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Marciesky M, Aga DS, Bradley IM, Aich N, Ng C. Mechanisms and Opportunities for Rational In Silico Design of Enzymes to Degrade Per- and Polyfluoroalkyl Substances (PFAS). J Chem Inf Model 2023; 63:7299-7319. [PMID: 37981739 PMCID: PMC10716909 DOI: 10.1021/acs.jcim.3c01303] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 10/17/2023] [Accepted: 10/18/2023] [Indexed: 11/21/2023]
Abstract
Per and polyfluoroalkyl substances (PFAS) present a unique challenge to remediation techniques because their strong carbon-fluorine bonds make them difficult to degrade. This review explores the use of in silico enzymatic design as a potential PFAS degradation technique. The scope of the enzymes included is based on currently known PFAS degradation techniques, including chemical redox systems that have been studied for perfluorooctanesulfonic acid (PFOS) and perfluorooctanoic acid (PFOA) defluorination, such as those that incorporate hydrated electrons, sulfate, peroxide, and metal catalysts. Bioremediation techniques are also discussed, namely the laccase and horseradish peroxidase systems. The redox potential of known reactants and enzymatic radicals/metal-complexes are then considered and compared to potential enzymes for degrading PFAS. The molecular structure and reaction cycle of prospective enzymes are explored. Current knowledge and techniques of enzyme design, particularly radical-generating enzymes, and application are also discussed. Finally, potential routes for bioengineering enzymes to enable or enhance PFAS remediation are considered as well as the future outlook for computational exploration of enzymatic in situ bioremediation routes for these highly persistent and globally distributed contaminants.
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Affiliation(s)
- Melissa Marciesky
- Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania 15213, United States
| | - Diana S Aga
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, United States
| | - Ian M Bradley
- Department of Civil, Structural, and Environmental Engineering, State University of New York at Buffalo, Buffalo, New York 14228, United States
- Research and Education in Energy, Environmental and Water (RENEW) Institute, University at Buffalo, The State University of New York, Buffalo, New York 14260, United States
| | - Nirupam Aich
- Department of Civil and Environmental Engineering, University of Nebraska─Lincoln, Lincoln, Nebraska 68588-0531, United States
| | - Carla Ng
- Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania 15213, United States
- Department of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania 15261, United States
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N-Doped Carbon/CeO 2 Composite as a Biomimetic Catalyst for Antibacterial Application. Int J Mol Sci 2023; 24:ijms24032445. [PMID: 36768764 PMCID: PMC9916758 DOI: 10.3390/ijms24032445] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 01/22/2023] [Accepted: 01/23/2023] [Indexed: 01/28/2023] Open
Abstract
Exploring new and high efficiency mimic enzymes is a vital and novel strategy for antibacterial application. Haloperoxidase-like enzymes have attracted wide attention thanks to their amazing catalytic property for hypohalous acid generation from hydrogen peroxide and halides. However, few materials have displayed halogenating catalytic performance until now. Herein, we synthesized N-doped C/CeO2 (N-C/CeO2) composite materials by a combination of the liquid and solid-state method. N-C/CeO2 can possess haloperoxidase-like catalytic activity by catalyzing the bromination of organic signaling compounds (phenol red) with H2O2 at a wide range of temperatures (20 °C to 55 °C), with a solution color changing from yellow to blue. Meanwhile, it exhibits high catalytic stability/recyclability in the catalytic reaction. The synthesized N-C/CeO2 composite can effectively catalyze the oxidation of Br- with H2O2 to produce HBrO without the presence of phenol red. The produced HBrO can resist typical marine bacteria like Pseudomonas aeruginosa. This study provides an efficient biomimetic haloperoxidase and a novel sustainable method for antibacterial application.
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Xu X, Wang H, Tan CH, Ye X. Applications of Vanadium, Niobium, and Tantalum Complexes in Organic and Inorganic Synthesis. ACS ORGANIC & INORGANIC AU 2022; 3:74-91. [PMID: 37035284 PMCID: PMC10080730 DOI: 10.1021/acsorginorgau.2c00056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 12/12/2022] [Accepted: 12/13/2022] [Indexed: 12/31/2022]
Abstract
Organometallic catalysis is a powerful strategy in chemical synthesis, especially with the cheap and low toxic metals based on green chemistry principle. Thus, the selection of the metal is particularly important to plan relevant and applicable processes. The group VB metals have been the subject of exciting and significant advances in both organic and inorganic synthesis. In this Review, we have summarized some reports from recent decades, which are about the development of group VB metals utilized in various types of reactions, such as oxidation, reduction, alkylation, dealkylation, polymerization, aromatization, protein synthesis, and practical water splitting.
