1
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Blasius J, Drysch K, Pilz FH, Frömbgen T, Kielb P, Kirchner B. Efficient Prediction of Mole Fraction Related Vibrational Frequency Shifts. J Phys Chem Lett 2023; 14:10531-10536. [PMID: 37972218 DOI: 10.1021/acs.jpclett.3c02761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2023]
Abstract
While so far it has been possible to calculate vibrational spectra of mixtures at a particular composition, we present here a novel cluster approach for a fast and robust calculation of mole fraction dependent infrared and vibrational circular dichroism spectra at the example of acetonitrile/(R)-butan-2-ol mixtures. By assigning weights to a limited number of quantum chemically calculated clusters, vibrational spectra can be obtained at any desired composition by a weighted average of the single cluster spectra. In this way, peak positions carrying information about intermolecular interactions can be predicted. We show that mole fraction dependent peak shifts can be accurately modeled and, that experimentally recorded infrared spectra can be reproduced with high accuracy over the entire mixing range. Because only a very limited number of clusters is required, the presented approach is a valuable and computationally efficient tool to access mole fraction dependent spectra of mixtures on a routine basis.
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Affiliation(s)
- Jan Blasius
- Mulliken Center for Theoretical Chemistry, Clausius Institute of Physical and Theoretical Chemistry, University of Bonn, Beringstraße 4-6, D-53115 Bonn, Germany
| | - Katrin Drysch
- Mulliken Center for Theoretical Chemistry, Clausius Institute of Physical and Theoretical Chemistry, University of Bonn, Beringstraße 4-6, D-53115 Bonn, Germany
| | - Frank Hendrik Pilz
- Clausius Institute of Physical and Theoretical Chemistry, University of Bonn, Wegelerstraße 12, D-53115 Bonn, Germany
| | - Tom Frömbgen
- Mulliken Center for Theoretical Chemistry, Clausius Institute of Physical and Theoretical Chemistry, University of Bonn, Beringstraße 4-6, D-53115 Bonn, Germany
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Patrycja Kielb
- Clausius Institute of Physical and Theoretical Chemistry, University of Bonn, Wegelerstraße 12, D-53115 Bonn, Germany
- Transdisciplinary Research Area "Building Blocks of Matter and Fundamental Interactions" (TRA Matter), University of Bonn, D-53115 Bonn, Germany
| | - Barbara Kirchner
- Mulliken Center for Theoretical Chemistry, Clausius Institute of Physical and Theoretical Chemistry, University of Bonn, Beringstraße 4-6, D-53115 Bonn, Germany
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2
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Taniguchi T, Agbo DO. Vibrational circular dichroism spectroscopy in the C-D, XY, and XYZ stretching region. Phys Chem Chem Phys 2023; 25:28567-28575. [PMID: 37861094 DOI: 10.1039/d3cp04287a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2023]
Abstract
Vibrational circular dichroism (VCD) spectroscopy is a powerful technique for structural analysis of chiral molecules, but information available from VCD spectra of large molecular systems can be limited by severe overlap of vibrational bands. While common chiral molecules do not absorb in the 1900-2400 cm-1 region, observation of VCD signals in this spectrally-isolated region is possible for molecules containing C-D, XY, and XYZ chromophores. Thus, a strategic introduction of these chromophores to a target molecule may produce VCD signals informative for molecular structures. VCD spectroscopy in the 1900-2400 cm-1 region is a rather unexplored research field and its basic properties remain to be investigated. This perspective article discusses insight obtained so far on the usefulness and physicochemical aspects of VCD spectroscopy in this region with briefly summarizing previous experimental VCD studies including classic examples as well as our recent results. We show that anharmonic effects such as overtones and combination bands often complicate VCD patterns. On the other hand, some molecules exhibit characteristic VCD signals that can be well interpreted by harmonic DFT spectral calculations for structural analysis. This article also discusses several examples of the use of this region for studying solute-solvent interactions and for VCD signal augmentation.
