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Burchell-Reyes K, Paquin JF. Fluorohydrins and where to find them: recent asymmetric syntheses of β-fluoro alcohols and their derivatives. Org Biomol Chem 2025; 23:4593-4615. [PMID: 40241682 DOI: 10.1039/d5ob00330j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/18/2025]
Abstract
Fluorohydrins - or β-fluorinated alcohols - and their fluorinated group derivatives are a biologically relevant class of compounds, with applications ranging from PET tracers to cancer therapeutics. Recent efforts have unlocked asymmetric access to these related motifs through reactions of carbonyls, alkenes, organoboranes, and epoxides or transformations such as cyclizations or ring expansions. The present work provides an overview of synthetic approaches to various fluorohydrins that have been explored in the past decade, as well as selected examples of these syntheses applied to medicinal chemistry.
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Affiliation(s)
- Kelly Burchell-Reyes
- PROTEO, CCVC, Département de chimie, Université Laval, Québec, QC, G1V 0A6, Canada.
| | - Jean-François Paquin
- PROTEO, CCVC, Département de chimie, Université Laval, Québec, QC, G1V 0A6, Canada.
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Cermjani E, Deckers C, Maskos M, Rehm TH. Selective Decarboxylative Fluorination of β-Keto Acids in Aqueous Media: 19F-NMR-Assisted Batch Optimization and Transfer to Continuous Flow. Chemistry 2025; 31:e202404435. [PMID: 39715020 DOI: 10.1002/chem.202404435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2024] [Accepted: 12/18/2024] [Indexed: 12/25/2024]
Abstract
The selective decarboxylative fluorination of 3-oxo-3-phenylpropionic acid is used as a benchmark reaction to optimize it under biocompatible conditions in batch and to transfer it to continuous flow mode. The reaction conditions are varied with respect to temperature, fluorinating reagents, inorganic base additives, and pH, as these parameters have been identified as having a significant impact on the process. The formation of the products and any by-products is analyzed using gas chromatography (GC) and 19F nuclear magnetic resonance spectroscopy (NMR). Once optimal conditions have been determined, the reaction is carried out using an automated continuous laboratory synthesis system that features a mesostructured capillary reactor and an integrated 19F-NMR spectrometer for real-time monitoring of the reaction. The work presented here represents the initial phase of a multi-step continuous flow process that will include additional biocatalyzed downstream reactions in future applications.
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Affiliation(s)
- Egzon Cermjani
- Fraunhofer Institute for Microengineering and Microsystems IMM, Carl-Zeiss-Strasse 18-20, 55129, Mainz, Germany
- Johannes Gutenberg-University Mainz, Department of Chemistry, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Christoph Deckers
- Fraunhofer Institute for Microengineering and Microsystems IMM, Carl-Zeiss-Strasse 18-20, 55129, Mainz, Germany
| | - Michael Maskos
- Fraunhofer Institute for Microengineering and Microsystems IMM, Carl-Zeiss-Strasse 18-20, 55129, Mainz, Germany
- Johannes Gutenberg-University Mainz, Department of Chemistry, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Thomas H Rehm
- Fraunhofer Institute for Microengineering and Microsystems IMM, Carl-Zeiss-Strasse 18-20, 55129, Mainz, Germany
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3
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Vicente J, Friedrich A, Schacherer J, Freel K, Marquina D, Santos A. Whole-Genome Sequencing and Phenotyping Reveal Specific Adaptations of Lachancea thermotolerans to the Winemaking Environment. Mol Ecol 2025:e17667. [PMID: 39912232 DOI: 10.1111/mec.17667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 12/31/2024] [Accepted: 01/17/2025] [Indexed: 02/07/2025]
Abstract
Adaptation to the environment plays an essential role in yeast evolution as a consequence of selective pressures. Lachancea thermotolerans, a yeast related to fermentation and one of the current trends in wine technology research, has undergone an anthropisation process, leading to a notable genomic and phenomic differentiation. Using whole-genome sequencing, of 145 L. thermotolerans strains, we identified six well-defined groups primarily delineated by their ecological origin and exhibiting high levels of genetic diversity. Anthropised strains showed lower genetic diversity due to the selective pressure imposed by the winemaking environment. Strong evidence of anthropisation and adaptation to the wine environment through modification of gene content was also found. Differences in genes involved in the assimilation of alternative carbon and nitrogen sources, such as the MAL31 and DAL5 genes, which confer greater fitness in the winemaking environment, were observed. Additionally, we found that phenotypic traits considered domestication hallmarks are present in anthropised strains. Among these, increased fitness in the presence of ethanol and sulphites, assimilation of non-fermentable carbon sources, and lower levels of residual fructose under fermentative conditions highlight. We hypothesise that lactic acid production in the Saccharomyces-Lachancea lineage is an anthropisation signature linked to winemaking, resulting from the loss of respiratory chain complex I and the evolutionary preference for fermentation over respiration, even in the presence of oxygen. Overall, the results of this work provide valuable insight into the anthropisation process in L. thermotolerans and demonstrate how fermentation environments give rise to similar adaptations in different yeast species.
