1
|
Moghimi P, Sabet-Sarvestani H, Moghimi V, Norozi-Shad N, Szostak M. Single-atom molecular editing: transformative advances in carbocyclic and heterocyclic frameworks. Org Biomol Chem 2025; 23:3982-4005. [PMID: 40177717 DOI: 10.1039/d5ob00272a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2025]
Abstract
Single-atom editing has emerged as a transformative strategy in organic synthesis, enabling precise modification of carbocyclic and heterocyclic frameworks by selectively targeting single atoms. These frameworks are crucial backbones of pharmaceuticals, agrochemicals, and advanced materials, making this approach powerful for organic chemists. In drug discovery and natural product synthesis, single-atom editing diversifies molecular scaffolds and tailors molecular properties to enhance pharmacological activity. In heterocyclic synthesis, this approach enables controlled heteroatom substitution, addition or deletion in an unprecedented and highly selective manner compared to traditional methods. Recent advances in transition-metal catalysis, organocatalysis, photoredox catalysis, and heterocycle-to-heterocycle metamorphosis have expanded the versatility of single-atom editing, enabling the synthesis of various carbocyclic and heterocyclic compounds. Principally, this approach has been exploited to design new architectures that are not easily accessible by other methods and to establish major improvements in the synthesis of known scaffolds, providing more efficient and sustainable routes towards large-scale chemical synthesis. This review overviews recent advances, focusing on carbocyclic and heterocyclic frameworks, and is organized by key single-atom editing strategies, such as ring contractions, atom deletions, ring expansions, and atom insertions. The review highlights key transformations like Favorskii and Wolff rearrangements, alongside modern photochemical and transition-metal-catalyzed processes, to provide a broad overview of synthetic applications and inspire further advancements in targeted molecular edits.
Collapse
Affiliation(s)
- Parvin Moghimi
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Hossein Sabet-Sarvestani
- Department of Food Additives, Food Science and Technology Research Institute, Research Center for Iranian Academic Center for Education, Culture and Research (ACECR), Khorasan Razavi Branch, Mashhad, Iran
| | - Vahid Moghimi
- Department of Biology, Faculty of Science, Hakim Sabzevari University, Sabzevar, Iran
| | - Nazanin Norozi-Shad
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Michal Szostak
- Department of Chemistry, Rutgers University, Newark, NJ, USA.
| |
Collapse
|
2
|
Arnold M, Hammes J, Ong M, Mück-Lichtenfeld C, Wahl JM. Nitrogen Insertion via Asymmetric Condensation and Chirality Transfer: A Stereodivergent Entry to Cyanocyclopropanes. Angew Chem Int Ed Engl 2025:e202503056. [PMID: 40197844 DOI: 10.1002/anie.202503056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2025] [Revised: 03/28/2025] [Accepted: 04/04/2025] [Indexed: 04/10/2025]
Abstract
The condensation of prochiral cyclobutanones and diphenylphosphinyl hydroxylamine is achieved under Brønsted acid catalysis. Interestingly, the competing aza-Baeyer-Villiger reaction is completely suppressed and the axially chiral oxime esters can be isolated in excellent yield and selectivity (up to 96% yield, up to 97:3 er). Computational analysis highlights the crucial role of the Brønsted acid in facilitating a successful condensation. Building on the inherent reactivity of the corresponding oxime esters, a one-pot protocol toward cyanocyclopropanes was discovered, which establishes two consecutive stereocenters. This unusual ring contraction is triggered by strong base and permits an axial-to-point chirality transfer with good enantiospecificity (up to 98% es). Fine-tuning the reaction parameters enables stereodivergent access to both diastereomers of the cyanocyclopropanes, and the utility of this method is demonstrated through the formal synthesis of the drug tasimelteon.
Collapse
Affiliation(s)
- Marlene Arnold
- Department Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Jasmin Hammes
- Department Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Mike Ong
- Department Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, 55128, Mainz, Germany
| | | | - Johannes M Wahl
- Department Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, 55128, Mainz, Germany
| |
Collapse
|
3
|
Botlik BB, Weber M, Ruepp F, Kawanaka K, Finkelstein P, Morandi B. Streamlining the Synthesis of Pyridones through Oxidative Amination of Cyclopentenones. Angew Chem Int Ed Engl 2024; 63:e202408230. [PMID: 38934574 DOI: 10.1002/anie.202408230] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Revised: 06/12/2024] [Accepted: 06/18/2024] [Indexed: 06/28/2024]
Abstract
Herein we report the development of an oxidative amination process for the streamlined synthesis of pyridones from cyclopentenones. Cyclopentenone building blocks can undergo in situ silyl enol ether formation, followed by the introduction of a nitrogen atom into the carbon skeleton with successive aromatisation to yield pyridones. The reaction sequence is operationally simple, rapid, and carried out in one pot. The reaction proceeds under mild conditions, exhibits broad functional group tolerance, complete regioselectivity, and is well scalable. The developed method provides facile access to the synthesis of 15N-labelled targets, industrially relevant pyridone products and their derivatives in a fast and efficient way.