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Affiliation(s)
- Xinru Xu
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Key Laboratory of Marine Fishery Resources Exploitment & Utilization of Zhejiang Province, Zhejiang University of Technology, 18 Chaowang Road, Hangzhou 310014, P. R. China
| | - Hong Wang
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Key Laboratory of Marine Fishery Resources Exploitment & Utilization of Zhejiang Province, Zhejiang University of Technology, 18 Chaowang Road, Hangzhou 310014, P. R. China
| | - Choon-Hong Tan
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Xinyi Ye
- College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Key Laboratory of Marine Fishery Resources Exploitment & Utilization of Zhejiang Province, Zhejiang University of Technology, 18 Chaowang Road, Hangzhou 310014, P. R. China
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Keramidas AD, Drouza C, Licini G, Crans DC. Biological contributions to the 12th international vanadium symposium. J Inorg Biochem 2022; 237:112014. [PMID: 36184386 DOI: 10.1016/j.jinorgbio.2022.112014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
| | - Chryssoula Drouza
- Cyprus University of Technology, Department of Agricultural Production, Biotechnology and Food Science, Limassol 3036, Cyprus.
| | - Giulia Licini
- Dipartimento di Scienze Chimiche, Università Degli Studi di Padova and CIRCC, Padova Unit, via Marzolo 1, Padova 35131, Italy.
| | - Debbie C Crans
- Chemistry Department, Colorado State University, Fort Collins, CO 80523, USA..
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The Impact of 3-(trihydroxysilyl)-1-propanesulfonic Acid Treatment on the State of Vanadium Incorporated on SBA-15 Matrix. Catalysts 2021. [DOI: 10.3390/catal11030397] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Bifunctional catalysts—e.g., those with acidic and redox sites—are of particular importance, especially in the cascade processes, including the one-pot transformation of glycerol to acrylic acid. In this study, we explore one aspect of the preparation of a vanadium-containing catalyst, which can be further modified with 3-(trihydroxysilyl)-1-propanesulfonic acid (TPS). The state of vanadium species loaded on mesoporous ordered silica of SBA-15 type was investigated before and after treatment with TPS, which can also be applied for the generation of acidic centers. Two vanadium sources, i.e., ammonium metavanadate and vanadium(IV) oxide sulfate, were applied to generate redox sites on SBA-15. The structure of materials obtained was analyzed using N2 adsorption/desorption and XRD measurements. For the estimation of the amount of vanadium and characterization of its state, the following techniques were applied: ICP, UV-Vis, XPS, ESR and FTIR combined with pyridine adsorption. The treatment of vanadium containing SBA-15 with TPS was found to lead to the oxidation of V4+ to V5+ and the partial removal of vanadium species, leading to a decrease in the number of penta-coordinated vanadium species. These features should be taken into account in the design of bifunctional catalysts with vanadium-active centers and SO3H acidic sites coming from TPS.
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Hess C. New advances in using Raman spectroscopy for the characterization of catalysts and catalytic reactions. Chem Soc Rev 2021; 50:3519-3564. [PMID: 33501926 DOI: 10.1039/d0cs01059f] [Citation(s) in RCA: 63] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Gaining insight into the mode of operation of heterogeneous catalysts is of great scientific and economic interest. Raman spectroscopy has proven its potential as a powerful vibrational spectroscopic technique for a fundamental and molecular-level characterization of catalysts and catalytic reactions. Raman spectra provide important insight into reaction mechanisms by revealing specific information on the catalysts' (defect) structure in the bulk and at the surface, as well as the presence of adsorbates and reaction intermediates. Modern Raman instrumentation based on single-stage spectrometers allows high throughput and versatility in design of in situ/operando cells to study working catalysts. This review highlights major advances in the use of Raman spectroscopy for the characterization of heterogeneous catalysts made during the past decade, including the development of new methods and potential directions of research for applying Raman spectroscopy to working catalysts. The main focus will be on gas-solid catalytic reactions, but (photo)catalytic reactions in the liquid phase will be touched on if it appears appropriate. The discussion begins with the main instrumentation now available for applying vibrational Raman spectroscopy to catalysis research, including in situ/operando cells for studying gas-solid catalytic processes. The focus then moves to the different types of information available from Raman spectra in the bulk and on the surface of solid catalysts, including adsorbates and surface depositions, as well as the use of theoretical calculations to facilitate band assignments and to describe (resonance) Raman effects. This is followed by a presentation of major developments in enhancing the Raman signal of heterogeneous catalysts by use of UV resonance Raman spectroscopy, surface-enhanced Raman spectroscopy (SERS), and shell-isolated nanoparticle surface-enhanced Raman spectroscopy (SHINERS). The application of time-resolved Raman studies to structural and kinetic characterization is then discussed. Finally, recent developments in spatially resolved Raman analysis of catalysts and catalytic processes are presented, including the use of coherent anti-Stokes Raman spectroscopy (CARS) and tip-enhanced Raman spectroscopy (TERS). The review concludes with an outlook on potential future developments and applications of Raman spectroscopy in heterogeneous catalysis.
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Affiliation(s)
- Christian Hess
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Alarich-Weiss-Str. 8, 64287, Darmstadt, Germany.
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