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Affiliation(s)
- Javier Vicente
- Department of Genetics, Physiology and Microbiology, Unit of Microbiology, Faculty of Biological Sciences, Complutense University of Madrid, Madrid, Spain
| | - Anne Friedrich
- Université de Strasbourg, CNRS, GMGM UMR, Strasbourg, France
| | - Joseph Schacherer
- Université de Strasbourg, CNRS, GMGM UMR, Strasbourg, France
- Institut Universitaire de France, Paris, France
| | - Kelle Freel
- Université de Strasbourg, CNRS, GMGM UMR, Strasbourg, France
| | - Domingo Marquina
- Department of Genetics, Physiology and Microbiology, Unit of Microbiology, Faculty of Biological Sciences, Complutense University of Madrid, Madrid, Spain
| | - Antonio Santos
- Department of Genetics, Physiology and Microbiology, Unit of Microbiology, Faculty of Biological Sciences, Complutense University of Madrid, Madrid, Spain
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Rudzka A, Zdun B, Antos N, Montero LM, Reiter T, Kroutil W, Borowiecki P. Biocatalytic characterization of an alcohol dehydrogenase variant deduced from Lactobacillus kefir in asymmetric hydrogen transfer. Commun Chem 2023; 6:217. [PMID: 37828252 PMCID: PMC10570314 DOI: 10.1038/s42004-023-01013-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 09/26/2023] [Indexed: 10/14/2023] Open
Abstract
Hydrogen transfer biocatalysts to prepare optically pure alcohols are in need, especially when it comes to sterically demanding ketones, whereof the bioreduced products are either essential precursors of pharmaceutically relevant compounds or constitute APIs themselves. In this study, we report on the biocatalytic potential of an anti-Prelog (R)-specific Lactobacillus kefir ADH variant (Lk-ADH-E145F-F147L-Y190C, named Lk-ADH Prince) employed as E. coli/ADH whole-cell biocatalyst and its characterization for stereoselective reduction of prochiral carbonyl substrates. Key enzymatic reaction parameters, including the reaction medium, evaluation of cofactor-dependency, organic co-solvent tolerance, and substrate loading, were determined employing the drug pentoxifylline as a model prochiral ketone. Furthermore, to tap the substrate scope of Lk-ADH Prince in hydrogen transfer reactions, a broad range of 34 carbonylic derivatives was screened. Our data demonstrate that E. coli/Lk-ADH Prince exhibits activity toward a variety of structurally different ketones, furnishing optically active alcohol products at the high conversion of 65-99.9% and in moderate-to-high isolated yields (38-91%) with excellent anti-Prelog (R)-stereoselectivity (up to >99% ee) at substrate concentrations up to 100 mM.
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Affiliation(s)
- Aleksandra Rudzka
- Laboratory of Biocatalysis and Biotransformation, Department of Drugs Technology and Biotechnology, Faculty of Chemistry, Warsaw University of Technology, Koszykowa 75, 00-662, Warsaw, Poland
| | - Beata Zdun
- Laboratory of Biocatalysis and Biotransformation, Department of Drugs Technology and Biotechnology, Faculty of Chemistry, Warsaw University of Technology, Koszykowa 75, 00-662, Warsaw, Poland
| | - Natalia Antos
- Laboratory of Biocatalysis and Biotransformation, Department of Drugs Technology and Biotechnology, Faculty of Chemistry, Warsaw University of Technology, Koszykowa 75, 00-662, Warsaw, Poland
| | - Lia Martínez Montero
- Institute of Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Field of Excellence BioHealth, Heinrichstrasse 28, 8010, Graz, Austria
| | - Tamara Reiter
- Institute of Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Field of Excellence BioHealth, Heinrichstrasse 28, 8010, Graz, Austria
| | - Wolfgang Kroutil
- Institute of Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Field of Excellence BioHealth, Heinrichstrasse 28, 8010, Graz, Austria
| | - Paweł Borowiecki
- Laboratory of Biocatalysis and Biotransformation, Department of Drugs Technology and Biotechnology, Faculty of Chemistry, Warsaw University of Technology, Koszykowa 75, 00-662, Warsaw, Poland.
