Radical-water complexes in Earth's atmosphere

The stability of oxygen-centered radicals and its response to hydrogen bonding interactions

The stability of various alkoxy/aryloxy/peroxy radicals, as well as TEMPO and triplet dioxygen (3 O2 ) has been explored at a variety of theoretical levels. Good correlations between RSEtheor and RSEexp are found for hybrid DFT methods, for compound schemes such as G3B3-D3, and also for DLPNO-CCSD(T) calculations. The effects of hydrogen bonding interactions on the stability of oxygen-centered radicals have been probed by addition of a single solvating water molecule. While this water molecule always acts as a H-bond donor to the oxygen-centered radical itself, it can act as a H-bond donor or acceptor to the respective closed-shell parent.

The influence of a single water molecule on the reaction of BrO + HO2

The influence of a single water molecule on the BrO + HO2 hydrogen extraction reaction has been explored by taking advantage of CCSD(T)/aug-cc-pVTZ//B3LYP/6-311 +  + G(d,p) method. The reaction in the absence of water have two distinct kinds of H-extraction channels to generate HOBr + O2 (1Δg) and HBr + O3, and the channel of generation of HOBr + O2 (1Δg) dominated the BrO + HO2 reaction. The rate coefficient of the most feasible channel for the BrO + HO2 reaction in the absence of water is estimated to be 1.44 × 10-11 cm3 molecule-1 s-1 at 298.15 K, which is consistent with the experiment. The introduction of water made the reaction more complex, but the products are unchanged. Four distinct channels, beginning with HO2…H2O with BrO, H2O…HO2 with BrO, BrO…H2O with HO2, H2O…BrO with HO2 are researched. The most feasible channels, stemming from H2O…HO2 with BrO, and BrO…H2O with HO2, are much slower than the reaction of BrO + HO2 without water, respectively. Thus, the existence of water molecule takes a negative catalytic role for BrO + HO2 reaction.

Autoxidation of Formaldehyde with Oxygen-A Comparison of Reaction Channels

The autoxidation of formaldehyde through initiation by triplet oxygen is studied via two initial steps: (1) H-atom abstraction and (2) ³O₂ addition reaction. The reaction energy profiles show that the reactions are thermodynamically and kinetically demanding. A comparison of the pathways of these initial reactions and the search for a less energy-demanding pathway is presented. The presence of a Brønsted acid has no effect on the energetics of the reaction, while the presence of a single water molecule catalyst enhances the initial reactions. The H-atom abstraction reaction from formaldehyde results in formyl and hydroperoxy radicals. These radicals on further reaction with the second equivalent of ³O₂ lead to a CO + 2HO₂ product channel. The ³O₂ addition reaction to formaldehyde results in a triplet biradical intermediate which further leads to performic acid, the precursor in the synthesis of carboxylic acids from aldehydes. In the presence of water molecules, performic acid is formed in a single kinetic step, and this leads to a CO₂ + OH + HO₂ product channel upon subsequent reaction with ³O₂ in a thermodynamically favorable reaction. The results show that the less established ³O₂ addition reaction to aldehydes is a viable route for autoxidation in the absence of purpose-built initiators, in addition to the well-established H-atom abstraction route.

Catalytic effect of water and formic acid on the reaction of carbonyl sulfide with dimethyl amine under tropospheric conditions

CCSD(T)/aug-cc-pVTZ//M06-2X/aug-cc-pVTZ calculations were performed on the addition of amines [i.e. ammonia (NH₃), methyl amine (MA), and dimethyl amine (DMA)] to carbonyl sulfide (OCS), followed by transfer of the amine H-atom to either the S-atom or O-atom of OCS, assisted by a single water (H₂O) or a formic acid (FA) molecule, leading to the formation of the corresponding carbamothioic S- or O acids. For the OCS + NH₃ and OCS + MA reactions with or without the H₂O or FA, very high barriers were observed, making these reactions unfeasible. Interestingly, the barrier heights for the OCS + DMA reaction, involving H-atom transfer to either the S-atom or O-atom of OCS and assisted by a FA, were found to be -4.2 kcal mol^-1 and -3.9 kcal mol^-1, respectively, relative to those of the separated reactants. The barrier height values suggest that FA lowers the reaction barriers by ∼28.4 kcal mol^-1 and ∼35.9 kcal mol^-1 compared to the OCS + DMA reaction without the catalyst. Rate coefficient calculations were performed on the OCS + DMA reaction both without a catalyst, and assisted by a H₂O and a FA molecule using canonical variational transition state theory and small curvature tunneling at the temperatures between 200 and 300 K. The rate data show that the OCS + DMA + FA reaction proceeds through H-atom transfer to the S-atom of OCS, which was found to be ∼10³-10¹¹ and 10³-10¹⁰ times faster than the OCS + DMA and OCS + DMA + H₂O reactions, respectively, in the studied temperature range. For the same temperature range, the rate of the OCS + DMA + FA reaction was found to be ∼10⁸-10¹⁶ and 10³-10¹² times faster than the OCS + DMA and OCS + DMA + H₂O reactions in which H-atom transfer to the O-atom of OCS occurred. This suggests that the OCS + DMA reaction that is assisted by FA is more efficient than the H₂O assisted reaction. In addition, the rate of the OCS + DMA + FA reaction was found to be ∼10¹⁰ times slower than the OCS + ˙OH reaction at 298 K. This clarifies that the OCS + DMA + FA reaction may be feasible for the atmospheric removal of OCS under night-time forest fire conditions when the OCS and DMA concentrations are high and the ˙OH concentration is low.

