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Zhang M, Deng Y, Zhou Q, Gao J, Zhang D, Pan X. Advancing micro-nano supramolecular assembly mechanisms of natural organic matter by machine learning for unveiling environmental geochemical processes. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2025; 27:24-45. [PMID: 39745028 DOI: 10.1039/d4em00662c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2025]
Abstract
The nano-self-assembly of natural organic matter (NOM) profoundly influences the occurrence and fate of NOM and pollutants in large-scale complex environments. Machine learning (ML) offers a promising and robust tool for interpreting and predicting the processes, structures and environmental effects of NOM self-assembly. This review seeks to provide a tutorial-like compilation of data source determination, algorithm selection, model construction, interpretability analyses, applications and challenges for big-data-based ML aiming at elucidating NOM self-assembly mechanisms in environments. The results from advanced nano-submicron-scale spatial chemical analytical technologies are suggested as input data which provide the combined information of molecular interactions and structural visualization. The existing ML algorithms need to handle multi-scale and multi-modal data, necessitating the development of new algorithmic frameworks. Interpretable supervised models are crucial owing to their strong capacity of quantifying the structure-property-effect relationships and bridging the gap between simply data-driven ML and complicated NOM assembly practice. Then, the necessity and challenges are discussed and emphasized on adopting ML to understand the geochemical behaviors and bioavailability of pollutants as well as the elemental cycling processes in environments resulting from the NOM self-assembly patterns. Finally, a research framework integrating ML, experiments and theoretical simulation is proposed for comprehensively and efficiently understanding the NOM self-assembly-involved environmental issues.
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Affiliation(s)
- Ming Zhang
- College of Geoinformatics, Zhejiang University of Technology, Hangzhou, 310014, P. R. China.
| | - Yihui Deng
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, P. R. China.
| | - Qianwei Zhou
- College of Computer Science and Technology, Zhejiang University of Technology, Hangzhou 310023, P. R. China
| | - Jing Gao
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, P. R. China.
| | - Daoyong Zhang
- College of Geoinformatics, Zhejiang University of Technology, Hangzhou, 310014, P. R. China.
| | - Xiangliang Pan
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, P. R. China.
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Bagherpour S, Pérez-García L. Recent advances on nanomaterial-based glutathione sensors. J Mater Chem B 2024; 12:8285-8309. [PMID: 39081041 DOI: 10.1039/d4tb01114g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/29/2024]
Abstract
Glutathione (GSH) is one of the most common thiol-containing molecules discovered in biological systems, and it plays an important role in many cellular functions, where changes in physiological glutathione levels contribute to the progress of a variety of diseases. Molecular imaging employing fluorescent probes is thought to be a sensitive technique for online fluorescence detection of GSH. Although various molecular probes for (intracellular) GSH sensing have been reported, some aspects remain unanswered, such as quantitative intracellular analysis, dynamic monitoring, and compatibility with biological environment. Some of these drawbacks can be overcome by sensors based on nanostructured materials, that have attracted considerable attention owing to their exceptional properties, including a large surface area, heightened electro-catalytic activity, and robust mechanical resilience, for which they have become integral components in the development of highly sensitive chemo- and biosensors. Additionally, engineered nanomaterials have demonstrated significant promise in enhancing the precision of disease diagnosis and refining treatment specificity. The aim of this review is to investigate recent advancements in fabricated nanomaterials tailored for detecting GSH. Specifically, it examines various material categories, encompassing carbon, polymeric, quantum dots (QDs), covalent organic frameworks (COFs), metal-organic frameworks (MOFs), metal-based, and silicon-based nanomaterials, applied in the fabrication of chemo- and biosensors. The fabrication of nano-biosensors, mechanisms, and methodologies employed for GSH detection utilizing these fabricated nanomaterials will also be elucidated. Remarkably, there is a noticeable absence of existing reviews specifically dedicated to the nanomaterials for GSH detection since they are not comprehensive in the case of nano-fabrication, mechanisms and methodologies of detection, as well as applications in various biological environments. This research gap presents an opportune moment to thoroughly assess the potential of nanomaterial-based approaches in advancing GSH detection methodologies.
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Affiliation(s)
- Saman Bagherpour
- Departament de Farmacologia, Toxicologia i Química Terapèutica, Universitat de Barcelona, Av. Joan XXIII 27-31, Barcelona, 08028, Spain.
- Institut de Nanociència i Nanotecnologia IN2UB, Universitat de Barcelona, Barcelona, 08028, Spain
| | - Lluïsa Pérez-García
- Departament de Farmacologia, Toxicologia i Química Terapèutica, Universitat de Barcelona, Av. Joan XXIII 27-31, Barcelona, 08028, Spain.
