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Goulding E, Ward LC, Allan FE, Dittman D, Salcedo‐Sora JE, Carnell AJ. Development of the Esterase PestE for Amide Bond Synthesis Under Aqueous Conditions: Enzyme Cascades for Converting Waste PET into Tamibarotene. Angew Chem Int Ed Engl 2025; 64:e202414162. [PMID: 39466189 PMCID: PMC11720379 DOI: 10.1002/anie.202414162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Revised: 10/17/2024] [Accepted: 10/28/2024] [Indexed: 10/29/2024]
Abstract
A growing number of hydrolase enzymes show promiscuous acyltransferase activity, even under aqueous conditions. Here we report, for the first time, the ability of Pyrobaculum calidifontis VA1 esterase (PestE) to catalyse the formation of a wide range of amides in buffer, where the acyl donor forms a significant structural component in the amide product. The reactions occur under mild conditions and can achieve conversions up to 97 % in 6 h for formation of N-benzylfuranamide as the model reaction. We demonstrate PestE's potential in enzyme cascades to make amides from waste PET plastic and the conversion of the terephthalic acid product to tamibarotene, a drug with activity against acute leukemia. Rational mutagenesis led to identification of PestE variants F33L F289A and F33L. F33L F289A increased conversion of N-benzylfuranamide by 1.2-fold, and F33L gave a 4-fold increase in conversion to tamibarotene.
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Affiliation(s)
- Ellie Goulding
- Department of ChemistryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUnited Kingdom
| | - Lucy C. Ward
- Department of ChemistryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUnited Kingdom
| | - Faye E. Allan
- Department of ChemistryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUnited Kingdom
| | - Drew Dittman
- Department of ChemistryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUnited Kingdom
| | - Jesus E. Salcedo‐Sora
- GeneMillInstitute of Integrative BiologyUniversity of LiverpoolCrown StreetLiverpoolL69 7ZBUnited Kingdom
| | - Andrew J. Carnell
- Department of ChemistryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUnited Kingdom
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Huo T, Zhao X, Cheng Z, Wei J, Zhu M, Dou X, Jiao N. Late-stage modification of bioactive compounds: Improving druggability through efficient molecular editing. Acta Pharm Sin B 2024; 14:1030-1076. [PMID: 38487004 PMCID: PMC10935128 DOI: 10.1016/j.apsb.2023.11.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 10/14/2023] [Accepted: 11/13/2023] [Indexed: 03/17/2024] Open
Abstract
Synthetic chemistry plays an indispensable role in drug discovery, contributing to hit compounds identification, lead compounds optimization, candidate drugs preparation, and so on. As Nobel Prize laureate James Black emphasized, "the most fruitful basis for the discovery of a new drug is to start with an old drug"1. Late-stage modification or functionalization of drugs, natural products and bioactive compounds have garnered significant interest due to its ability to introduce diverse elements into bioactive compounds promptly. Such modifications alter the chemical space and physiochemical properties of these compounds, ultimately influencing their potency and druggability. To enrich a toolbox of chemical modification methods for drug discovery, this review focuses on the incorporation of halogen, oxygen, and nitrogen-the ubiquitous elements in pharmacophore components of the marketed drugs-through late-stage modification in recent two decades, and discusses the state and challenges faced in these fields. We also emphasize that increasing cooperation between chemists and pharmacists may be conducive to the rapid discovery of new activities of the functionalized molecules. Ultimately, we hope this review would serve as a valuable resource, facilitating the application of late-stage modification in the construction of novel molecules and inspiring innovative concepts for designing and building new drugs.
