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Ishizuka R. Martini 3D-OZ: A Theoretical Investigation of Solvation Shell Structures and Solvation Free Energies of Martini Coarse-Grained Proteins. J Phys Chem B 2024; 128:8522-8529. [PMID: 39180742 DOI: 10.1021/acs.jpcb.4c03897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/26/2024]
Abstract
We investigate the properties of aqueous solutions using integral equation theories and molecular dynamics (MD) simulations within the framework of the MARTINI coarse-grained force field. The integral equation theory used in the present work is based on the Ornstein-Zernike equation coupled with the hypernetted chain (HNC) and Kovalenko-Hirata (KH) closures. Overall, the solvation shell structures and solvation thermodynamics in the HNC approximation are shown to be in better agreement with those from the MD simulation than the KH results. Especially, through the analysis of spatial distribution functions of water around a protein, we have demonstrated that the HNC approximation can provide the highly anisotropic structure of the solvation shell of the protein. On the other hand, the KH approximation works well for simple particle solutes, but the results for highly hydrated proteins deviate quite significantly from the MD results. We further explore in detail the reason underlying the deviation caused by the KH approximation. Lastly, a potential application of the integral equation theory with the MARTINI model is outlined.
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Affiliation(s)
- Ryosuke Ishizuka
- Zkanics F.P.S., Side-6 Senriyama-West, Suita, Osaka 565-0851, Japan
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2
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Capobianco A, Wiktor J, Landi A, Ambrosio F, Peluso A. Electron Localization and Mobility in Monolayer Fullerene Networks. NANO LETTERS 2024; 24:8335-8342. [PMID: 38767281 DOI: 10.1021/acs.nanolett.4c01695] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2024]
Abstract
The novel 2D quasi-hexagonal phase of covalently bonded fullerene molecules (qHP C60), the so-called graphullerene, has displayed far superior electron mobilities, if compared to the parent van der Waals three-dimensional crystal (vdW C60). Herein, we present a comparative study of the electronic properties of vdW and qHP C60 using state-of-the-art electronic-structure calculations and a full quantum-mechanical treatment of electron transfer. We show that both materials entail polaronic localization of electrons with similar binding energies (≈0.1 eV) and, therefore, they share the same charge transport via polaron hopping. In fact, we quantitatively reproduce the sizable increment of the electron mobility measured for qHP C60 and identify its origin in the increased electronic coupling between C60 units.
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Affiliation(s)
- Amedeo Capobianco
- Dipartimento di Chimica e Biologia Adolfo Zambelli, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano (SA), Italy
| | - Julia Wiktor
- Department of Physics, Chalmers University of Technology, SE-412 96 Gothenburg, Sweden
| | - Alessandro Landi
- Dipartimento di Chimica e Biologia Adolfo Zambelli, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano (SA), Italy
| | - Francesco Ambrosio
- Dipartimento di Chimica e Biologia Adolfo Zambelli, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano (SA), Italy
- Dipartimento di Scienze, Università degli Studi della Basilicata, Viale dell'Ateneo Lucano, 10-85100 Potenza, Italy
| | - Andrea Peluso
- Dipartimento di Chimica e Biologia Adolfo Zambelli, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano (SA), Italy
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3
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Herbert JM. Visualizing and characterizing excited states from time-dependent density functional theory. Phys Chem Chem Phys 2024; 26:3755-3794. [PMID: 38226636 DOI: 10.1039/d3cp04226j] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2024]
Abstract
Time-dependent density functional theory (TD-DFT) is the most widely-used electronic structure method for excited states, due to a favorable combination of low cost and semi-quantitative accuracy in many contexts, even if there are well recognized limitations. This Perspective describes various ways in which excited states from TD-DFT calculations can be visualized and analyzed, both qualitatively and quantitatively. This includes not just orbitals and densities but also well-defined statistical measures of electron-hole separation and of Frenkel-type exciton delocalization. Emphasis is placed on mathematical connections between methods that have often been discussed separately. Particular attention is paid to charge-transfer diagnostics, which provide indicators of when TD-DFT may not be trustworthy due to its categorical failure to describe long-range electron transfer. Measures of exciton size and charge separation that are directly connected to the underlying transition density are recommended over more ad hoc metrics for quantifying charge-transfer character.
