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For: Winkels K, Koudelka T, Kaulich PT, Leippe M, Tholey A. Validation of Top-Down Proteomics Data by Bottom-Up-Based N-Terminomics Reveals Pitfalls in Top-Down-Based Terminomics Workflows. J Proteome Res 2022;21:2185-2196. [PMID: 35972260 DOI: 10.1021/acs.jproteome.2c00277] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Takemori N, Kaulich PT, Hahn J, Schlüter H, Sugiyama N, Tsumagari K, Ishihama Y, Fuchs S, Iwasaki M, Müller FJ, Neusüß C, Jeong K, Kohlbacher O, Shimizu Y, Otsuka Y, Sato H, Sasaki K, Minegishi Y, Kodera Y, Fernandez-Cuesta I, Krichel B, Araki N, Tholey A. Meeting Report: The Japanese-German Symposium on the "Advancement and Application of Proteoform-Centric Proteomics" (Kyoto, Japan, 2024). Proteomics 2025:e202400394. [PMID: 40390579 DOI: 10.1002/pmic.202400394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2025] [Accepted: 03/31/2025] [Indexed: 05/21/2025]
2
Matzanke T, Kaulich PT, Jeong K, Takemori A, Takemori N, Kohlbacher O, Tholey A. Cysteine-Directed Isobaric Labeling Combined with GeLC-FAIMS-MS for Quantitative Top-Down Proteomics. J Proteome Res 2025;24:1470-1480. [PMID: 39885717 PMCID: PMC11894657 DOI: 10.1021/acs.jproteome.4c00835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Revised: 12/18/2024] [Accepted: 01/23/2025] [Indexed: 02/01/2025]
3
Kaulich PT, Jeong K, Kohlbacher O, Tholey A. Influence of different sample preparation approaches on proteoform identification by top-down proteomics. Nat Methods 2024;21:2397-2407. [PMID: 39438734 PMCID: PMC11621018 DOI: 10.1038/s41592-024-02481-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Accepted: 09/23/2024] [Indexed: 10/25/2024]
4
Song M, Zhang Y, Zhu W, Zhou W, Li X, Yang A, Tong P, Wu Z, Chen H. Mass Spectrometry Analysis on the Breakage of Allergens in High-Molecular-Mass Polymer of Roasted Peanuts. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024;72:3142-3149. [PMID: 38299554 DOI: 10.1021/acs.jafc.3c07007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/02/2024]
5
Kaulich PT, Cassidy L, Tholey A. Identification of proteoforms by top-down proteomics using two-dimensional low/low pH reversed-phase liquid chromatography-mass spectrometry. Proteomics 2024;24:e2200542. [PMID: 36815320 DOI: 10.1002/pmic.202200542] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 02/09/2023] [Accepted: 02/13/2023] [Indexed: 02/24/2023]
6
Cassidy L, Kaulich PT, Tholey A. Proteoforms expand the world of microproteins and short open reading frame-encoded peptides. iScience 2023;26:106069. [PMID: 36818287 PMCID: PMC9929600 DOI: 10.1016/j.isci.2023.106069] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
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