of the correlation energy, a pretrained neural network model on hundred-scale data containing small molecules is demonstrated to be sufficiently transferable for accurately predicting large systems, including molecules and crystals. Our model introduces a residual connection to explicitly learn the pairwise energy corrections, and employs various low-rank retraining techniques to modestly adjust the learned network parameters. We demonstrate that with as few as only one larger molecule retraining the base model originally trained on only small molecules of (H2O)6, the MP2 correlation energy of the large liquid water (H2O)64 in a periodic supercell can be predicted at chemical accuracy. Similar performance is observed for large protonated clusters and periodic poly glycine chains. A demonstrative application is presented to predict the energy ordering of symmetrically inequivalent sublattices for distinct hydrogen orientations in the ice XV phase. Our work represents an important step forward in the quest for cost-effective, highly accurate and transferable neural network models in quantum chemistry, bridging the electronic structure patterns between small and large systems.
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Affiliation(s)
- Wai-Pan Ng
- Department of Chemistry, The University of Hong Kong, Hong Kong 999077, P. R. China
| | - Zili Zhang
- Department of Chemistry, The University of Hong Kong, Hong Kong 999077, P. R. China
| | - Jun Yang
- Department of Chemistry, The University of Hong Kong, Hong Kong 999077, P. R. China
- Hong Kong Quantum AI Lab Limited, Hong Kong 999077, P. R. China
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2
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Yin Y, Pan J, Wang F, Li P, Cai Z, Xu X. Research on multi-source microstructure image recognition of foam ceramics using convolutional network combine with frequency domain. Sci Rep 2025; 15:3032. [PMID: 39856191 PMCID: PMC11759684 DOI: 10.1038/s41598-025-87305-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Accepted: 01/17/2025] [Indexed: 01/27/2025] Open
Abstract
Foam ceramics are widely used in industrial applications due to their unique properties, including high porosity, lightweight, and high-temperature resistance. However, their complex microstructure presents significant challenges for image analysis. Traditional machine learning methods often fall short in capturing both global feature dependencies and detailed representations. To address this, a novel artificial intelligence recognition model, FD-Conv, is proposed, which combines the global information processing capabilities of Transformers with the local feature extraction strengths of convolutional neural networks. Additionally, a frequency domain block detail enhancement mechanism is introduced to improve recognition accuracy. Experimental results demonstrate that the FD-Conv model enhances recognition accuracy by at least 7.6% compared to state-of-the-art methods. Furthermore, the model effectively identifies foam ceramics with varying compositions and formulations and quantifies their microstructural phase characteristics. This research aims to advance the application of foam ceramic microstructure image analysis by improving recognition accuracy, particularly in multi-source microscopic image feature learning and pattern recognition.
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Affiliation(s)
- Yi Yin
- School of Computer Science and Technology, Wuhan University of Science and Technology, Wuhan, 430081, P.R. China
- The State Key Laboratory of Refractories and Metallurgy, Wuhan University of Science and Technology, Wuhan, 430081, P.R. China
| | - Jianwei Pan
- School of Computer Science and Technology, Wuhan University of Science and Technology, Wuhan, 430081, P.R. China
| | - Fang Wang
- Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, 430081, P.R. China
| | - Peihang Li
- Computer Science, Durham University, Durham, DH1 3LE, UK
| | - Zhen Cai
- The State Key Laboratory of Refractories and Metallurgy, Wuhan University of Science and Technology, Wuhan, 430081, P.R. China
| | - Xin Xu
- School of Computer Science and Technology, Wuhan University of Science and Technology, Wuhan, 430081, P.R. China.
- Joint International Research Laboratory of Refractories and Metallurgy, Ministry of Education, Wuhan, 430081, P.R. China.