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Affiliation(s)
- Tohru Taniguchi
- Frontier Research Center for Advanced Material and Life Science, Faculty of Advanced Life Science, Hokkaido University, North 21 West 11, Sapporo 001-0021, Japan.
| | - Davidson Obinna Agbo
- Graduate School of Life Science, Hokkaido University, North 21 West 11, Sapporo 001-0021, Japan
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3
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Rey-Tarrío F, Rodríguez R, Quiñoá E, Freire F. Screw sense excess and reversals of helical polymers in solution. Nat Commun 2023; 14:1742. [PMID: 36990975 DOI: 10.1038/s41467-023-37405-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 03/16/2023] [Indexed: 03/30/2023] Open
Abstract
AbstractThe helix reversal is a structural motif found in helical polymers in the solid state, but whose existence is elusive in solution. Herein, we have shown how the photochemical electrocyclization (PEC) of poly(phenylacetylene)s (PPAs) can be used to determine not only the presence of helix reversals in polymer solution, but also to estimate the screw sense excess. To perform these studies, we used a library of well folded PPAs and different copolymers series made by enantiomeric comonomers that show chiral conflict effect. The results obtained indicate that the PEC of a PPA will depend on the helical scaffold adopted by the PPA backbone and on its folding degree. Then, from these studies it is possible to determine the screw sense excess of a PPA, highly important in applications such as chiral stationary phases in HPLC or asymmetric synthesis.
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4
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Visualized thermoresponsive helix-helix switch of polyphenylacetylene with a wide-range tunable transition temperature. Sci China Chem 2023. [DOI: 10.1007/s11426-022-1422-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
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5
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Rodríguez R, Rivadulla‐Cendal E, Fernández‐Míguez M, Fernández B, Maeda K, Quiñoá E, Freire F. Full Control of the Chiral Overpass Effect in Helical Polymers: P/M Screw Sense Induction by Remote Chiral Centers After Bypassing the First Chiral Residue. Angew Chem Int Ed Engl 2022; 61:e202209953. [PMID: 36121741 PMCID: PMC9828504 DOI: 10.1002/anie.202209953] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Indexed: 01/12/2023]
Abstract
In helical polymers, helical sense induction is usually commanded by teleinduction mechanism, where the largest substituent of the chiral residue directly attached to the main chain is the one that commands the helical sense. In this work, different helical structures with different helical senses are induced in a helical polymer [poly-(phenylacetylene)] when the conformational composition of two different dihedral angles of a pendant group with more than two chiral residues is tamed. Thus, while the dihedral angle at chiral residue 1 [(R)- or (S)-alanine], attached to the backbone, produces an extended or bent conformation in the pendant resulting in two scaffolds with different stretching degree, the second dihedral angle at chiral residue 2 [(R)- or (S)-methoxyphenylacetamide] places the substituents of this chiral center in a different spatial orientation, originating opposite helical senses at the polymer that are induced through a total control of the "chiral overpass effect".
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Affiliation(s)
- Rafael Rodríguez
- Centro Singular de investigación en Química Biolóxica e Materiais Moleculares (CiQUS) e Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
- WPI Nano Life Science Institute (WPI-NanoLSI)Kanazawa UniversityKakuma-machiKanazawa920-1192Japan
| | - Elena Rivadulla‐Cendal
- Centro Singular de investigación en Química Biolóxica e Materiais Moleculares (CiQUS) e Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
| | - Manuel Fernández‐Míguez
- Centro Singular de investigación en Química Biolóxica e Materiais Moleculares (CiQUS) e Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
| | - Berta Fernández
- Departamento de Química FísicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
| | - Katsuhiro Maeda
- WPI Nano Life Science Institute (WPI-NanoLSI)Kanazawa UniversityKakuma-machiKanazawa920-1192Japan
- Graduate School of Natural Science and TechnologyKanazawa UniversityKakuma-machiKanazawa920-1192Japan
| | - Emilio Quiñoá
- Centro Singular de investigación en Química Biolóxica e Materiais Moleculares (CiQUS) e Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
| | - Félix Freire
- Centro Singular de investigación en Química Biolóxica e Materiais Moleculares (CiQUS) e Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782Santiago de CompostelaSpain
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6
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Tarrío JJ, Rodríguez R, Fernández B, Quiñoá E, Freire F. Dissymmetric Chiral Poly(diphenylacetylene)s: Secondary Structure Elucidation and Dynamic Luminescence. Angew Chem Int Ed Engl 2022; 61:e202115070. [DOI: 10.1002/anie.202115070] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2021] [Indexed: 12/17/2022]
Affiliation(s)
- Juan José Tarrío
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Rafael Rodríguez
- WPI Nano Life Science Institute (WPI-NanoLSI) Kanazawa University Kakuma-machi Kanazawa 920-1192 Japan
| | - Berta Fernández
- Departamento de Química Física Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Emilio Quiñoá
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Félix Freire
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
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7