Collapse
Affiliation(s)
- Bence B Botlik
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir Prelog Weg 3, HCI, 8093, Zürich, Switzerland
| | - Micha Weber
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir Prelog Weg 3, HCI, 8093, Zürich, Switzerland
| | - Florian Ruepp
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir Prelog Weg 3, HCI, 8093, Zürich, Switzerland
| | - Kazuki Kawanaka
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir Prelog Weg 3, HCI, 8093, Zürich, Switzerland
| | - Patrick Finkelstein
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir Prelog Weg 3, HCI, 8093, Zürich, Switzerland
| | - Bill Morandi
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir Prelog Weg 3, HCI, 8093, Zürich, Switzerland
| |
Collapse
|
4
|
Wu Y, Inoue M, Sakakura S, Hyodo K. γ-Lactam synthesis from cyclobutanone via transoximation and the Beckmann rearrangement. Org Biomol Chem 2024; 22:4364-4368. [PMID: 38738449 DOI: 10.1039/d4ob00566j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/14/2024]
Abstract
This manuscript describes the synthesis of γ-lactam from the nitrogen insertion reaction of cyclobutanones using an oxime as an aminating reagent with a catalytic amount of Brønsted acid. This method was employed with a more stable oxime reagent, which is a precursor analog of hydroxylamine derivatives with explosive properties. The reaction was tolerated by various substituted cyclobutanones and less strained five- or six-membered ketones. The obtained γ-lactam products could be transformed into γ-aminobutyric acid derivatives via ring-opening hydrolysis. The reaction mechanism is discussed from the perspective of the isotope effect, etc.
Collapse
Affiliation(s)
- Yuhao Wu
- Department of Chemistry, Faculty of Science and Engineering, Kindai University, 3-4-1 Kowakae, Higashi-Osaka, Osaka, 577-8502, Japan.
| | - Masanori Inoue
- Department of Chemistry, Faculty of Science and Engineering, Kindai University, 3-4-1 Kowakae, Higashi-Osaka, Osaka, 577-8502, Japan.
| | - Shota Sakakura
- Department of Chemistry, Faculty of Science and Engineering, Kindai University, 3-4-1 Kowakae, Higashi-Osaka, Osaka, 577-8502, Japan.
| | - Kengo Hyodo
- Department of Chemistry, Faculty of Science and Engineering, Kindai University, 3-4-1 Kowakae, Higashi-Osaka, Osaka, 577-8502, Japan.
| |
Collapse
|
5
|
Gunasekera S, Pryyma A, Jung J, Greenwood R, Patrick BO, Perrin DM. Diphenylphosphinylhydroxylamine (DPPH) Affords Late-Stage S-imination to access free-NH Sulfilimines and Sulfoximines. Angew Chem Int Ed Engl 2024; 63:e202314906. [PMID: 38289976 DOI: 10.1002/anie.202314906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 01/29/2024] [Accepted: 01/30/2024] [Indexed: 02/01/2024]
Abstract
Sulfilimines, as potential aza-isosteres of sulfoxides, are valued as building blocks, auxiliaries, ligands, bioconjugation handles, and as precursors to versatile S(VI) scaffolds including sulfoximines and sulfondiimines. Here, we report a thioether imination methodology that exploits O-(diphenylphosphinyl)hydroxyl amine (DPPH). Under mild, metal-free, and biomolecule-compatible conditions, DPPH enables late-stage S-imination on peptides, natural products, and a clinically trialled drug, and shows both excellent chemoselectivity and broad functional group tolerance. This methodological report is extended to an efficient and high-yielding one-pot reaction for accessing free-NH sulfoximines with diverse substrates including ones of potential clinical importance. In the presence of a rhodium catalyst, sulfoxides are S-iminated in higher yields to afford free-NH sulfoximines. S-imination was validated on an oxidatively delicate amatoxin to give sulfilimine and sulfoximine congeners. Interestingly, these new sulfilimine and sulfoximine-amatoxins show cytotoxicity. This method is further extended to create sulfilimine and sulfoximine-Fulvestrant and buthionine analogues.