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Borowiecki P, Rudzka A, Reiter T, Kroutil W. Chemoenzymatic deracemization of lisofylline catalyzed by a (laccase/TEMPO)-alcohol dehydrogenase system. Catal Sci Technol 2022. [DOI: 10.1039/d2cy00145d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
This article reports on a novel biocatalytic method for the synthesis of both enantiomers of lisofylline based on Trametes versicolor laccase, TEMPO as a redox mediator and stereocomplementary recombinant alcohol dehydrogenases as biocatalysts.
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Affiliation(s)
- Paweł Borowiecki
- Laboratory of Biocatalysis and Biotransformation, Department of Drugs Technology and Biotechnology, Faculty of Chemistry, Warsaw University of Technology, Koszykowa St. 75, 00-662 Warsaw, Poland
| | - Aleksandra Rudzka
- Laboratory of Biocatalysis and Biotransformation, Department of Drugs Technology and Biotechnology, Faculty of Chemistry, Warsaw University of Technology, Koszykowa St. 75, 00-662 Warsaw, Poland
| | - Tamara Reiter
- Institute of Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Field of Excellence BioHealth, Heinrichstrasse 28, 8010 Graz, Austria
| | - Wolfgang Kroutil
- Institute of Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Field of Excellence BioHealth, Heinrichstrasse 28, 8010 Graz, Austria
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Broese T, Ehlers P, Langer P, von Langermann J. Chemoenzymatic Asymmetric Synthesis of Pyridine-Based α-Fluorinated Secondary Alcohols. Chembiochem 2021; 22:3314-3318. [PMID: 34520599 PMCID: PMC9293303 DOI: 10.1002/cbic.202100392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 09/09/2021] [Indexed: 11/25/2022]
Abstract
Fluoro‐substituted and heteroaromatic compounds are valuable intermediates for a variety of applications in pharma‐ and agrochemistry and synthetic chemistry. This study investigates the chemoenzymatic preparation of chiral alcohols bearing a heteroaromatic ring with an increasing degree of fluorination in α‐position. Starting from readily available picoline derivatives prochiral α‐halogenated acyl moieties were introduced with excellent selectivity and 64–95 % yield. The formed carbonyl group was subsequently reduced to the corresponding alcohols using the alcohol dehydrogenase from Lactobacillus kefir, yielding an enantiomeric excess of 95–>99 % and up to 98 % yield.
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Affiliation(s)
- Timo Broese
- Institute of Chemistry, Biocatalytic Synthesis Group, University of Rostock, Albert-Einstein-Str. 3 A, 18059, Rostock, Germany.,Graforce GmbH, Johann-Hittorf-Str. 8, 12489, Berlin, Germany
| | - Peter Ehlers
- Institute of Chemistry, Organic Chemistry, University of Rostock, Albert-Einstein-Str. 3 A, 18059, Rostock, Germany
| | - Peter Langer
- Institute of Chemistry, Organic Chemistry, University of Rostock, Albert-Einstein-Str. 3 A, 18059, Rostock, Germany
| | - Jan von Langermann
- Institute of Chemistry, Biocatalytic Synthesis Group, University of Rostock, Albert-Einstein-Str. 3 A, 18059, Rostock, Germany
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Xiao P, Pannecoucke X, Bouillon JP, Couve-Bonnaire S. Wonderful fusion of organofluorine chemistry and decarboxylation strategy. Chem Soc Rev 2021; 50:6094-6151. [PMID: 34027960 DOI: 10.1039/d1cs00216c] [Citation(s) in RCA: 61] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Decarboxylation strategy has been emerging as a powerful tool for the synthesis of fluorine-containing organic compounds that play important roles in various fields such as pharmaceuticals, agrochemicals, and materials science. Considerable progress in decarboxylation has been made over the past decade towards the construction of diverse valuable fluorinated fine chemicals for which the fluorinated part can be brought in two ways. The first way is described as the reaction of non-fluorinated carboxylic acids (and their derivatives) with fluorinating reagents, as well as fluorine-containing building blocks. The second way is dedicated to the exploration and the use of fluorine-containing carboxylic acids (and their derivatives) in decarboxylative transformations. This review aims to provide a comprehensive summary of the development and applications of decarboxylative radical, nucleophilic and cross-coupling strategies in organofluorine chemistry.
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Affiliation(s)
- Pan Xiao
- Normandie Univ, INSA Rouen, UNIROUEN, CNRS, COBRA (UMR 6014), 76000 Rouen, France.
| | - Xavier Pannecoucke
- Normandie Univ, INSA Rouen, UNIROUEN, CNRS, COBRA (UMR 6014), 76000 Rouen, France.
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