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Freire F, Tarrío JJ, Rodríguez R, Fernández B, Quiñoá E. Dissymmetric Chiral Poly(diphenylacetylene)s: Secondary Structure Elucidation and Dynamic Luminescence. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202115070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Felix Freire
- Universidade de Santiago de Compostela Centre for Research in Biological Chemistry and Molecular Materials Jenaro de la Fuente street s/n 15782 Santiago de Compostela SPAIN
| | - Juan José Tarrío
- Universidade de Santiago de Compostela - Campus de Santiago: Universidade de Santiago de Compostela CiQUS SPAIN
| | - Rafael Rodríguez
- Kanazawa University - Kakuma Campus: Kanazawa Daigaku Organic Chemsitry JAPAN
| | - Berta Fernández
- Universidade de Santiago de Compostela - Campus de Santiago: Universidade de Santiago de Compostela Physical Chemistry RWANDA
| | - Emilio Quiñoá
- Universidade de Santiago de Compostela - Campus de Santiago: Universidade de Santiago de Compostela CiQUS SPAIN
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8
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Berdagué P, Gouilleux B, Noll M, Immel S, Reggelin M, Lesot P. Study and quantification of enantiodiscrimination power of four polymeric chiral LLCs using NAD 2D-NMR. Phys Chem Chem Phys 2022; 24:7338-7348. [DOI: 10.1039/d1cp04915a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Identifying and understanding the role of key molecular factors involved in the orientation/discrimination phenomena of analytes in polymer-based chiral liquid crystals (CLCs) are essential tasks for optimizing computational predictions (molecular...
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9
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Ichikawa M, Goto H. Synthesis of a polyacetylene derivative bearing aspirin with chiral charge carrier “chiralions”. JOURNAL OF MACROMOLECULAR SCIENCE PART A-PURE AND APPLIED CHEMISTRY 2021. [DOI: 10.1080/10601325.2021.1981765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Mai Ichikawa
- Department of Materials Science, Faculty of Pure and Applied Sciences, University of Tsukuba, Tsukuba, Japan
| | - Hiromasa Goto
- Department of Materials Science, Faculty of Pure and Applied Sciences, University of Tsukuba, Tsukuba, Japan
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10
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Wang S, Hu D, Guan X, Cai S, Shi G, Shuai Z, Zhang J, Peng Q, Wan X. Brightening up Circularly Polarized Luminescence of Monosubstituted Polyacetylene by Conformation Control: Mechanism, Switching, and Sensing. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202108010] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Sheng Wang
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Polymer Chemistry and Physics of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 China
| | - Deping Hu
- Key Laboratory of Organic OptoElectronics and Molecular, Engineering of Ministry of Education Department of Chemistry Tsinghua University Beijing 100084 China
| | - Xiaoyan Guan
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Polymer Chemistry and Physics of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 China
| | - Siliang Cai
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Polymer Chemistry and Physics of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 China
| | - Ge Shi
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Polymer Chemistry and Physics of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 China
| | - Zhigang Shuai
- Key Laboratory of Organic OptoElectronics and Molecular, Engineering of Ministry of Education Department of Chemistry Tsinghua University Beijing 100084 China
| | - Jie Zhang
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Polymer Chemistry and Physics of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 China
| | - Qian Peng
- School of Chemical Sciences University of Chinese Academy of Sciences Beijing 100049 China
| | - Xinhua Wan
- Beijing National Laboratory for Molecular Sciences Key Laboratory of Polymer Chemistry and Physics of Ministry of Education College of Chemistry and Molecular Engineering Peking University Beijing 100871 China
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11
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Wang S, Hu D, Guan X, Cai S, Shi G, Shuai Z, Zhang J, Peng Q, Wan X. Brightening up Circularly Polarized Luminescence of Monosubstituted Polyacetylene by Conformation Control: Mechanism, Switching, and Sensing. Angew Chem Int Ed Engl 2021; 60:21918-21926. [PMID: 34309164 DOI: 10.1002/anie.202108010] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 07/15/2021] [Indexed: 11/09/2022]
Abstract
The first example of luminescent monosubstituted polyacetylenes (mono-PAs) is presented, based on a contracted cis-cisoid polyene backbone. It has an excellent circularly polarized luminescence (CPL) performance with a high dissymmetric factor (up to the order of 10-1 ). The luminescence stems from the helical cis-cisoid PA backbone, which is tightly fixed by the strong intramolecular hydrogen bonds, thereby reversing the energy order of excited states and enabling an emissive energy dissipation. CPL switches are facilely achieved by the solvent and temperature through reversible conformational transition. By taking advantages of fast response and high sensitivity, the thin film of mono-PAs could be used as a CPL-based probe for quantitative detection of trifluoroacetic acid with a wider linear dynamic range than those of photoluminescence and circular dichroism. This work opens a new avenue to develop novel smart CPL materials through modulating conformational transition.
