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Zorba L, Stylianakis I, Tsoureas N, Kolocouris A, Vougioukalakis GC. Copper-Catalyzed One-Pot Synthesis of Thiazolidin-2-imines. J Org Chem 2024; 89:7727-7740. [PMID: 38725347 PMCID: PMC11190980 DOI: 10.1021/acs.joc.4c00394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 03/27/2024] [Accepted: 04/30/2024] [Indexed: 06/23/2024]
Abstract
The synthesis of thiazolines, thiazolidines, and thiazolidinones has been extensively studied, due to their biological activity related to neurodegenerative diseases, such as Parkinson's and Alzheimer's, as well as their antiparasitic and antihypertensive properties. The closely related thiazolidin-2-imines have been studied less, and efficient strategies for synthesizing them, mainly based on the reaction of propargylamines with isothiocyanates, have been explored less. The use of one-pot approaches, providing modular, straightforward, and sustainable access to these compounds, has also received very little attention. Herein, we report a novel, one-pot, multicomponent, copper-catalyzed reaction among primary amines, ketones, terminal alkynes, and isothiocyanates, toward thiazolidin-2-imines bearing quaternary carbon centers on the five-membered ring, in good to excellent yields. Density functional theory calculations, combined with experimental mechanistic findings, suggest that the copper(I)-catalyzed reaction between the in situ-formed propargylamines and isothiocyanates proceeds with a lower energy barrier in the pathway leading to the S-cyclized product, compared to that of the N-cyclized one, toward the chemo- and regioselective formation of 5-exo-dig S-cyclized thiazolidin-2-imines.
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Affiliation(s)
- Leandros
P. Zorba
- Laboratory
of Organic Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimioupolis, 15771 Athens, Greece
| | - Ioannis Stylianakis
- Laboratory
of Medicinal Chemistry, Section of Pharmaceutical Chemistry, Department
of Pharmacy, National and Kapodistrian University
of Athens, Panepistimioupolis
Zografou, 15771 Athens, Greece
| | - Nikolaos Tsoureas
- Laboratory
of Inorganic Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimioupolis, 15771 Athens, Greece
| | - Antonios Kolocouris
- Laboratory
of Medicinal Chemistry, Section of Pharmaceutical Chemistry, Department
of Pharmacy, National and Kapodistrian University
of Athens, Panepistimioupolis
Zografou, 15771 Athens, Greece
| | - Georgios C. Vougioukalakis
- Laboratory
of Organic Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimioupolis, 15771 Athens, Greece
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2
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Ghasemi‐Ghahsareh A, Safaei‐Ghomi J, Oboudatian HS. Ultrasound Probe‐assisted Telescopic One‐pot Synthesis of Spiro[indene‐2,2’‐naphthalene]‐4’‐carbonitrile Derivatives using Fe
3
O
4
@SCH
2
CO
2
H@Ni‐NH
2
as a Reusable Nanocatalyst. ChemistrySelect 2023. [DOI: 10.1002/slct.202201795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Aref Ghasemi‐Ghahsareh
- Department of Organic Chemistry Faculty of Chemistry University of Kashan Kashan 51167 I. R. Iran
| | - Javad Safaei‐Ghomi
- Department of Organic Chemistry Faculty of Chemistry University of Kashan Kashan 51167 I. R. Iran
| | - Hourieh Sadat Oboudatian
- Department of Organic Chemistry Faculty of Chemistry University of Kashan Kashan 51167 I. R. Iran
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3
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Rajasekhar S, Das S, Karuppasamy R, Musuvathi Motilal B, Chanda K. Identification of novel inhibitors for Prp protein of Mycobacterium tuberculosis by structure based drug design, and molecular dynamics simulations. J Comput Chem 2022; 43:619-630. [PMID: 35167132 DOI: 10.1002/jcc.26823] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 11/25/2021] [Accepted: 01/30/2022] [Indexed: 01/09/2023]
Abstract
In this study, we assess the effective inhibition of a series of thiazolidine derivatives (1a-1q) were adopting structure-based drug design. Thiazolidine is a five-membered ring structure with thioether and amino groups at positions 1 and 3. Although, thiazolidine may bind to a wide range of protein targets, it is a major heterocyclic core in medicinal chemistry. Different scoring utilities including AutoDock Vina, Glide, and MM/GBSA analysis were performed to commensurate the improvement of screening progress. The evaluated binding affinities were validated by molecular dynamics simulations over a period of 20 ns for the interactions between the Mycobacterium tuberculosis protein PrpR with three novel scaffolds (1b, 1j, and 1k). All the scaffolds exhibited distinct stable interactions with the significant residues like Arg169, Arg197, Tyr248, Arg308, and Gly311 respectively. Further, the inhibitory activities of scaffolds were predicted and evaluated by machine learning based algorithm to rank the above proposed compounds. This study reveals the potential of 1k and 1j as effective inhibitor candidates for the treatment of tuberculosis.
