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Debnath A, Mitra S, Ghosh S, Sen R. Understanding microbial biomineralization at the molecular level: recent advances. World J Microbiol Biotechnol 2024; 40:320. [PMID: 39279013 DOI: 10.1007/s11274-024-04132-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Accepted: 09/06/2024] [Indexed: 09/18/2024]
Abstract
Microbial biomineralization is a phenomenon involving deposition of inorganic minerals inside or around microbial cells as a direct consequence of biogeochemical cycling. The microbial metabolic processes often create environmental conditions conducive for the precipitation of silicate, carbonate or phosphate, ferrate forms of ubiquitous inorganic ions. Till date the fundamental mechanisms underpinning two of the major types of microbial biomineralization such as, microbially controlled and microbially induced remains poorly understood. While microbially-controlled mineralization (MCM) depends entirely on the genetic makeup of the cell, microbially-induced mineralization (MIM) is dependent on factors such as cell morphology, cell surface structures and extracellular polymeric substances (EPS). In recent years, the organic template-mediated nucleation of inorganic minerals has been considered as an underlying mechanism based on the principles of solid-state bioinorganic chemistry. The present review thus attempts to provide a comprehensive and critical overview on the recent progress in holistic understanding of both MCM and MIM, which involves, organic-inorganic biomolecular interactions that lead to template formation, biomineral nucleation and crystallization. Also, the operation of specific metabolic pathways and molecular operons in directing microbial biomineralization have been discussed. Unravelling these molecular mechanisms of biomineralization can help in the biomimetic synthesis of minerals for potential therapeutic applications, and facilitating the engineering of microorganisms for commercial production of biominerals.
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Affiliation(s)
- Ankita Debnath
- Department of Bioscience and Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India
| | - Sayak Mitra
- Department of Bioscience and Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India
| | - Supratit Ghosh
- Department of Bioscience and Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India
| | - Ramkrishna Sen
- Department of Bioscience and Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India.
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Zeng G, Wang Z, Tian G, Xia L, Zhang Y. Multilevel Micronanoscale Texture Effects on Fly Wing Membrane-Water Droplet Interaction. ACS APPLIED MATERIALS & INTERFACES 2024; 16:17007-17015. [PMID: 38528767 DOI: 10.1021/acsami.4c00275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
The wettable surface or nonwettable surface that is derived from a multilevel micronanoscale structure is abundant in nature and biomimetic commodities. Those hoverflies with the seta-coated wing membrane detached from impacting free-falling raindrops were observed in static states. A hoverfly wing membrane with well-ordered setae was identified as a robust nonwettable surface, and the static water contact angle θ on the wing membrane at the microscopic scale is 136.84 ± 0.98°. Hoverfly wing membrane-water droplet interaction with the actual truth and the theoretical models was discussed and indicated that the theoretical calculation might not state the actual situation, arising from the membrane or seta-drop-bubble interaction and those multilevel micronanoscale structure characteristics on the wing membrane. Detailed investigation on nonwettable surface-wettable surface transformation with surface CaCO3 accumulation in a carbonization reaction and the characteristic transformation toward the hoverfly wing membrane with the multilevel micronanoscale structure was carried out. Then, the CaCO3 accumulation on PDMS texture films was carried out and the static water contact angle θ was tested. Those observations offer ideas to fabricate artificial films with a multilevel micronanoscale structure that could obtain some characteristics, i.e., nonwettable surface-wettable surface transformation.
