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P Domingues N, Pougin MJ, Li Y, Moubarak E, Jin X, Uran FP, Ortega-Guerrero A, Ireland CP, Schouwink P, Schürmann C, Espín J, Oveisi E, Ebrahim FM, Queen WL, Smit B. Unraveling metal effects on CO 2 uptake in pyrene-based metal-organic frameworks. Nat Commun 2025; 16:1516. [PMID: 39934127 DOI: 10.1038/s41467-025-56296-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Accepted: 01/13/2025] [Indexed: 02/13/2025] Open
Abstract
Pyrene-based metal-organic frameworks (MOFs) have tremendous potential for various applications. With infinite structural possibilities, the MOF community often relies on simulations to identify the most promising candidates for given applications. Among thousands of reported structures, many exhibit limited reproducibility - in either synthesis, performance, or both - owing to the sensitivity of synthetic conditions. Geometric distortions that may arise in the functional groups of pyrene-based ligands during synthesis and/or activation cannot easily be predicted. This sometimes leads to discrepancies between in silico and experimental results. Here, we investigate a series of pyrene-based MOFs for carbon capture. These structures share the same ligand (1,3,6,8-tetrakis(p-benzoic acid)pyrene (TBAPy)) but have different metals (M-TBAPy, M = Al, Ga, In, and Sc). The ligands stack parallel in their orthorhombic crystal structure, creating a promising binding site for CO2. As predicted, the metal is shown to affect the pyrene stacking distance and, therefore, the CO2 uptake. Here, we investigate the metal's intrinsic effects on the MOFs' crystal structure. Crystallographic analysis shows the emergence of additional phases, which thus impacts the overall adsorption characteristics of the MOFs. Considering these additional phases improves the prediction of adsorption isotherms, enhancing our understanding of pyrene-based MOFs for carbon capture.
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Affiliation(s)
- Nency P Domingues
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | - Miriam J Pougin
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | - Yutao Li
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | - Elias Moubarak
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | - Xin Jin
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | - F Pelin Uran
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | - Andres Ortega-Guerrero
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
- Nanotech@surfaces Laboratory, Empa - Swiss Federal Laboratories for Materials Science and Technology, 8600, Dübendorf, Switzerland
| | - Christopher P Ireland
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | - Pascal Schouwink
- X-ray Diffraction and Surface Analytics Platform, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | | | - Jordi Espín
- Laboratory for Functional Inorganic Materials (LFIM), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | - Emad Oveisi
- Interdisciplinary Centre for Electron Microscopy (CIME), École Polytechnique Fédérale de Lausanne (EPFL), 1015, Lausanne, Switzerland
| | - Fatmah Mish Ebrahim
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
- Cavendish Laboratory, School of Physical Sciences, University of Cambridge, Cambridge, United Kingdom
| | - Wendy Lee Queen
- Laboratory for Functional Inorganic Materials (LFIM), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland
| | - Berend Smit
- Laboratory of Molecular Simulation (LSMO), Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, 1951, Sion, Switzerland.
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Mashhadimoslem H, Abdol MA, Karimi P, Zanganeh K, Shafeen A, Elkamel A, Kamkar M. Computational and Machine Learning Methods for CO 2 Capture Using Metal-Organic Frameworks. ACS NANO 2024; 18:23842-23875. [PMID: 39173133 DOI: 10.1021/acsnano.3c13001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/24/2024]
Abstract
Machine learning (ML) using data sets of atomic and molecular force fields (FFs) has made significant progress and provided benefits in the fields of chemistry and material science. This work examines the interactions between chemistry and materials computational science at the atomic and molecular scales for metal-organic framework (MOF) adsorbent development toward carbon dioxide (CO2) capture. Herein, a connection will be drawn between atomic forces predicted by ML algorithms and the structures of MOFs for CO2 adsorption. Our study also takes into account the successes of atomic computational screening in the field of materials science, especially quantum ML, and its relationship to ML algorithms that clarify advancements in the area of CO2 adsorption by MOFs. Additionally, we reviewed the processes for supplying data to ML algorithms for algorithm training, including text mining from scientific articles, and MOF's formula processing linked to the chemical properties of MOFs. To create ML algorithms for future research, we recommend that the digitization of scientific records can help efficiently synthesize advanced MOFs. Finally, a future vision for developing pioneer MOF synthesis routes for CO2 capture is presented in this review article.