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Affiliation(s)
- Sheng Wang
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China
| | - Deping Hu
- Key Laboratory of Organic OptoElectronics and Molecular, Engineering of Ministry of Education, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Xiaoyan Guan
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China
| | - Siliang Cai
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China
| | - Ge Shi
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China
| | - Zhigang Shuai
- Key Laboratory of Organic OptoElectronics and Molecular, Engineering of Ministry of Education, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Jie Zhang
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China
| | - Qian Peng
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xinhua Wan
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China
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12
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Krupp A, Noll M, Reggelin M. Valine derived poly (acetylenes) as versatile chiral lyotropic liquid crystalline alignment media for RDC-based structure elucidations. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2021; 59:577-586. [PMID: 32012341 DOI: 10.1002/mrc.5003] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Revised: 01/22/2020] [Accepted: 01/27/2020] [Indexed: 06/10/2023]
Abstract
Anisotropic samples of lyotropic liquid crystalline (LLC) phases of valine derived polyaryl acetylenes were employed as chiral alignment media for the measurement of residual dipolar couplings (RDCs) of 12 small, chiral, organic molecules. The quadrupolar splitting of the deuterium signal of CDCl3 can be adjusted by temperature and concentration changes from 0 to 350 Hz. The LLC phases showed excellent orienting properties for all analytes bearing various functional groups. The precise extraction of RDCs in the range of up to ±30 Hz from F2-coupled HSQC spectra was possible. Additionally, the chiral environment led to diastereomorphous interactions with the enantiomers of chiral analytes leading to two different sets of RDCs. This differential order effect was particularly pronounced with H-bond donors like alcohols and 2° amines.
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Affiliation(s)
- Alexis Krupp
- Clemens Schöpf Institut for Organic Chemistry and Biochemistry, Technical University of Darmstadt, Darmstadt, Germany
- Nitrochemie Aschau GmbH, Aschau am Inn, Germany
| | - Markus Noll
- Clemens Schöpf Institut for Organic Chemistry and Biochemistry, Technical University of Darmstadt, Darmstadt, Germany
| | - Michael Reggelin
- Clemens Schöpf Institut for Organic Chemistry and Biochemistry, Technical University of Darmstadt, Darmstadt, Germany
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13
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Rey‐Tarrío F, Rodríguez R, Quiñoá E, Riguera R, Freire F. Photochemical Electrocyclization of Poly(phenylacetylene)s: Unwinding Helices to Elucidate their 3D Structure in Solution. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202014780] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Francisco Rey‐Tarrío
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Rafael Rodríguez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Emilio Quiñoá
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Ricardo Riguera
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Félix Freire
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
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14
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Rey-Tarrío F, Rodríguez R, Quiñoá E, Riguera R, Freire F. Photochemical Electrocyclization of Poly(phenylacetylene)s: Unwinding Helices to Elucidate their 3D Structure in Solution. Angew Chem Int Ed Engl 2021; 60:8095-8103. [PMID: 33332770 DOI: 10.1002/anie.202014780] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 12/03/2020] [Indexed: 12/16/2022]
Abstract
Photochemical electrocyclization of poly(phenylacetylene)s (PPAs) is used for the structural elucidation of a polyene backbone. This method not only allows classification of PPAs in cis-cisoidal (ω1 <90°) or cis-transoidal structures (ω1 >90°), but also approximating ω1 . A PPA solution is illuminated with visible light and monitoring the photochemical electrocyclization of the PPA helix by measuring the ECD spectra at different times. PPAs with a cis-cisoidal structure show a reduction of the ECD signal of at least 50 % before 30 min of irradiation, while cis-transoidal helices need much longer time because the transoidal bond must be isomerized. The different cis-cisoidal and cis-transoidal helices require different times to decrease their ECD signal by 50 % (t1/2 ), depending on the degree of compression or stretching of the helix, establishing a relationship between the secondary structure adopted by PPA (ω1 ) and the time required to lose the ECD vinylic signal by light irradiation.