- Institut de Nanociència i Nanotecnologia IN2UB, Universitat de Barcelona, Barcelona, 08028, Spain
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Kaimal R, Dube A, Souwaileh AA, Wu JJ, Anandan S. A copper metal-organic framework-based electrochemical sensor for identification of glutathione in pharmaceutical samples. Analyst 2024; 149:947-957. [PMID: 38197180 DOI: 10.1039/d3an01714a] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2024]
Abstract
The construction of a new electrochemical sensing platform based on a copper metal-organic framework (Cu-MOF) heterostructure is described in this paper. Drop-casting Cu-MOF suspension onto the electrode surface primed the sensor for glutathione detection. The composition and morphology of the Cu-MOF heterostructure were investigated using scanning electron microscopy (SEM), high-resolution transmission electron microscopy (HR-TEM), X-ray diffraction spectroscopy (XRD), Fourier transform infrared spectroscopy (FT-IR), and UV-visible spectroscopy. The Cu-MOF heterostructure can identify glutathione (GSH) with an enhanced sensitivity of 0.0437 μA μM-1 at the detection limit (LOD; 0.1 ± 0.005 μM) and a large dynamic range of 0.1-20 μM. Boosting the conductivity and surface area enhances electron transport and promotes redox processes. The constructed sensors were also adequately selective against interference from other contaminants in a similar potential window. Furthermore, the Cu-MOF heterostructure has outstanding selectivity, long-term stability, and repeatability, and the given sensors have demonstrated their capacity to detect GSH with high accuracy (recovery range = 98.2-100.8%) in pharmaceutical samples.
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Affiliation(s)
- Reshma Kaimal
- Nanomaterials & Solar Energy Conversion Lab, Department of Chemistry, National Institute of Technology, Tiruchirappalli-620015, India.
| | - Aashutosh Dube
- Nanomaterials & Solar Energy Conversion Lab, Department of Chemistry, National Institute of Technology, Tiruchirappalli-620015, India.
| | - Abdullah Al Souwaileh
- Department of Chemistry, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Jerry J Wu
- Department of Environmental Engineering & Science, Feng Chia University, Taichung-407, Taiwan
| | - Sambandam Anandan
- Nanomaterials & Solar Energy Conversion Lab, Department of Chemistry, National Institute of Technology, Tiruchirappalli-620015, India.
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Paul P, Nair R, Mahajan S, Gupta U, Aalhate M, Maji I, Singh PK. Traversing the diverse avenues of exopolysaccharides-based nanocarriers in the management of cancer. Carbohydr Polym 2023; 312:120821. [PMID: 37059549 DOI: 10.1016/j.carbpol.2023.120821] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 03/13/2023] [Accepted: 03/14/2023] [Indexed: 04/16/2023]
Abstract
Exopolysaccharides are unique polymers generated by living organisms such as algae, fungi and bacteria to protect them from environmental factors. After a fermentative process, these polymers are extracted from the medium culture. Exopolysaccharides have been explored for their anti-viral, anti-bacterial, anti-tumor, and immunomodulatory effects. Specifically, they have acquired massive attention in novel drug delivery strategies owing to their indispensable properties like biocompatibility, biodegradability, and lack of irritation. Exopolysaccharides such as dextran, alginate, hyaluronic acid, pullulan, xanthan gum, gellan gum, levan, curdlan, cellulose, chitosan, mauran, and schizophyllan exhibited excellent drug carrier properties. Specific exopolysaccharides, such as levan, chitosan, and curdlan, have demonstrated significant antitumor activity. Moreover, chitosan, hyaluronic acid and pullulan can be employed as targeting ligands decorated on nanoplatforms for effective active tumor targeting. This review shields light on the classification, unique characteristics, antitumor activities and nanocarrier properties of exopolysaccharides. In addition, in vitro human cell line experiments and preclinical studies associated with exopolysaccharide-based nanocarriers have also been highlighted.
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Affiliation(s)
- Priti Paul
- Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research, Hyderabad 500037, India
| | - Rahul Nair
- Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research, Hyderabad 500037, India
| | - Srushti Mahajan
- Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research, Hyderabad 500037, India
| | - Ujala Gupta
- Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research, Hyderabad 500037, India
| | - Mayur Aalhate
- Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research, Hyderabad 500037, India
| | - Indrani Maji
- Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research, Hyderabad 500037, India
| | - Pankaj Kumar Singh
- Department of Pharmaceutics, National Institute of Pharmaceutical Education and Research, Hyderabad 500037, India.