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Affiliation(s)
- Hossein Mashhadimoslem
- Chemical Engineering Department, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - Mohammad Ali Abdol
- Chemical Engineering Department, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - Peyman Karimi
- Chemical Engineering Department, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - Kourosh Zanganeh
- Natural Resources Canada (NRCan), Canmet ENERGY-Ottawa (CE-O), 1 Haanel Dr., Ottawa, ON K1A 1M1 Canada
| | - Ahmed Shafeen
- Natural Resources Canada (NRCan), Canmet ENERGY-Ottawa (CE-O), 1 Haanel Dr., Ottawa, ON K1A 1M1 Canada
| | - Ali Elkamel
- Chemical Engineering Department, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
- Department of Chemical Engineering, Khalifa University, P.O. Box 127788, Abu Dhabi, United Arab Emirates
| | - Milad Kamkar
- Chemical Engineering Department, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
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Li X, Zhao Y, Hao X, Wang X, Luan F, Tian C, Zhang Z, Yu S, Zhuang X. Self-luminescent europium based metal organic frameworks nanorods as a novel electrochemiluminescence chromophore for sensitive ulinastatin detection in biological samples. Talanta 2022; 250:123726. [PMID: 35820336 DOI: 10.1016/j.talanta.2022.123726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 06/28/2022] [Accepted: 07/04/2022] [Indexed: 10/17/2022]
Abstract
In this work, we developed a novel electrochemiluminescence (ECL) biosensor for ulinastatin (UTI) detection based on self-luminescent metal-organic framework (L-MOF) nanomaterials. The L-MOFs could be simply prepared by one-pot methods using Eu3+ and 4,4',4″-s-triazine-1,3,5-triyltri-m-aminobenzoic acid (H3TATAB) as the metallic center and organic ligand, respectively. The Eu-TATAB exhibited high efficiency and stable ECL performance when using K2S2O8 as coreactant. For the established biosensor, Eu-TATAB was both used as the ECL chromophore and protein carrier due to its outstanding biocompatibility and large superficial area, which could load sufficient antibodies to link with antigen in the biosensor for subsequent detection. The established sandwich ECL biosensor showed a wide linear range of 0.1 ng mL-1 - 105 ng mL-1 and a low limit of detection of 9.7 pg mL-1 for UTI detection. In addition, the developed ECL biosensor could also be successfully applied to the real UTI sample determination in serum. The reported biosensor strategy could provide a guide for developing more other novel and promising high-performance ECL nanomaterials, and also be used as a potential method for ultrasensitive UTI detection in disease research.
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Affiliation(s)
- Xin Li
- College of Chemistry and Chemical Engineering, Yantai University, Yantai, 264005, China
| | - Yuqing Zhao
- College of Chemistry and Chemical Engineering, Yantai University, Yantai, 264005, China
| | - Xiaowen Hao
- College of Chemistry and Chemical Engineering, Yantai University, Yantai, 264005, China
| | - Xiaobin Wang
- College of Chemistry and Chemical Engineering, Yantai University, Yantai, 264005, China
| | - Feng Luan
- College of Chemistry and Chemical Engineering, Yantai University, Yantai, 264005, China
| | - Chunyuan Tian
- College of Chemistry and Chemical Engineering, Yantai University, Yantai, 264005, China
| | - Zhiyang Zhang
- Shandong Key Laboratory of Coastal Environmental Processes, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China
| | - Shunyang Yu
- Shandong Key Laboratory of Coastal Environmental Processes, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China.
| | - Xuming Zhuang
- College of Chemistry and Chemical Engineering, Yantai University, Yantai, 264005, China.
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An Q, Bao S, Li X, Sun J, Su Z. An anthracene-based microporous metal–organic framework for adsorbing CO 2 and detecting TNP sensitivity. NEW J CHEM 2022. [DOI: 10.1039/d2nj02015g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An anthracene-based microporous MOF of CUST-607 was synthesized by a solvothermal method. CUST-607 possesses a large surface area and shows strong adsorption toward CO2. In the fluorescence experiments, CUST-607 exhibits total quenching for TNP.