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Affiliation(s)
- Francisco Rey-Tarrío
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - Rafael Rodríguez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - Emilio Quiñoá
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - Ricardo Riguera
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - Félix Freire
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782, Santiago de Compostela, Spain
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15
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Merten C. Recent Advances in the Application of Vibrational Circular Dichroism Spectroscopy for the Characterization of Asymmetric Catalysts. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000876] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Christian Merten
- Fakultät für Chemie und Biochemie Organische Chemie II Ruhr Universität Bochum Universitätsstraße 150 44801 Bochum Germany
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16
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Cobos K, Rodríguez R, Domarco O, Fernández B, Quiñoá E, Riguera R, Freire F. Polymeric Helical Structures à la Carte by Rational Design of Monomers. Macromolecules 2020. [DOI: 10.1021/acs.macromol.0c00085] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Katherine Cobos
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Rafael Rodríguez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Olaya Domarco
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Berta Fernández
- Departamento de Química Física, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Emilio Quiñoá
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Ricardo Riguera
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Félix Freire
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
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17
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Palomo L, Rodríguez R, Medina S, Quiñoá E, Casado J, Freire F, Ramírez FJ. Raman Optical Activity (ROA) as a New Tool to Elucidate the Helical Structure of Poly(phenylacetylene)s. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202000651] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Luis Palomo
- Departamento de Química Física Facultad de Ciencias Universidad de Málaga Campus de Teatinos Málaga 29071 Spain
| | - Rafael Rodríguez
- Centro Singular de Investigación en Química Biolóxica e Materials Moleculares (CIQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela Santiago de Compostela 15782 Spain
| | - Samara Medina
- Departamento de Química Física Facultad de Ciencias Universidad de Málaga Campus de Teatinos Málaga 29071 Spain
| | - Emilio Quiñoá
- Centro Singular de Investigación en Química Biolóxica e Materials Moleculares (CIQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela Santiago de Compostela 15782 Spain
| | - Juan Casado
- Departamento de Química Física Facultad de Ciencias Universidad de Málaga Campus de Teatinos Málaga 29071 Spain
| | - Félix Freire
- Centro Singular de Investigación en Química Biolóxica e Materials Moleculares (CIQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela Santiago de Compostela 15782 Spain
| | - Francisco J. Ramírez
- Departamento de Química Física Facultad de Ciencias Universidad de Málaga Campus de Teatinos Málaga 29071 Spain
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18
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Palomo L, Rodríguez R, Medina S, Quiñoá E, Casado J, Freire F, Ramírez FJ. Raman Optical Activity (ROA) as a New Tool to Elucidate the Helical Structure of Poly(phenylacetylene)s. Angew Chem Int Ed Engl 2020; 59:9080-9087. [PMID: 32125060 DOI: 10.1002/anie.202000651] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Revised: 02/18/2020] [Indexed: 02/02/2023]
Abstract
Poly(phenylacetylene)s are a family of helical polymers constituted by conjugated double bonds. Raman spectra of these polymers show a structural fingerprint of the polyene backbone which, in combination with its helical orientation, makes them good candidates to be studied by Raman optical activity (ROA). Four different well-known poly(phenylacetylene)s adopting different scaffolds and ten different helical senses have been prepared. Raman and ROA spectra were recorded and allowed to establish ROA-spectrum/helical-sense relationships: a left/right-handed orientation of the polyene backbone (Mhelix /Phelix ) produces a triplet of positive/negative ROA bands. Raman and ROA spectra of each polymer exhibited the same profile, and the sign of the ROA spectrum was opposite to the lowest-energy electronic circular dichroism (ECD) band, indicating a resonance effect. Resonance ROA appears then as an indicator of the helical sense of poly(phenylacetylene)s, especially for those with an extra Cotton band in the ECD spectrum, where a wrong helical sense is assigned based on ECD, while ROA alerts of this misassignment.