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Affiliation(s)
- Tongyu Huo
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Xinyi Zhao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Zengrui Cheng
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Jialiang Wei
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
- Changping Laboratory, Beijing 102206, China
| | - Minghui Zhu
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Xiaodong Dou
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Ning Jiao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
- Changping Laboratory, Beijing 102206, China
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, East China Normal University, Shanghai 200062, China
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Magano J. Large-Scale Amidations in Process Chemistry: Practical Considerations for Reagent Selection and Reaction Execution. Org Process Res Dev 2022. [DOI: 10.1021/acs.oprd.2c00005] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Javier Magano
- Chemical Research & Development, Pfizer Worldwide Research & Development, Eastern Point Road, Groton, Connecticut 06340, United States
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Yang Q, Zhao Y, Ma D. Cu-Mediated Ullmann-Type Cross-Coupling and Industrial Applications in Route Design, Process Development, and Scale-up of Pharmaceutical and Agrochemical Processes. Org Process Res Dev 2022. [DOI: 10.1021/acs.oprd.2c00050] [Citation(s) in RCA: 105] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Qiang Yang
- Synthetic Molecule Design and Development, Lilly Research Laboratories, Eli Lilly and Company, Indianapolis, Indiana 46285, United States
| | - Yinsong Zhao
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China
| | - Dawei Ma
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200032, China
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Liao C, Li J, Chen X, Lu J, Liu Q, Chen L, Huang Y, Li Y. Selective synthesis of pyridyl pyridones and oxydipyridines by transition-metal-free hydroxylation and arylation of 2-fluoropyridine derivatives. Org Biomol Chem 2020; 18:1185-1193. [PMID: 31989995 DOI: 10.1039/c9ob02661d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
An efficient protocol for the construction of various pyridyl pyridone and oxydipyridine derivatives through a hydroxylation and arylation tandem reaction of 2-fluoropyridines is reported. Under simple transition-metal-free conditions, the reaction provided a series of products in good to excellent yields, and their structures were confirmed by crystal diffraction analysis. Furthermore, the controlling effect of 6-position substituents on the highly selective synthesis of pyridone and oxydipyridine was studied.
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Affiliation(s)
- Chunshu Liao
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, 529020 China.
| | - Jianrong Li
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, 529020 China.
| | - Xiaoqiong Chen
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, 529020 China.
| | - Jingjun Lu
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, 529020 China.
| | - Qiang Liu
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, 529020 China. and Center of Basic Molecular Science, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Lu Chen
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, 529020 China.
| | - Yubing Huang
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, 529020 China.
| | - Yibiao Li
- School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, 529020 China.
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Microwave-Assisted Classic Ullmann C-C Coupling Polymerization for Acceptor-Acceptor Homopolymers. Polymers (Basel) 2019; 11:polym11111741. [PMID: 31652961 PMCID: PMC6918342 DOI: 10.3390/polym11111741] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Revised: 10/17/2019] [Accepted: 10/19/2019] [Indexed: 01/29/2023] Open
Abstract
Developing cheap, clean and atomic-efficient synthetic methodologies for conjugated polymers are always critical for the field of organic electronics. Herein, classic Ullmann coupling polymerization is developed to synthesize a series of Acceptor-Acceptor (A-A) type homopolymers with microwave-assistance, which are supported by nuclear magnetic resonance (NMR), matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF), elemental analysis (EA) and gel permeation chromatography (GPC). The physicochemical properties of these polymers are studied by UV-vis spectroscopy, cyclic voltammetry (CV), thermal gravimetric analysis (TGA), and density functional theory (DFT) calculation. Furthermore, these A-A homopolymers are used as acceptors for all-polymer solar cells (All-PSCs), affording a promising efficiency of 3.08%, which is the highest value for A-A-homopolymer-based organic solar cells.
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Zheng YL, Newman SG. Methyl Esters as Cross-Coupling Electrophiles: Direct Synthesis of Amide Bonds. ACS Catal 2019. [DOI: 10.1021/acscatal.9b00884] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Yan-Long Zheng
- Centre for Catalysis Research and Innovation, Department of Chemistry and Biomolecular Sciences, University of Ottawa, 10 Marie-Curie, Ottawa, Ontario K1N 6N5, Canada
| | - Stephen G. Newman
- Centre for Catalysis Research and Innovation, Department of Chemistry and Biomolecular Sciences, University of Ottawa, 10 Marie-Curie, Ottawa, Ontario K1N 6N5, Canada
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Yavari I, Taheri Z, Sheikhi S, Halvagar MR. A synthesis of (arylthio-ethylidene)indolin-2-ones via S-arylation of oxoindolin-ethanethiolates with aryl halides. J Sulphur Chem 2018. [DOI: 10.1080/17415993.2018.1540701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Issa Yavari
- Department of Chemistry, Tarbiat Modares University, Tehran, Iran
| | - Zohreh Taheri
- Department of Chemistry, Tarbiat Modares University, Tehran, Iran
| | - Sara Sheikhi
- Department of Chemistry, Tarbiat Modares University, Tehran, Iran
| | - Mohammad Reza Halvagar
- Department of Inorganic Chemistry, Chemistry and Chemical Engineering Research Center of Iran, Tehran, Iran
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