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3
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Xue P, Qiu R, Peng C, Peng Z, Ding K, Long R, Ma L, Zheng Q. Solutions for Lithium Battery Materials Data Issues in Machine Learning: Overview and Future Outlook. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2410065. [PMID: 39556707 DOI: 10.1002/advs.202410065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2024] [Revised: 11/02/2024] [Indexed: 11/20/2024]
Abstract
The application of machine learning (ML) techniques in the lithium battery field is relatively new and holds great potential for discovering new materials, optimizing electrochemical processes, and predicting battery life. However, the accuracy of ML predictions is strongly dependent on the underlying data, while the data of lithium battery materials faces many challenges, such as the multi-sources, heterogeneity, high-dimensionality, and small-sample size. Through the systematic review of the existing literatures, several effective strategies are proposed for data processing as follows: classification and extraction, screening and exploration, dimensionality reduction and generation, modeling and evaluation, and incorporation of domain knowledge, with the aim to enhance the data quality, model reliability, and interpretability. Furthermore, other possible strategies for addressing data quality such as database management techniques and data analysis methodologies are also emphasized. At last, an outlook of ML development for data processing methods is presented. These methodologies are not only applicable to the data of lithium battery materials, but also endow important reference significance to electrocatalysis, electrochemical corrosion, high-entropy alloys, and other fields with similar data challenges.
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Affiliation(s)
- Pengcheng Xue
- School of Chemistry, Guangzhou Key Laboratory of Materials for Energy Conversion and Storage, South China Normal University, Guangzhou, 510006, China
| | - Rui Qiu
- School of Chemistry, Guangzhou Key Laboratory of Materials for Energy Conversion and Storage, South China Normal University, Guangzhou, 510006, China
| | - Chuchuan Peng
- School of Energy and Power Engineering, Huazhong University of Science and Technology, Wuhan, 430074, P. R. China
| | - Zehang Peng
- School of Chemistry, Guangzhou Key Laboratory of Materials for Energy Conversion and Storage, South China Normal University, Guangzhou, 510006, China
| | - Kui Ding
- School of Chemistry, Guangzhou Key Laboratory of Materials for Energy Conversion and Storage, South China Normal University, Guangzhou, 510006, China
| | - Rui Long
- School of Energy and Power Engineering, Huazhong University of Science and Technology, Wuhan, 430074, P. R. China
| | - Liang Ma
- School of Chemistry, Guangzhou Key Laboratory of Materials for Energy Conversion and Storage, South China Normal University, Guangzhou, 510006, China
| | - Qifeng Zheng
- School of Chemistry, Guangzhou Key Laboratory of Materials for Energy Conversion and Storage, South China Normal University, Guangzhou, 510006, China
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Allegretto JA, Onna D, Bilmes SA, Azzaroni O, Rafti M. Unified Roadmap for ZIF-8 Nucleation and Growth: Machine Learning Analysis of Synthetic Variables and Their Impact on Particle Size and Morphology. CHEMISTRY OF MATERIALS : A PUBLICATION OF THE AMERICAN CHEMICAL SOCIETY 2024; 36:5814-5825. [PMID: 38883435 PMCID: PMC11171283 DOI: 10.1021/acs.chemmater.4c01069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 05/04/2024] [Accepted: 05/06/2024] [Indexed: 06/18/2024]
Abstract
Metal-organic frameworks (MOFs) have settled in the scientific community over the last decades as versatile materials with several applications. Among those, zeolitic imidazolate framework 8 (ZIF-8) is a well-known MOF that has been applied in various and diverse fields, from drug-delivery platforms to microelectronics. However, the complex role played by the reaction parameters in controlling the size and morphology of ZIF-8 particles is still not fully understood. Even further, many individual reports propose different nucleation and growth mechanisms for ZIF-8, thus creating a fragmented view for the behavior of the system. To provide a unified view, we have generated a comprehensive data set of synthetic conditions and their final outputs and applied machine learning techniques to analyze the data. Our approach has enabled us to identify the nucleation and growth mechanisms operating for ZIF-8 in a given sub-space of synthetic variables space (chemical space) and to reveal their impact on important features such as final particle size and morphology. By doing so, we draw connections and establish a hierarchy for the role of each synthetic variable and provide with rule of thumb for attaining control on the final particle size. Our results provide a unified roadmap for the nucleation and growth mechanisms of ZIF-8 in agreement with mainstream reported trends, which can guide the rational design of ZIF-8 particles which ultimately determine their suitability for any given targeted application. Altogether, our work represents a step forward in seeking control of the properties of MOFs through a deeper understanding of the rationale behind the synthesis procedures employed for their synthesis.