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Xiong J, Liu DM, Huang YY. Exopolysaccharides from Lactiplantibacillus plantarum: isolation, purification, structure–function relationship, and application. Eur Food Res Technol 2023. [DOI: 10.1007/s00217-023-04237-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
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Fan Y, Wang X, Huang H, Yang Y, Guo J, Luo S, Zhao M, Li Y. A visual ratiometric fluorescence sensor for glutathione response based on MnO 2 nanowires as an oxidant, quencher and recognition unit. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2023; 15:419-429. [PMID: 36606523 DOI: 10.1039/d2ay01812h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
As the "mother of antioxidants", glutathione (GSH) plays an important role in physiological functions. Rapid and accurate monitoring of GSH is of great significance for medicinal chemistry, food chemistry, and clinical medicine. We herein report a visual ratiometric fluorescence sensor based on MnO2 nanowires (MnO2 NWs) as an oxidant, quencher and recognition unit for the determination of GSH. The powerful ratiometric fluorescent probe was constructed by mixing thiamine (VB1) and rhodamine B (RhB) with the help of MnO2 NWs. MnO2 NWs could not only effectively quench the fluorescence of RhB due to the inner filter effect (IFE), but also oxidized non-fluorescent VB1 to blue fluorescent thiochrome (oxVB1). Upon interaction with GSH, the quenched RhB fluorescence could be rapidly restored through decomposition of MnO2 NWs into Mn2+, while the oxVB1 fluorescence decreased, showing an apparent color change from blue to red. The concentration of GSH was proportional to the ratio of fluorescence intensities of RhB and oxVB1, and the detection linear range was 1 to 10 000 μM with comparable selectivity. This ratio fluorescence sensor was successfully applied to GSH determination in whitening capsules and glutathione tablets with satisfactory results, and the sensor may be a potentially powerful tool for the detection of GSH.
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Affiliation(s)
- Yu Fan
- Chongqing Key Laboratory of Sichuan-Chongqing Co-Construction for Diagnosis and Treatment of Infectious Diseases Integrated Traditional Chinese and Western Medicine, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.
| | - Xin Wang
- Chongqing Key Laboratory of Sichuan-Chongqing Co-Construction for Diagnosis and Treatment of Infectious Diseases Integrated Traditional Chinese and Western Medicine, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.
| | - He Huang
- Chongqing Key Laboratory of Sichuan-Chongqing Co-Construction for Diagnosis and Treatment of Infectious Diseases Integrated Traditional Chinese and Western Medicine, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.
| | - Yumeng Yang
- Chongqing Key Laboratory of Sichuan-Chongqing Co-Construction for Diagnosis and Treatment of Infectious Diseases Integrated Traditional Chinese and Western Medicine, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.
| | - Jinlin Guo
- Chongqing Key Laboratory of Sichuan-Chongqing Co-Construction for Diagnosis and Treatment of Infectious Diseases Integrated Traditional Chinese and Western Medicine, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.
- State Key Laboratory of Southwestern Chinese Medicine Resources, School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China
| | - Shajie Luo
- Chongqing Key Laboratory of Sichuan-Chongqing Co-Construction for Diagnosis and Treatment of Infectious Diseases Integrated Traditional Chinese and Western Medicine, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.
| | - Meilian Zhao
- School of Public Health, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.
| | - Yang Li
- School of Public Health, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.
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Li C, Shi X, Zhang X. Clustering-Triggered Emission of EPS-605 Nanoparticles and Their Application in Biosensing. Polymers (Basel) 2022; 14:polym14194050. [PMID: 36235999 PMCID: PMC9571269 DOI: 10.3390/polym14194050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Revised: 09/22/2022] [Accepted: 09/23/2022] [Indexed: 11/16/2022] Open
Abstract
Natural carbohydrates with intrinsic luminescent properties have drawn increasing attention thanks to their fundamental importance and promising applications. To expand the range of natural nonconventional biomacromolecule luminogens and to gain deep insights into their emission mechanism, we prepared EPS-605, a naturally occurring spherical nanoparticle based on negatively charged exopolysaccharides (EPS), and studied its emission behavior. It was found that EPS-605 was highly emissive in the aggregate state, such as powder and film. Furthermore, EPS-605 aqueous solutions exhibited concentration-enhanced emission characteristics. According to fluorescence spectra and confocal images, the fluorescence phenomenon of EPS-605 was not affected by the pH value and the carbon sources. The emission behavior of EPS-605 was attributed to the clustering-triggered emission (CTE) mechanism. Moreover, EPS-605 was successfully utilized for Fe3+ detection since its fluorescence could be selectively quenched by Fe3+. It could be used to detect Fe3+ with a low limit of detection (0.06 μM) and a wide detection range from 0.05 to 250 μM. Overall, these findings not only benefit the exploitation of EPS-based nonconventional biomacromolecule luminogens, but also reveal the potential applications of EPS-605 in biosensing/bioimaging, anticounterfeiting, and encryption owing to its excellent biocompatibility, environmental friendliness, and intrinsic photoluminescence property.