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Affiliation(s)
- Luis Palomo
- Departamento de Química Física, Facultad de Ciencias, Universidad de Málaga, Campus de Teatinos, Málaga, 29071, Spain
| | - Rafael Rodríguez
- Centro Singular de Investigación en Química Biolóxica e Materials Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, Santiago de Compostela, 15782, Spain
| | - Samara Medina
- Departamento de Química Física, Facultad de Ciencias, Universidad de Málaga, Campus de Teatinos, Málaga, 29071, Spain
| | - Emilio Quiñoá
- Centro Singular de Investigación en Química Biolóxica e Materials Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, Santiago de Compostela, 15782, Spain
| | - Juan Casado
- Departamento de Química Física, Facultad de Ciencias, Universidad de Málaga, Campus de Teatinos, Málaga, 29071, Spain
| | - Félix Freire
- Centro Singular de Investigación en Química Biolóxica e Materials Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, Santiago de Compostela, 15782, Spain
| | - Francisco J Ramírez
- Departamento de Química Física, Facultad de Ciencias, Universidad de Málaga, Campus de Teatinos, Málaga, 29071, Spain
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19
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Fernández B, Rodríguez R, Quiñoá E, Riguera R, Freire F. Decoding the ECD Spectra of Poly(phenylacetylene)s: Structural Significance. ACS OMEGA 2019; 4:5233-5240. [PMID: 31459695 PMCID: PMC6648364 DOI: 10.1021/acsomega.9b00122] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Accepted: 02/08/2019] [Indexed: 06/10/2023]
Abstract
The role of the main dihedral angles in the electronic circular dichroism (ECD) spectra of poly(phenylacetylene)s (PPAs) was estimated by using time-dependent density functional theory (TD-DFT) for oligo(phenylacetylene)s (n = 12). These studies reveal that in cis-transoidal arrangements, the first Cotton effect is dominated by excitations involving molecular orbitals (MOs) mainly related to the polyene backbone. Hence, for this scaffold, the ± sign of the first Cotton effect reflects the P/M helical sense of the internal helix of the polymer. However, in cis-cisoidal arrangements, contribution of MOs in the polyene and the aryl rings of the PPA backbone produce the first Cotton effect band. As a result, two different ECD signatures with three or four alternating Cotton effects can be produced depending on the sign of the ω1 and ω3 dihedral angles which determine the helical sense of the polyene (ω1) and the relative orientation of the aryl ring toward the polyene (ω3), respectively. Thus, on the one hand, if ω1 and ω3 rotate in opposite directions, a CD with three alternating Cotton effects is observed, where the sign of first Cotton correlates with the P/M helical sense of the polyene. On the other hand, if ω1 and ω3 rotate in the same direction, a CD signature with four alternating Cotton effects is produced where the information relative to the P/M helical sense of the polyene is contained in the second Cotton effect.