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Affiliation(s)
- John M Herbert
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA.
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Bhat V, Callaway CP, Risko C. Computational Approaches for Organic Semiconductors: From Chemical and Physical Understanding to Predicting New Materials. Chem Rev 2023. [PMID: 37141497 DOI: 10.1021/acs.chemrev.2c00704] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
While a complete understanding of organic semiconductor (OSC) design principles remains elusive, computational methods─ranging from techniques based in classical and quantum mechanics to more recent data-enabled models─can complement experimental observations and provide deep physicochemical insights into OSC structure-processing-property relationships, offering new capabilities for in silico OSC discovery and design. In this Review, we trace the evolution of these computational methods and their application to OSCs, beginning with early quantum-chemical methods to investigate resonance in benzene and building to recent machine-learning (ML) techniques and their application to ever more sophisticated OSC scientific and engineering challenges. Along the way, we highlight the limitations of the methods and how sophisticated physical and mathematical frameworks have been created to overcome those limitations. We illustrate applications of these methods to a range of specific challenges in OSCs derived from π-conjugated polymers and molecules, including predicting charge-carrier transport, modeling chain conformations and bulk morphology, estimating thermomechanical properties, and describing phonons and thermal transport, to name a few. Through these examples, we demonstrate how advances in computational methods accelerate the deployment of OSCsin wide-ranging technologies, such as organic photovoltaics (OPVs), organic light-emitting diodes (OLEDs), organic thermoelectrics, organic batteries, and organic (bio)sensors. We conclude by providing an outlook for the future development of computational techniques to discover and assess the properties of high-performing OSCs with greater accuracy.
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Affiliation(s)
- Vinayak Bhat
- Department of Chemistry & Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, United States
| | - Connor P Callaway
- Department of Chemistry & Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, United States
| | - Chad Risko
- Department of Chemistry & Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, United States
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5
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Balzer D, Kassal I. Mechanism of Delocalization-Enhanced Exciton Transport in Disordered Organic Semiconductors. J Phys Chem Lett 2023; 14:2155-2162. [PMID: 36802583 DOI: 10.1021/acs.jpclett.2c03886] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Large exciton diffusion lengths generally improve the performance of organic semiconductor devices, because they enable energy to be transported farther during the exciton lifetime. However, the physics of exciton motion in disordered organic materials is not fully understood, and modeling the transport of quantum-mechanically delocalized excitons in disordered organic semiconductors is a computational challenge. Here, we describe delocalized kinetic Monte Carlo (dKMC), the first model of three-dimensional exciton transport in organic semiconductors that includes delocalization, disorder, and polaron formation. We find that delocalization can dramatically increase exciton transport; for example, delocalization across less than two molecules in each direction can increase the exciton diffusion coefficient by over an order of magnitude. The mechanism for the enhancement is 2-fold: delocalization enables excitons to hop both more frequently and further in each hop. We also quantify the effect of transient delocalization (short-lived periods where excitons become highly delocalized) and show that it depends strongly upon the disorder and transition dipole moments.
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Affiliation(s)
- Daniel Balzer
- School of Chemistry, University of Sydney, Sydney, New South Wales 2006, Australia
| | - Ivan Kassal
- School of Chemistry, University of Sydney, Sydney, New South Wales 2006, Australia
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Balzer D, Kassal I. Even a little delocalization produces large kinetic enhancements of charge-separation efficiency in organic photovoltaics. SCIENCE ADVANCES 2022; 8:eabl9692. [PMID: 35960797 PMCID: PMC9374333 DOI: 10.1126/sciadv.abl9692] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Accepted: 06/28/2022] [Indexed: 05/25/2023]
Abstract
In organic photovoltaics, charges can separate efficiently even if their Coulomb attraction is an order of magnitude greater than the available thermal energy. Delocalization has been suggested to explain this fact, because it could increase the initial separation of charges in the charge-transfer (CT) state, reducing their attraction. However, understanding the mechanism requires a kinetic model of delocalized charge separation, which has proven difficult because it involves tracking the correlated quantum-mechanical motion of the electron and the hole in large simulation boxes required for disordered materials. Here, we report the first three-dimensional simulations of charge-separation dynamics in the presence of disorder, delocalization, and polaron formation, finding that even slight delocalization, across less than two molecules, can substantially enhance the charge-separation efficiency, even starting with thermalized CT states. Delocalization does not enhance efficiency by reducing the Coulomb attraction; instead, the enhancement is a kinetic effect produced by the increased overlap of electronic states.