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Affiliation(s)
- Gaofei Zeng
- Department of Inorganic Materials, School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
| | - Zhou Wang
- Department of Inorganic Materials, School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
| | - Guangjian Tian
- Department of Inorganic Materials, School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
| | - Lu Xia
- Center for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan 410078, China
| | - Yi Zhang
- Department of Inorganic Materials, School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
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Lyu J, Li F, Long H, Zhu X, Fu N, Guo Z, Zhang W. Bacterial templated carbonate mineralization: insights from concave-type crystals induced by Curvibacter lanceolatus strain HJ-1. RSC Adv 2024; 14:353-363. [PMID: 38173589 PMCID: PMC10758759 DOI: 10.1039/d3ra06803j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 12/11/2023] [Indexed: 01/05/2024] Open
Abstract
The elucidation of carbonate crystal growth mechanisms contributes to a deeper comprehension of microbial-induced carbonate precipitation processes. In this research, the Curvibacter lanceolatus HJ-1 strain, well-known for its proficiency in inducing carbonate mineralization, was employed to trigger the formation of concave-type carbonate minerals. The study meticulously tracked the temporal alterations in the culture solution and conducted comprehensive analyses of the precipitated minerals' mineralogy and morphology using advanced techniques such as X-ray diffraction, scanning electron microscopy, focused ion beam, and transmission electron microscopy. The findings unequivocally demonstrate that concave-type carbonate minerals are meticulously templated by bacterial biofilms and employ calcified bacteria as their fundamental structural components. The precise morphological evolution pathway can be delineated as follows: initiation with the formation of bacterial biofilms, followed by the aggregation of calcified bacterial clusters, ultimately leading to the emergence of concave-type minerals characterized by disc-shaped, sunflower-shaped, and spherical morphologies.
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Affiliation(s)
- Jiejie Lyu
- Department of Geography, Fuyang Normal University China
- College of Resource and Environment, Nanjing Agricultural University China
| | - Fuchun Li
- College of Resource and Environment, Nanjing Agricultural University China
| | - Haoran Long
- Department of Geography, Fuyang Normal University China
| | - Xinru Zhu
- Department of Geography, Fuyang Normal University China
| | - Nan Fu
- Department of Geography, Fuyang Normal University China
| | - Ziqi Guo
- College of Resource and Environment, Nanjing Agricultural University China
| | - Weiqing Zhang
- College of Resource and Environment, Nanjing Agricultural University China
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Debnath A, Hazra C, Sen R. Insight into biomolecular interaction-based non-classical crystallization of bacterial biocement. Appl Microbiol Biotechnol 2023; 107:6683-6701. [PMID: 37668700 DOI: 10.1007/s00253-023-12736-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 08/03/2023] [Accepted: 08/20/2023] [Indexed: 09/06/2023]
Abstract
In an attempt to draw a correlation between calcium carbonate (CaCO3) precipitation and biomacromolecules such as extracellular polymeric substances and enzyme activity in biomineralizing microbe, this report aims to elucidate the ureolytic and ammonification route in Paenibacillus alkaliterrae to explore the possible role of organic biomolecule(s) present on cell surface in mediating nucleation and crystallization of biogenic CaCO3. After 168 h of biomineralization in ureolysis and ammonification, 2.2 g/l and 0.87 g/l of CaCO3 precipitates were obtained, respectively. The highest carbonic anhydrase activity (31.8 µmoles/min/ml) was evidenced in ammonification as opposed to ureolysis (24.8 µmoles/min/ml). Highest urease activity reached up to 9.26 µmoles/min/ml in ureolytic pathway. Extracellular polymeric substances such as polysaccharides and proteins were found to have a vital role not only in the nucleation and crystal growth but also in addition direct polymorphic fate of CaCO3 nanoparticles. EPS production was higher during ammonification (3.1 mg/ml) than in ureolysis (0.72 mg/ml). CaCO3 nanoparticle-associated proteins were found to be 0.82 mg/ml in ureolysis and 0.56 mg/ml in ammonification. After 30 days of biomineralization, all the polymorphic forms stabilized to calcite in ureolysis but in ammonification vaterite predominated. In our study, we showed that organic template-mediated prokaryotic biomineralization follows the non-classical nucleation and varying proportions of these organic components causes selective polymorphism of CaCO3 nanoparticles. Overall, the findings are expected to further the fundamental understanding of enzymes, EPS-driven non-classical nucleation of CaCO3, and we foresee the design of fit-for-purpose futuristic biominerals arising from such renewed understanding of biomineralization. KEY POINTS: • Organic-inorganic interface of cell surface promote crystallization of biominerals • Carbohydrate and proteins in the interface results selective polymorphism of CaCO3 • Calcite stabilized at 30 days in ureolysis, vaterite-calcite mix in ammonification.