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Affiliation(s)
- Berta Fernández
- Department
of Physical Chemistry, University of Santiago
de Compostela, 15782 Santiago de Compostela, Spain
| | - Rafael Rodríguez
- Centro
Singular de Investigación en Química Biolóxica
e Materiais Moleculares (CiQUS) and Departamento de Química
Orgánica, Universidade de Santiago
de Compostela, 15782 Santiago de Compostela, Spain
| | - Emilio Quiñoá
- Centro
Singular de Investigación en Química Biolóxica
e Materiais Moleculares (CiQUS) and Departamento de Química
Orgánica, Universidade de Santiago
de Compostela, 15782 Santiago de Compostela, Spain
| | - Ricardo Riguera
- Centro
Singular de Investigación en Química Biolóxica
e Materiais Moleculares (CiQUS) and Departamento de Química
Orgánica, Universidade de Santiago
de Compostela, 15782 Santiago de Compostela, Spain
| | - Félix Freire
- Centro
Singular de Investigación en Química Biolóxica
e Materiais Moleculares (CiQUS) and Departamento de Química
Orgánica, Universidade de Santiago
de Compostela, 15782 Santiago de Compostela, Spain
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20
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Teraguchi M, Nahata N, Nishimura T, Aoki T, Kaneko T. Helix-Sense-Selective Polymerization of Phenylacetylenes Having a Porphyrin and a Zinc-Porphyrin Group: One-Handed Helical Arrangement of Porphyrin Pendants. Polymers (Basel) 2019; 11:E274. [PMID: 30960258 PMCID: PMC6419054 DOI: 10.3390/polym11020274] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Revised: 01/02/2019] [Accepted: 02/02/2019] [Indexed: 11/16/2022] Open
Abstract
Newly synthesized two kinds of achiral phenylacetylenes having a free-base- or a zinc-porphyrin (1 and Zn1, respectively) were polymerized by using a chiral rhodium catalyst system, Rh⁺(nbd)[(η⁶-C₆H₅)B⁻(C₆H₅)₃] catalyst and (R)-(+)- or (S)-(⁻)-1-phenylethylamine ((R)- or (S)-PEA, respectively) cocatalyst. Poly(1) and poly(Zn1) in THF showed a Cotton signal at the absorption region of the porphyrin and the main chain in the circular dichroism (CD) spectra. This result suggests that poly(1) and poly(Zn1) exist in a conformation with an excess of one-handed helix sense and the porphyrin moiety arranged in chiral helical fashion. The one-handed helical structure of poly(1) could be sustained in a mixture of THF/HMPA (10/2, v/v) due to stabilizing by stacking effect of porphyrin moieties along the main chain. This is the first example about helix-sense-selective polymerization by using Rh⁺(nbd)[(η⁶-C₆H₅)B⁻(C₆H₅)₃] catalyst. Additionally, poly(Zn1) showed about 10 times larger CD intensity in comparison with poly(1). This result suggests the regularity of arrangement of the porphyrin in poly(Zn1) is higher compared with poly(1). Spatial arrangement of porphyrins was achieved by utilizing a one-handed helical poly(phenylacetylenes) as a template.
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Affiliation(s)
- Masahiro Teraguchi
- Department of Chemistry and Chemical Engineering, Niigata University, Ikarashi 2-8050, Nishi-ku, Niigata 950-2181, Japan.
- Graduate School of Science and Technology, Niigata University, Ikarashi 2-8050, Nishi-ku, Niigata 950-2181, Japan.
| | - Nobuyuki Nahata
- Department of Chemistry and Chemical Engineering, Niigata University, Ikarashi 2-8050, Nishi-ku, Niigata 950-2181, Japan.
| | - Takahiro Nishimura
- Department of Chemistry and Chemical Engineering, Niigata University, Ikarashi 2-8050, Nishi-ku, Niigata 950-2181, Japan.
| | - Toshiki Aoki
- Department of Chemistry and Chemical Engineering, Niigata University, Ikarashi 2-8050, Nishi-ku, Niigata 950-2181, Japan.
- Graduate School of Science and Technology, Niigata University, Ikarashi 2-8050, Nishi-ku, Niigata 950-2181, Japan.
| | - Takashi Kaneko
- Department of Chemistry and Chemical Engineering, Niigata University, Ikarashi 2-8050, Nishi-ku, Niigata 950-2181, Japan.
- Graduate School of Science and Technology, Niigata University, Ikarashi 2-8050, Nishi-ku, Niigata 950-2181, Japan.
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21
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Fukuda M, Rodríguez R, Fernández Z, Nishimura T, Hirose D, Watanabe G, Quiñoá E, Freire F, Maeda K. Macromolecular helicity control of poly(phenyl isocyanate)s with a single stimuli-responsive chiral switch. Chem Commun (Camb) 2019; 55:7906-7909. [PMID: 31215555 DOI: 10.1039/c9cc03555a] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The introduction of a single chiral substituent with a switchable conformer equilibrium at the poly(phenyl isocyanate) terminus allowed the control of the helical sense of the polymer backbone using various external stimuli. Helical sense enhancement was achieved through a domino effect, where the helical sense was assigned by VCD spectroscopy and DFT calculations.
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Affiliation(s)
- Mayu Fukuda
- Graduate School of Natural Science and Technology, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.
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