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Affiliation(s)
- Qingbo An
- School of Chemical and Environmental Engineering, Changchun University of Science and Technology, Jilin Provincial Science and Technology Innovation Centre of Optical Materials and Chemistry, Changchun, People's Republic of China
| | - Siqi Bao
- School of Chemical and Environmental Engineering, Changchun University of Science and Technology, Jilin Provincial Science and Technology Innovation Centre of Optical Materials and Chemistry, Changchun, People's Republic of China
| | - Xiao Li
- School of Chemical and Environmental Engineering, Changchun University of Science and Technology, Jilin Provincial Science and Technology Innovation Centre of Optical Materials and Chemistry, Changchun, People's Republic of China
| | - Jing Sun
- School of Chemical and Environmental Engineering, Changchun University of Science and Technology, Jilin Provincial Science and Technology Innovation Centre of Optical Materials and Chemistry, Changchun, People's Republic of China
| | - Zhongmin Su
- School of Chemical and Environmental Engineering, Changchun University of Science and Technology, Jilin Provincial Science and Technology Innovation Centre of Optical Materials and Chemistry, Changchun, People's Republic of China
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Fei S, Hsu WL, Delaunay JJ, Daiguji H. Molecular dynamics study of water confined in MIL-101 metal-organic frameworks. J Chem Phys 2021; 154:144503. [PMID: 33858173 DOI: 10.1063/5.0040909] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Molecular dynamics simulations of water adsorbed in Material Institute Lavoisier MIL-101(Cr) metal-organic frameworks are performed to analyze the kinetic properties of water molecules confined in the framework at 298.15 K and under different vapor pressures and clarify the water adsorption mechanism in MIL-101(Cr). The terahertz frequency-domain spectra (THz-FDS) of water are calculated by applying fast Fourier transform to the configurational data of water molecules. According to the characteristic frequencies in the THz-FDS, the dominant motions of water molecules in MIL-101(Cr) can be categorized into three types: (1) low-frequency translational motion (0-0.5 THz), (2) medium-frequency vibrational motion (2-2.5 THz), and (3) high-frequency vibrational motion (>6 THz). Each type of water motion is confirmed by visualizing the water configuration in MIL-101(Cr). The ratio of the number of water molecules with low-frequency translational motion to the total number of water molecules increases with the increase in vapor pressure. In contrast, that with medium-frequency vibrational motion is found to decrease with vapor pressure, exhibiting a pronounced decrease after water condensation has started in the cavities. That with the high-frequency vibrational motion is almost independent of the vapor pressure. The interactions between different types of water molecules affect the THz-FDS. Furthermore, the self-diffusion coefficient and the velocity auto-correlation function are calculated to clarify the adsorption state of the water confined in MIL-101(Cr). To confirm that the general trend of the THz-FDS does not depend on the water model, the simulations are performed using three water models, namely, rigid SPC/E, flexible SPC/E, and rigid TIP5PEw.
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Affiliation(s)
- Shubo Fei
- Department of Mechanical Engineering, The University of Tokyo, Tokyo 113-8656, Japan
| | - Wei-Lun Hsu
- Department of Mechanical Engineering, The University of Tokyo, Tokyo 113-8656, Japan
| | - Jean-Jacques Delaunay
- Department of Mechanical Engineering, The University of Tokyo, Tokyo 113-8656, Japan
| | - Hirofumi Daiguji
- Department of Mechanical Engineering, The University of Tokyo, Tokyo 113-8656, Japan
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Song C, Ye W, Liu Y, Huang H, Zhang H, Lin H, Lu R, Zhang S. Facile Preparation of Porous Carbon Derived from Industrial Biomass Waste as an Efficient CO 2 Adsorbent. ACS OMEGA 2020; 5:28255-28263. [PMID: 33163809 PMCID: PMC7643255 DOI: 10.1021/acsomega.0c04165] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 10/09/2020] [Indexed: 05/15/2023]
Abstract
A porous carbon CO2 adsorbent based on soybean cake (industrial biomass waste) has been successfully prepared by direct carbonation, following KOH activation. The prepared porous carbon adsorbent exhibits efficient CO2 capture performance with the highest adsorption capacity of 4.19 and 6.61 mmol/g at 298 and 273 K under atmospheric pressure, respectively. Moreover, the porous carbon adsorbent also shows good static CO2 adsorption capacity at a low pressure (0.15 bar) with an uptake of 1.26 mmol/g and an equally ideal dynamic CO2 capture capability with an uptake of 1.28 mmol/g (15% CO2) at 298 K. Additionally, the ideal adsorbed solution theory (IAST) model has been used to measure the selectivity of the porous carbon, and the IAST factors of CO2/N2 (15/85, fuel gas), CO2/CH4 (40/60, biogas), and CH4/N2 (50/50, coalbed gas) are about 27, 6, and 6, respectively. The dynamic breakthrough test reveals the strong interaction between the porous carbon and CO2, which also verifies the considerable selective capture ability of this material for CO2. Furthermore, the soybean cake-based CO2 adsorbent also presents prominent cyclic regeneration capacity (a five-time cyclic test) with lower isosteric heats (34-18 kJ/mmol) of CO2 adsorption.
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