Collapse
Affiliation(s)
- Shanal Gunasekera
- Chemistry Department, University of British Columbia, 2036 Main Mall, V6T 1Z1, Vancouver, B.C., Canada
| | - Alla Pryyma
- Chemistry Department, University of British Columbia, 2036 Main Mall, V6T 1Z1, Vancouver, B.C., Canada
| | - Jimin Jung
- Chemistry Department, University of British Columbia, 2036 Main Mall, V6T 1Z1, Vancouver, B.C., Canada
| | - Rebekah Greenwood
- Chemistry Department, University of British Columbia, 2036 Main Mall, V6T 1Z1, Vancouver, B.C., Canada
| | - Brian O Patrick
- Chemistry Department, University of British Columbia, 2036 Main Mall, V6T 1Z1, Vancouver, B.C., Canada
| | - David M Perrin
- Chemistry Department, University of British Columbia, 2036 Main Mall, V6T 1Z1, Vancouver, B.C., Canada
| |
Collapse
|
6
|
Huo T, Zhao X, Cheng Z, Wei J, Zhu M, Dou X, Jiao N. Late-stage modification of bioactive compounds: Improving druggability through efficient molecular editing. Acta Pharm Sin B 2024; 14:1030-1076. [PMID: 38487004 PMCID: PMC10935128 DOI: 10.1016/j.apsb.2023.11.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 10/14/2023] [Accepted: 11/13/2023] [Indexed: 03/17/2024] Open
Abstract
Synthetic chemistry plays an indispensable role in drug discovery, contributing to hit compounds identification, lead compounds optimization, candidate drugs preparation, and so on. As Nobel Prize laureate James Black emphasized, "the most fruitful basis for the discovery of a new drug is to start with an old drug"1. Late-stage modification or functionalization of drugs, natural products and bioactive compounds have garnered significant interest due to its ability to introduce diverse elements into bioactive compounds promptly. Such modifications alter the chemical space and physiochemical properties of these compounds, ultimately influencing their potency and druggability. To enrich a toolbox of chemical modification methods for drug discovery, this review focuses on the incorporation of halogen, oxygen, and nitrogen-the ubiquitous elements in pharmacophore components of the marketed drugs-through late-stage modification in recent two decades, and discusses the state and challenges faced in these fields. We also emphasize that increasing cooperation between chemists and pharmacists may be conducive to the rapid discovery of new activities of the functionalized molecules. Ultimately, we hope this review would serve as a valuable resource, facilitating the application of late-stage modification in the construction of novel molecules and inspiring innovative concepts for designing and building new drugs.
Collapse
Affiliation(s)
- Tongyu Huo
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Xinyi Zhao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Zengrui Cheng
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Jialiang Wei
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
- Changping Laboratory, Beijing 102206, China
| | - Minghui Zhu
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Xiaodong Dou
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Ning Jiao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
- Changping Laboratory, Beijing 102206, China
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, East China Normal University, Shanghai 200062, China
| |
Collapse
|
7
|
Martelli LSR, da Silva OAM, Zukerman-Schpector J, Corrêa AG. One-pot synthesis of γ-lactams from ketoaziridines. Org Biomol Chem 2023; 21:9128-9132. [PMID: 37966723 DOI: 10.1039/d3ob01568h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2023]
Abstract
The remarkable biological activities of γ-lactams have stimulated the search for efficient synthetic methods to achieve these scaffolds. In this work, we have developed a simple one-pot diastereoselective synthesis of new γ-lactams from ketoaziridines with moderate to good yields via the Horner-Wadsworth-Emmons reaction, followed by an intramolecular ester-aziridine cyclization and its opening in situ. Preliminary efforts towards an enantioselective version of this method are also reported.
Collapse
Affiliation(s)
- Lorena S R Martelli
- Centre of Excellence for Research in Sustainable Chemistry, Department of Chemistry, Federal University of São Carlos, 13565-905 São Carlos - SP, Brazil
| | - Otavio A M da Silva
- Centre of Excellence for Research in Sustainable Chemistry, Department of Chemistry, Federal University of São Carlos, 13565-905 São Carlos - SP, Brazil
| | | | - Arlene G Corrêa
- Director of the Centre of Excellence for Research in Sustainable Chemistry, Department of Chemistry, Federal University of São Carlos, 13565-905 São Carlos - SP, Brazil.
| |
Collapse
|
8
|
Sandvoß A, Wahl JM. From Cycloalkanols to Heterocycles via Nitrogen Insertion. Org Lett 2023; 25:5795-5799. [PMID: 37503963 DOI: 10.1021/acs.orglett.3c02048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
Abstract
A variety of cyclic alcohols are found to undergo nitrogen insertion by subjection to O-mesitylsulfonylhydroxylamine. Critical to a successful process is the use of fluorinated alcoholic solvents, which ensures sufficient substrate activation to allow engagement with the ambiphilic aminating agent. This transition-metal-free nitrogen insertion provides access to a variety of medicinally relevant heterocycles such as pyrrolidenes, quinolines, and benzazepines (24 examples). Furthermore, combination with a photochemical Norrish-Yang-type cyclization allows an unprecedented access to indoles from ortho-substituted acetophenones.
Collapse
Affiliation(s)
- Alexander Sandvoß
- Department Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Johannes M Wahl
- Department Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, 55128 Mainz, Germany
| |
Collapse
|