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Affiliation(s)
- Juan A Allegretto
- Laboratory for Life Sciences and Technology (LiST) Faculty of Medicine and Dentistry, Danube Private University, 3500 Krems, Austria
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, CONICET, CC 16 Suc. 4, La Plata B1904DPI, Argentina
| | - Diego Onna
- Instituto de Química Física de los Materiales Medio Ambiente y Energía (INQUIMAE), CONICET-Universidad de Buenos Aires, Buenos Aires C1053ABH, Argentina
- Departamento de Química Inorgánica Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires C1053ABH, Argentina
| | - Sara A Bilmes
- Instituto de Química Física de los Materiales Medio Ambiente y Energía (INQUIMAE), CONICET-Universidad de Buenos Aires, Buenos Aires C1053ABH, Argentina
- Departamento de Química Inorgánica Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires C1053ABH, Argentina
| | - Omar Azzaroni
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, CONICET, CC 16 Suc. 4, La Plata B1904DPI, Argentina
| | - Matías Rafti
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, CONICET, CC 16 Suc. 4, La Plata B1904DPI, Argentina
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Zhang Y, Chen F, Liu Z, Ju Y, Cui D, Zhu J, Jiang X, Guo X, He J, Zhang L, Zhang X, Su Y. A materials terminology knowledge graph automatically constructed from text corpus. Sci Data 2024; 11:600. [PMID: 38849436 PMCID: PMC11161478 DOI: 10.1038/s41597-024-03448-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 05/31/2024] [Indexed: 06/09/2024] Open
Abstract
A scalable, reusable, and broad-coverage unified material knowledge representation shows its importance and will bring great benefits to data sharing among materials communities. A knowledge graph (KG) for materials terminology, which is a formal collection of term entities and relationships, is conceptually important to achieve this goal. In this work, we propose a KG for materials terminology, named Materials Genome Engineering Database Knowledge Graph (MGED-KG), which is automatically constructed from text corpus via natural language processing. MGED-KG is the most comprehensive KG for materials terminology in both Chinese and English languages, consisting of 8,660 terms and their explanations. It encompasses 11 principal categories, such as Metals, Composites, Nanomaterials, each with two or three levels of subcategories, resulting in a total of 235 distinct category labels. For further application, a knowledge web system based on MGED-KG is developed and shows its great power in improving data sharing efficiency from the aspects of query expansion, term, and data recommendation.
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Affiliation(s)
- Yuwei Zhang
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Fangyi Chen
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Zeyi Liu
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Yunzhuo Ju
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Dongliang Cui
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Jinyi Zhu
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Xue Jiang
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute for Advanced Materials and Technology, University of Science and Technology Beijing, Beijing, 100083, China.
- Liaoning Academy of Materials, Shenyang, 110000, Liaoning, China.
- Shunde Innovation School, University of Science and Technology Beijing, Guangdong, 528399, China.
| | - Xi Guo
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, 100083, China.
- Beijing Key Laboratory of Knowledge Engineering for Materials, Beijing, 100083, China.
| | - Jie He
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, 100083, China.
- Liaoning Academy of Materials, Shenyang, 110000, Liaoning, China.
| | - Lei Zhang
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute for Advanced Materials and Technology, University of Science and Technology Beijing, Beijing, 100083, China
| | - Xiaotong Zhang
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Yanjing Su
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute for Advanced Materials and Technology, University of Science and Technology Beijing, Beijing, 100083, China
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Wang G, Wang C, Zhang X, Li Z, Zhou J, Sun Z. Machine learning interatomic potential: Bridge the gap between small-scale models and realistic device-scale simulations. iScience 2024; 27:109673. [PMID: 38646181 PMCID: PMC11033164 DOI: 10.1016/j.isci.2024.109673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/23/2024] Open
Abstract
Machine learning interatomic potential (MLIP) overcomes the challenges of high computational costs in density-functional theory and the relatively low accuracy in classical large-scale molecular dynamics, facilitating more efficient and precise simulations in materials research and design. In this review, the current state of the four essential stages of MLIP is discussed, including data generation methods, material structure descriptors, six unique machine learning algorithms, and available software. Furthermore, the applications of MLIP in various fields are investigated, notably in phase-change memory materials, structure searching, material properties predicting, and the pre-trained universal models. Eventually, the future perspectives, consisting of standard datasets, transferability, generalization, and trade-off between accuracy and complexity in MLIPs, are reported.