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Affiliation(s)
- Chengcheng Li
- College of Light Industry and Food Engineering, Utilization of Forest Resources, International Innovation Center for Forest Chemicals and Materials, Jiangsu Co-Innovation Center for Efficient Processing, Nanjing Forestry University, Nanjing 210037, China
| | - Xiaotong Shi
- College of Light Industry and Food Engineering, Utilization of Forest Resources, International Innovation Center for Forest Chemicals and Materials, Jiangsu Co-Innovation Center for Efficient Processing, Nanjing Forestry University, Nanjing 210037, China
| | - Xiaodong Zhang
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
- Correspondence:
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Malik R, Joshi N, Tomer VK. Functional graphitic carbon (IV) nitride: A versatile sensing material. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2022.214611] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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Wang T, Jiao Y, He M, Ouyang W, Lin C, Liu X, Xie H. Deep insight into the Sb(III) and Sb(V) removal mechanism by Fe-Cu-chitosan material. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 303:119160. [PMID: 35304178 DOI: 10.1016/j.envpol.2022.119160] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 03/08/2022] [Accepted: 03/14/2022] [Indexed: 06/14/2023]
Abstract
Currently, alleviating antimony (Sb) contamination in aqueous solutions is crucial for restoring and recovering ecological and environmental health. Due to its toxicity, bioaccumulation and mobile characteristics, developing an efficient technique for antimony decontamination is imperative. Herein, we prepared a Fe-Cu-chitosan (FCC) composite by a one-step coprecipitation method, in which nanoscale Fe/Cu acts as the active sites and the whole structure is exhibited as porous microscale particles. A Fe/Cu proportion of 2/1 (FCC-2/1) was determined to be the optimum proportion for antimony adsorption, specifically 34.5 mg g-1 for Sb(III) and 26.8 mg g-1 for Sb(V) (initial concentration: 5.0 mg L-1). Spectral characterization, batch experiments and density functional theory (DFT) simulations were applied to determine the adsorption mechanism, in which surface hydroxyls (-OH) were responsible for antimony complexion and Fe-Cu coupling was a major contributor to adsorption enhancement. According to kinetic analysis, Cu provided an electrostatic attraction during the adsorption process, which facilitated the transportation of antimony molecules to the material interface. In the meantime, the FCC electronic structure was modified due to the optimization of the Fe-Cu interface coupling. Based on the Mullikan net charge, the intrinsic Fe-O-Cu bond might favor interfacial electronic redistribution. When the antimony molecule contacted the adsorption interface, the electrons transferred swiftly as Fe/Cu 3d and O 2p orbital hybridization occurred, thus inducing a stabilizing effect. This work may offer a new perspective for binary oxide construction and its adsorption mechanism analysis.
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Affiliation(s)
- Tianning Wang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875, China
| | - Yonghong Jiao
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875, China
| | - Mengchang He
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875, China
| | - Wei Ouyang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875, China
| | - Chunye Lin
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875, China
| | - Xitao Liu
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875, China
| | - Haijiao Xie
- Hangzhou Yanqu Information Technology Co., Ltd., No. 712 Wen'er West Road, Xihu District, Hangzhou, 310003, China
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Isolation and Optimization of Culture Conditions of a Bioflocculant-Producing Fungi from Kombucha Tea SCOBY. MICROBIOLOGY RESEARCH 2021. [DOI: 10.3390/microbiolres12040070] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Biolocculants are gaining attention in research due to their environmental friendliness and innocuousness to human in comparison to the conventional flocculants. The present study aimed to investigate the ability of fungi from Kombucha tea SCOBY to produce effective bioflocculant in bulk. A 16S rRNA gene sequence analysis was utilized to identify the isolate. The medium composition (carbon and nitrogen sources) and culture conditions (inoculum size, temperature, shaking speed, pH, and time) were optimized using one-factor-at-a-time method. The functional groups, morphology, and crystallinity of the bioflocculant were evaluated using Fourier transform infrared (FT-IR), scan electron microscope (SEM) and X-ray diffractometry (XRD). The fungus was found to be Pichia kudriavzevii MH545928.1. It produced a bioflocculant with flocculating activity of 99.1% under optimum conditions; 1% (v/v) inoculum size, glucose and peptone as nutrient sources, 35 °C, pH 7 and the shaking speed of 140 rpm for 60 h. A cumulus-like structure was revealed by SEM; FT-IR displayed the presence of hydroxyl, carboxyl, amine, and thiocynates. The XRD analysis demonstrated the bioflocculant to have big particles with diffraction peaks at 10° and 40° indicating its crystallinity. Based on the obtained results, P. kudriavzevii MH545928.1 has potential industrial applicability as a bioflocculant producer.
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