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Affiliation(s)
- Sreerama Rajasekhar
- Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology, Vellore, Tamil Nadu, India
| | - Soumyadip Das
- Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology, Vellore, Tamil Nadu, India
| | - Ramanathan Karuppasamy
- Department of Biotechnology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India
| | | | - Kaushik Chanda
- Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology, Vellore, Tamil Nadu, India
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4
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Preeti, Kumar M, Jaiswal A, Nand Singh K. Microwave‐Assisted Diversity‐Oriented Synthesis of Thiazol‐2(
3H
)‐ones and Its Interaction with Biomacromolecules. ASIAN J ORG CHEM 2022. [DOI: 10.1002/ajoc.202100389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Preeti
- Department of Chemistry, Institute of Science Banaras Hindu University Varanasi 221005 India
| | - Mahesh Kumar
- Department of Chemistry, Institute of Science Banaras Hindu University Varanasi 221005 India
| | - Anjali Jaiswal
- Department of Chemistry, Institute of Science Banaras Hindu University Varanasi 221005 India
| | - Krishna Nand Singh
- Department of Chemistry, Institute of Science Banaras Hindu University Varanasi 221005 India
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5
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Abstract
2-Aminopyridine is a simple, low molecular weight and perfectly functionalised moiety known for the synthesis of diverse biological molecules. Many pharmaceutical companies across the globe aim to synthesise low-molecular weight molecules for use as pharmacophores against various biological targets. 2-Aminopyridine can serve as a perfect locomotive in the synthesis and pulling of such molecules towards respective pharmacological goals. The major advantage of this moiety is its simple design, which can be used to produce single products with minimum side reactions. Moreover, the exact weight of synthesised compounds is low, which enables facile identification of toxicity-causing metabolites in drug discovery programmes. This manuscript is a quick review of such pharmacophores derived from 2-aminopyridine.
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Affiliation(s)
- Ramdas Nishanth Rao
- Department of Chemistry, School of Advanced Science, Vellore Institute of Technology, Vellore 632014, India.
| | - Kaushik Chanda
- Department of Chemistry, School of Advanced Science, Vellore Institute of Technology, Vellore 632014, India.