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Affiliation(s)
- Guanjie Wang
- School of Materials Science and Engineering, Beihang University, Beijing 100191, China
- School of Integrated Circuit Science and Engineering, Beihang University, Beijing 100191, China
| | - Changrui Wang
- School of Materials Science and Engineering, Beihang University, Beijing 100191, China
| | - Xuanguang Zhang
- School of Materials Science and Engineering, Beihang University, Beijing 100191, China
| | - Zefeng Li
- School of Materials Science and Engineering, Beihang University, Beijing 100191, China
| | - Jian Zhou
- School of Materials Science and Engineering, Beihang University, Beijing 100191, China
| | - Zhimei Sun
- School of Materials Science and Engineering, Beihang University, Beijing 100191, China
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7
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Miao R, Bissoli M, Basagni A, Marotta E, Corni S, Amendola V. Data-Driven Predetermination of Cu Oxidation State in Copper Nanoparticles: Application to the Synthesis by Laser Ablation in Liquid. J Am Chem Soc 2023; 145:25737-25752. [PMID: 37907392 PMCID: PMC10690790 DOI: 10.1021/jacs.3c09158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 10/12/2023] [Accepted: 10/18/2023] [Indexed: 11/02/2023]
Abstract
Copper-based nanocrystals are reference nanomaterials for integration into emerging green technologies, with laser ablation in liquid (LAL) being a remarkable technique for their synthesis. However, the achievement of a specific type of nanocrystal, among the whole library of nanomaterials available using LAL, has been until now an empirical endeavor based on changing synthesis parameters and characterizing the products. Here, we started from the bibliographic analysis of LAL synthesis of Cu-based nanocrystals to identify the relevant physical and chemical features for the predetermination of copper oxidation state. First, single features and their combinations were screened by linear regression analysis, also using a genetic algorithm, to find the best correlation with experimental output and identify the equation giving the best prediction of the LAL results. Then, machine learning (ML) models were exploited to unravel cross-correlations between features that are hidden in the linear regression analysis. Although the LAL-generated Cu nanocrystals may be present in a range of oxidation states, from metallic copper to cuprous oxide (Cu2O) and cupric oxide (CuO), in addition to the formation of other materials such as Cu2S and CuCN, ML was able to guide the experiments toward the maximization of the compounds in the greatest demand for integration in sustainable processes. This approach is of general applicability to other nanomaterials and can help understand the origin of the chemical pathways of nanocrystals generated by LAL, providing a rational guideline for the conscious predetermination of laser-synthesis parameters toward the desired compounds.
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Affiliation(s)
- Runpeng Miao
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy
| | - Michael Bissoli
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy
| | - Andrea Basagni
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy
| | - Ester Marotta
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy
| | - Stefano Corni
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy
| | - Vincenzo Amendola
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy
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Zhu X, Yang Y, Shu X, Xu T, Jing Y. Computational insights into the rational design of organic electrode materials for metal ion batteries. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2023. [DOI: 10.1002/wcms.1660] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
Affiliation(s)
- Xinyue Zhu
- Jiangsu Co‐Innovation Centre of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering Nanjing Forestry University Nanjing China
| | - Youchao Yang
- Jiangsu Co‐Innovation Centre of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering Nanjing Forestry University Nanjing China
| | - Xipeng Shu
- Jiangsu Co‐Innovation Centre of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering Nanjing Forestry University Nanjing China
| | - Tianze Xu
- Jiangsu Co‐Innovation Centre of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering Nanjing Forestry University Nanjing China
| | - Yu Jing
- Jiangsu Co‐Innovation Centre of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering Nanjing Forestry University Nanjing China
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