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Umaña CA, Henry JL, Saltzman CT, Sackett DL, Jenkins LM, Taylor RE. Linear (-)-Zampanolide: Flexibility in Conformation-Activity Relationships. ChemMedChem 2023; 18:e202300292. [PMID: 37552215 PMCID: PMC10615712 DOI: 10.1002/cmdc.202300292] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/20/2023] [Accepted: 08/01/2023] [Indexed: 08/09/2023]
Abstract
Through an understanding of the conformational preferences of the polyketide natural product (-)-zampanolide, and the structural motifs that control these preferences, we developed a linear zampanolide analogue that exhibits potent cytotoxicity against cancer cell lines. This discovery provides a set of three structural handles for further structure-activity relationship (SAR) studies of this potent microtubule-stabilizing agent. Moreover, it provides additional evidence of the complex relationship between ligand preorganization, conformational flexibility, and biological potency. In contrast to medicinal chemistry dogma, these results demonstrate that increased overall conformational flexibility is not necessarily detrimental to protein binding affinity and biological activity.
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Affiliation(s)
- Christian A Umaña
- Department of Chemistry and Biochemistry and the Warren Center for Drug Discovery, University of Notre Dame, Notre Dame, IN 46556-5670, USA
| | - Jeffrey L Henry
- Department of Chemistry and Biochemistry and the Warren Center for Drug Discovery, University of Notre Dame, Notre Dame, IN 46556-5670, USA
| | - Claire T Saltzman
- Department of Chemistry and Biochemistry and the Warren Center for Drug Discovery, University of Notre Dame, Notre Dame, IN 46556-5670, USA
| | - Dan L Sackett
- Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA
| | - Lisa M Jenkins
- Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA
| | - Richard E Taylor
- Department of Chemistry and Biochemistry and the Warren Center for Drug Discovery, University of Notre Dame, Notre Dame, IN 46556-5670, USA
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Li K, Gao S, Zha Z, Wang Z. Construction of chiral N, O-hemiaminals via a copper-catalyzed enantioselective Michael/ N-hemiacetalization cascade reaction. Org Biomol Chem 2023; 21:4404-4408. [PMID: 37191101 DOI: 10.1039/d3ob00542a] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
An efficient Michael/N-hemiacetalization cascade reaction of 5-aminoisoxazoles with β,γ-unsaturated α-ketoesters was developed under the catalysis of a chiral copper complex. A series of optically pure six-membered ring N,O-hemiaminals were obtained with excellent yields (up to 96% yield) and high enantioselectivities (up to 98% ee). The possible transition state was supported by DFT calculations and thereby the corresponding mechanism was proposed.
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Affiliation(s)
- Kuiliang Li
- Hefei National Laboratory for Physical Sciences at Microscale, CAS Key Laboratory of Soft Matter Chemistry & Center for Excellence in Molecular Synthesis of Chinese Academy of Sciences, School of Chemistry and Materials Science in University of Science and Technology of China, Hefei, Anhui 230026, P. R. China.
| | - Siyu Gao
- Hefei National Laboratory for Physical Sciences at Microscale, CAS Key Laboratory of Soft Matter Chemistry & Center for Excellence in Molecular Synthesis of Chinese Academy of Sciences, School of Chemistry and Materials Science in University of Science and Technology of China, Hefei, Anhui 230026, P. R. China.
| | - Zhenggen Zha
- Hefei National Laboratory for Physical Sciences at Microscale, CAS Key Laboratory of Soft Matter Chemistry & Center for Excellence in Molecular Synthesis of Chinese Academy of Sciences, School of Chemistry and Materials Science in University of Science and Technology of China, Hefei, Anhui 230026, P. R. China.
| | - Zhiyong Wang
- Hefei National Laboratory for Physical Sciences at Microscale, CAS Key Laboratory of Soft Matter Chemistry & Center for Excellence in Molecular Synthesis of Chinese Academy of Sciences, School of Chemistry and Materials Science in University of Science and Technology of China, Hefei, Anhui 230026, P. R. China.