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6
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Rajasekhar S, Karuppasamy R, Chanda K. Exploration of potential inhibitors for tuberculosis via structure-based drug design, molecular docking, and molecular dynamics simulation studies. J Comput Chem 2021; 42:1736-1749. [PMID: 34216033 DOI: 10.1002/jcc.26712] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 05/28/2021] [Accepted: 06/21/2021] [Indexed: 12/20/2022]
Abstract
Drug resistance in tuberculosis is major threat to human population. In the present investigation, we aimed to identify novel and potent benzimidazole molecules to overcome the resistance management. A series of 20 benzimidazole derivatives were examined for its activity as selective antitubercular agents. Initially, AutodockVina algorithm was performed to assess the efficacy of the molecules. The results are further enriched by redocking by means of Glide algorithm. The binding free energies of the compounds were then calculated by MM-generalized-born surface area method. Molecular docking studies elucidated that benzimidazole derivatives has revealed formation of hydrogen bond and strong binding affinity in the active site of Mycobacterium tuberculosis protein. Note that ARG308, GLY189, VAL312, LEU403, and LEU190 amino acid residues of Mycobacterium tuberculosis protein PrpR are involved in binding with ligands of benzimidazoles. Interestingly, the ligands exhibited same binding potential to the active site of protein complex PrpR in both the docking programs. In essence, the result portrays that benzimidazole derivatives such as 1p, 1q, and 1 t could be potent and selective antitubercular agents than the standard drug isoniazid. These compounds were then subjected to molecular dynamics simulation to validate the dynamics activity of the compounds against PrpR. Finally, the inhibitory behavior of compounds was predicted using a machine learning algorithm trained on a data collection of 15,000 compounds utilizing graph-based signatures. Overall, the study concludes that designed benzimidazoles can be employed as antitubercular agents. Indeed, the results are helpful for the experimental biologists to develop safe and non-toxic drugs against tuberculosis.
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Affiliation(s)
- Sreerama Rajasekhar
- Department of Chemistry, School of Advanced Science, Vellore Institute of Technology, Vellore, India
| | - Ramanathan Karuppasamy
- Department of Biotechnology, School of BioSciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India
| | - Kaushik Chanda
- Department of Chemistry, School of Advanced Science, Vellore Institute of Technology, Vellore, India
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7
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Rao RN, Chanda K. An expeditious microwave assisted one-pot sequential route to pyrido fused imidazo[4,5- c] quinolines in green media. NEW J CHEM 2021. [DOI: 10.1039/d0nj05835a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
A novel one-pot sequential route for the synthesis of pyrido[2′,1′:2,3]imidazo[4,5-c]quinolines via microwave-assisted sequential reaction of 2-aminopyridines, 2-bromophenacyl bromides, and aldehydes has been developed in green media.
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Affiliation(s)
- Ramdas Nishanth Rao
- Department of Chemistry
- School of Advanced Science
- Vellore Institute of Technology
- Vellore-632014
- India
| | - Kaushik Chanda
- Department of Chemistry
- School of Advanced Science
- Vellore Institute of Technology
- Vellore-632014
- India
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8
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Mukku N, Madivalappa Davanagere P, Chanda K, Maiti B. A Facile Microwave-Assisted Synthesis of Oxazoles and Diastereoselective Oxazolines Using Aryl-Aldehydes, p-Toluenesulfonylmethyl Isocyanide under Controlled Basic Conditions. ACS OMEGA 2020; 5:28239-28248. [PMID: 33163807 PMCID: PMC7643254 DOI: 10.1021/acsomega.0c04130] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Accepted: 10/06/2020] [Indexed: 06/11/2023]
Abstract
In this study, a highly efficient two-component [3 + 2] cycloaddition reaction of substituted aryl aldehydes with 4-toluenesulfonylmethyl isocyanide (TosMIC) in the presence of 2 equiv of potassium phosphate as a base to 5-substituted oxazoles were established in a isopropanol medium under microwave irradiation. However, using 1 equiv of K3PO4 as a base resulted in the diastereoselective synthesis of 4,5-disubstituted oxazolines under identical reaction conditions. The foremost benefits of these protocols are the moderate-to-excellent yields with good functional group compatibility, simple experimental procedure, inexpensive readily available starting materials, nonchromatographic purification, and high bond-forming efficiency. The synthetic manipulation reported herein represents a cleaner route to the sustainable preparation of 5-substituted oxazoles and diastereoselective 4,5-disubstituted oxazolines derivatives.
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Affiliation(s)
- Narasimharao Mukku
- Department of Chemistry,
School of Advanced Sciences, Vellore Institute
of Technology, Vellore 632014, India
| | | | - Kaushik Chanda
- Department of Chemistry,
School of Advanced Sciences, Vellore Institute
of Technology, Vellore 632014, India
| | - Barnali Maiti
- Department of Chemistry,
School of Advanced Sciences, Vellore Institute
of Technology, Vellore 632014, India
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