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Affiliation(s)
- Ankita Debnath
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India
| | - Chinmay Hazra
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India
| | - Ramkrishna Sen
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India.
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Niu YQ, Liu JH, Aymonier C, Fermani S, Kralj D, Falini G, Zhou CH. Calcium carbonate: controlled synthesis, surface functionalization, and nanostructured materials. Chem Soc Rev 2022; 51:7883-7943. [PMID: 35993776 DOI: 10.1039/d1cs00519g] [Citation(s) in RCA: 73] [Impact Index Per Article: 24.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Calcium carbonate (CaCO3) is an important inorganic mineral in biological and geological systems. Traditionally, it is widely used in plastics, papermaking, ink, building materials, textiles, cosmetics, and food. Over the last decade, there has been rapid development in the controlled synthesis and surface modification of CaCO3, the stabilization of amorphous CaCO3 (ACC), and CaCO3-based nanostructured materials. In this review, the controlled synthesis of CaCO3 is first examined, including Ca2+-CO32- systems, solid-liquid-gas carbonation, water-in-oil reverse emulsions, and biomineralization. Advancing insights into the nucleation and crystallization of CaCO3 have led to the development of efficient routes towards the controlled synthesis of CaCO3 with specific sizes, morphologies, and polymorphs. Recently-developed surface modification methods of CaCO3 include organic and inorganic modifications, as well as intensified surface reactions. The resultant CaCO3 can then be further engineered via template-induced biomineralization and layer-by-layer assembly into porous, hollow, or core-shell organic-inorganic nanocomposites. The introduction of CaCO3 into nanostructured materials has led to a significant improvement in the mechanical, optical, magnetic, and catalytic properties of such materials, with the resultant CaCO3-based nanostructured materials showing great potential for use in biomaterials and biomedicine, environmental remediation, and energy production and storage. The influences that the preparation conditions and additives have on ACC preparation and stabilization are also discussed. Studies indicate that ACC can be used to construct environmentally-friendly hybrid films, supramolecular hydrogels, and drug vehicles. Finally, the existing challenges and future directions of the controlled synthesis and functionalization of CaCO3 and its expanding applications are highlighted.
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Affiliation(s)
- Yu-Qin Niu
- Research Group for Advanced Materials & Sustainable Catalysis (AMSC), State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou 310032, China. .,Qing Yang Institute for Industrial Minerals, You Hua, Qing Yang, Chi Zhou 242804, China
| | - Jia-Hui Liu
- Research Group for Advanced Materials & Sustainable Catalysis (AMSC), State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou 310032, China. .,Qing Yang Institute for Industrial Minerals, You Hua, Qing Yang, Chi Zhou 242804, China
| | - Cyril Aymonier
- Univ Bordeaux, ICMCB, Bordeaux INP, UMR 5026, CNRS, F-33600 Pessac, France
| | - Simona Fermani
- Department of Chemistry "Giacomo Ciamician", University of Bologna, Via Selmi 2, I-40126 Bologna, Italy. .,Interdepartmental Centre for Industrial Research Health Sciences & Technologies, University of Bologna, 40064 Bologna, Italy
| | - Damir Kralj
- Laboratory for Precipitation Processes, Ruđer Bošković Institute, P. O. Box 1016, HR-10001 Zagreb, Croatia
| | - Giuseppe Falini
- Department of Chemistry "Giacomo Ciamician", University of Bologna, Via Selmi 2, I-40126 Bologna, Italy.
| | - Chun-Hui Zhou
- Research Group for Advanced Materials & Sustainable Catalysis (AMSC), State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou 310032, China. .,Qing Yang Institute for Industrial Minerals, You Hua, Qing Yang, Chi Zhou 242804, China
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