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Balzer D, Smolders TJAM, Blyth D, Hood SN, Kassal I. Delocalised kinetic Monte Carlo for simulating delocalisation-enhanced charge and exciton transport in disordered materials. Chem Sci 2020; 12:2276-2285. [PMID: 34163994 PMCID: PMC8179315 DOI: 10.1039/d0sc04116e] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 12/16/2020] [Indexed: 01/08/2023] Open
Abstract
Charge transport is well understood in both highly ordered materials (band conduction) or highly disordered ones (hopping conduction). In moderately disordered materials-including many organic semiconductors-the approximations valid in either extreme break down, making it difficult to accurately model the conduction. In particular, describing wavefunction delocalisation requires a quantum treatment, which is difficult in disordered materials that lack periodicity. Here, we present the first three-dimensional model of partially delocalised charge and exciton transport in materials in the intermediate disorder regime. Our approach is based on polaron-transformed Redfield theory, but overcomes several computational roadblocks by mapping the quantum-mechanical techniques onto kinetic Monte Carlo. Our theory, delocalised kinetic Monte Carlo (dKMC), shows that the fundamental physics of transport in moderately disordered materials is that of charges hopping between partially delocalised electronic states. Our results reveal why standard kinetic Monte Carlo can dramatically underestimate mobilities even in disordered organic semiconductors, where even a little delocalisation can substantially enhance mobilities, as well as showing that three-dimensional calculations capture important delocalisation effects neglected in lower-dimensional approximations.
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Affiliation(s)
- Daniel Balzer
- School of Chemistry and University of Sydney Nano Institute, University of Sydney NSW 2006 Australia
| | - Thijs J A M Smolders
- School of Chemistry and University of Sydney Nano Institute, University of Sydney NSW 2006 Australia
- Institute for Molecules and Materials, Radboud University 6525 AJ Nijmegen The Netherlands
| | - David Blyth
- School of Mathematics and Physics, University of Queensland St. Lucia QLD 4072 Australia
| | - Samantha N Hood
- School of Mathematics and Physics, University of Queensland St. Lucia QLD 4072 Australia
| | - Ivan Kassal
- School of Chemistry and University of Sydney Nano Institute, University of Sydney NSW 2006 Australia
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Giannini S, Carof A, Ellis M, Yang H, Ziogos OG, Ghosh S, Blumberger J. Quantum localization and delocalization of charge carriers in organic semiconducting crystals. Nat Commun 2019; 10:3843. [PMID: 31451687 PMCID: PMC6710274 DOI: 10.1038/s41467-019-11775-9] [Citation(s) in RCA: 89] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Accepted: 08/02/2019] [Indexed: 02/06/2023] Open
Abstract
Charge carrier transport in organic semiconductors is at the heart of many revolutionary technologies ranging from organic transistors, light-emitting diodes, flexible displays and photovoltaic cells. Yet, the nature of charge carriers and their transport mechanism in these materials is still unclear. Here we show that by solving the time-dependent electronic Schrödinger equation coupled to nuclear motion for eight organic molecular crystals, the excess charge carrier forms a polaron delocalized over up to 10-20 molecules in the most conductive crystals. The polaron propagates through the crystal by diffusive jumps over several lattice spacings at a time during which it expands more than twice its size. Computed values for polaron size and charge mobility are in excellent agreement with experimental estimates and correlate very well with the recently proposed transient localization theory.
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Affiliation(s)
- Samuele Giannini
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, WC1E 6BT, UK
| | - Antoine Carof
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, WC1E 6BT, UK
| | - Matthew Ellis
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, WC1E 6BT, UK
| | - Hui Yang
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, WC1E 6BT, UK
| | - Orestis George Ziogos
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, WC1E 6BT, UK
| | - Soumya Ghosh
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, WC1E 6BT, UK
| | - Jochen Blumberger
- Department of Physics and Astronomy and Thomas Young Centre, University College London, London, WC1E 6BT, UK.
- Institute for Advanced Study, Technische Universität München, Lichtenbergstrasse 2 a, D-85748, Garching, Germany.
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