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Bold CP, Gut M, Schürmann J, Lucena-Agell D, Gertsch J, Díaz JF, Altmann KH. Synthesis of Morpholine-Based Analogues of (-)-Zampanolide and Their Biological Activity. Chemistry 2021; 27:5936-5943. [PMID: 33078440 DOI: 10.1002/chem.202003996] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 10/17/2020] [Indexed: 12/23/2022]
Abstract
We describe the convergent synthesis of three prototypical examples of a new class of analogues of the complex, cytotoxic marine macrolide (-)-zampanolide that incorporate an embedded N-substituted morpholine moiety in place of the natural tetrahydropyran ring. The final construction of the macrolactone core was based on a high-yielding intramolecular HWE olefination, while the hemiaminal-linked side chain was elaborated through a stereoselective, BINAL-H-mediated addition of (Z,E)-sorbamide to a macrocyclic aldehyde precursor. The synthesis of the common functionalized morpholine building block involved two consecutive epoxide openings with tosylamide and the product of the first opening reaction, respectively, as nucleophiles. Of the three morpholino-zampanolides investigated, the N-acetyl and the N-benzoyl derivatives both exhibited nanomolar antiproliferative activity, thus being essentially equipotent with the natural product. In contrast, the activity of the N-tosyl derivative was significantly reduced.
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Affiliation(s)
- Christian Paul Bold
- Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH Zurich HCI H405, Vladimir-Prelog-Weg 4, 8093, Zürich, Switzerland
| | - Melanie Gut
- Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH Zurich HCI H405, Vladimir-Prelog-Weg 4, 8093, Zürich, Switzerland
| | - Jasmine Schürmann
- Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH Zurich HCI H405, Vladimir-Prelog-Weg 4, 8093, Zürich, Switzerland
| | - Daniel Lucena-Agell
- Centro de Investigaciones Biolόgicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040, Madrid, Spain
| | - Jürg Gertsch
- Department of Chemistry and Applied Biosciences, Institute of Biochemistry and Molecular Medicine, University of Bern, Bühlstrasse 28, 3012, Bern, Switzerland
| | - José Fernando Díaz
- Centro de Investigaciones Biolόgicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040, Madrid, Spain
| | - Karl-Heinz Altmann
- Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH Zurich HCI H405, Vladimir-Prelog-Weg 4, 8093, Zürich, Switzerland
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Bold CP, Klaus C, Pfeiffer B, Schürmann J, Lombardi R, Lucena-Agell D, Díaz JF, Altmann KH. Studies toward the Synthesis of an Oxazole-Based Analog of (-)-Zampanolide. Org Lett 2021; 23:2238-2242. [PMID: 33635661 DOI: 10.1021/acs.orglett.1c00378] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Studies are described toward the synthesis of an oxazole-based analog of (-)-zampanolide (2). Construction of (-)-dactylolide analog 22 was achieved via alcohol 5 and acid 4 through esterification and Horner-Wadsworth-Emmons (HWE)-based macrocyclization; however, attempts to attach (Z,E)-sorbamide to 22 proved unsuccessful. The C(8)-C(9) double bond of the macrocycle was prone to migration into conjugation with the oxazole ring, which may generally limit the usefulness of zampanolide analogs with aromatic moieties as tetrahydropyran replacements.
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Affiliation(s)
- Christian P Bold
- ETH Zürich, Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, Vladimir-Prelog-Weg 4, 8093 Zürich, Switzerland
| | - Cindy Klaus
- ETH Zürich, Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, Vladimir-Prelog-Weg 4, 8093 Zürich, Switzerland
| | - Bernhard Pfeiffer
- ETH Zürich, Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, Vladimir-Prelog-Weg 4, 8093 Zürich, Switzerland
| | - Jasmine Schürmann
- ETH Zürich, Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, Vladimir-Prelog-Weg 4, 8093 Zürich, Switzerland
| | - Rafael Lombardi
- ETH Zürich, Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, Vladimir-Prelog-Weg 4, 8093 Zürich, Switzerland
| | - Daniel Lucena-Agell
- Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
| | - J Fernando Díaz
- Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
| | - Karl-Heinz Altmann
- ETH Zürich, Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, Vladimir-Prelog-Weg 4, 8093 Zürich, Switzerland
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