Influence of Water on the Gas-Phase Reaction of Dimethyl Sulfide with BrO in the Marine Boundary Layer

The effect of a single water molecule on the reaction of dimethyl sulfide (DMS) with BrO reaction has been investigated using quantum chemical calculations at the CCSD(T)/6-311++G**//BH&HLYP/aug-cc-pVTZ level of theory. Two reaction mechanisms have been considered both in the absence and the presence of water, namely, oxygen atom transfer and hydrogen abstraction, among which the oxygen atom transfer was predominant. Five reaction channels were found in the absence of water, in which the channels starting from the cis-configuration of the pre-reaction complexes were more favorable because of the low energy barrier. The inclusion of water slightly decreased the energy barrier height of most oxygen atom transfer channels, while making the hydrogen abstraction channels more complex. While the effective rate coefficients for the oxygen atom transfer paths are found to have decreased by 3-7 orders of magnitude in the presence of water relative to the water-free reactions, the negligible fraction of reactants that are effectively clustered with water does not significantly change the overall rate of the formation of dimethyl sulfoxide and Br. The present results show that the overall mechanism and rate of the DMS + BrO reaction may not be affected by humidity under atmospheric conditions.

Unimolecular decomposition of acetyl peroxy radical: a potential source of tropospheric ketene

The unimolecular decomposition of acetyl peroxy radicals followed by subsequent nitration is known to lead to the formation of peroxy acetyl nitrate (PAN) in the troposphere. Using high level quantum chemical calculations, we show that the acetyl peroxy radical is a precursor in the formation of tropospheric ketene. The results show that the presence of a single or double water molecule(s) as a catalyst does not influence the decomposition reaction directly to form ketene and hydroperoxy radicals. The electronic excitation of the reactive and product complexes occurs in the wavelength range of ∼1400 nm, suggesting that the complexes undergo photoexcitation in the near IR region. The results ascertain that the dissociation of acetyl peroxy radicals into ketene and hydroperoxy radicals occurs more likely through the excitation route and the corresponding excitation wavelength reveals that the reactions are red-light driven. Three different product complexes, ketene·HO2, ketene·H2O·HO2 and ketene·(H2O)2·HO2, are formed from the reaction. The direct dynamics simulations show that the product complexes are more stable and possess a long lifetime. The calculated temperature dependent equilibrium constant of the product complexes reveals that their atmospheric abundances decrease with increasing altitudes.

Evidence For a Water-Stabilised Ion Radical Complex: Photoelectron Spectroscopy and Ab Initio Calculations

A photoelectron spectrum corresponding to an unknown 174m/z anion complex has been recorded. Initially believed to be I−…CH3CH2OH (173m/z), the spectrum has been assigned as belonging to that of an I−…H2O…CH3CH2 radical anion complex. The major peaks in the photoelectron spectrum occur at 3.54eV and 4.48eV as the 2P3/2 and 2P1/2 spin-orbit states of iodine respectively. Ab initio calculations were performed in order to rationalise the existence of the complex, with all structures converging to a ‘ring-like’ geometry, with the iodide anion bound to both the water molecule as well as a hydrogen of the ethyl radical, with the other hydrogen of water bound to the unpaired electron site of the ethyl. Simulated vertical detachment energies of 3.59eV and 4.53eV were found to be in agreement with the experimental results.

Impact of water on the BrO + HO2 gas-phase reaction: mechanism, kinetics and products

The BrO + HO2 reaction, which participates in the cycle of ozone removal via BrOH formation, was explored both in the absence and in the presence of water using ab initio calculations. Two main sets of products, (i) HBr + O3 and (ii) BrOH + O2, are formed regardless of the presence of water, following a hydrogen abstraction mechanism. The HBr + O3 products are formed from the intermediate BrOOOH adduct, whereas BrOH + O2 are formed either from the intermediate OBrOOH adduct or via a barrierless hydrogen transfer from HO2 to BrO. Owing to the formation of molecular oxygen that can bear different spin configurations, the formation of BrOH + O2 products was examined both on the singlet and the triplet surfaces. Under relevant atmospheric temperatures and pressure, the formation of products (i) is energetically and kinetically less favorable than that of products (ii). The rate coefficient at 298 K for the HBr + O3 formation was determined to be 2.00 × 10-20 cm3 molecule-1 s-1, and found to decrease by 1-2 orders of magnitude when one or both reactants are clustered with water. For the formation of BrOH + O2, a rate coefficient of 2.21 × 10-11 cm3 molecule-1 s-1 is determined on both singlet and triplet surfaces in the absence of water. Though this rate coefficient slightly decreases for the hydrated reactions, the fractions of the reactants that are effectively complexed with water are not high enough to shift the overall BrOH + O2 formation rate. The current study further indicates that humidity plays a negligible role in ozone removal via the BrO + HO2 reaction.

Proton transfer from pinene stabilizes water clusters

Molecular beams experiments and ab initio theory reveal indirect formation of protonated water clusters by ionization of pinene.

Effects of water vapor on the reaction of CH2OO with NH3

A strong synergic effect of water and ammonia molecules may enhance the formation of H₂NCH₂OOH.

The Role of (H₂O)1-2 in the CH₂O + ClO Gas-Phase Reaction

Mechanism and kinetic studies have been carried out to investigate whether one and two water molecules could play a possible catalytic role on the CH₂O + ClO reaction. Density functional theory combined with the coupled cluster theory were employed to explore the potential energy surface and the thermodynamics of this radical-molecule reaction. The reaction proceeded through four different paths without water and eleven paths with water, producing H + HCO(O)Cl, Cl + HC(O)OH, HCOO + HCl, and HCO + HOCl. Results indicate that the formation of HCO + HOCl is predominant both in the water-free and water-involved cases. In the absence of water, all the reaction paths proceed through the formation of a transition state, while for some reactions in the presence of water, the products were directly formed via barrierless hydrogen transfer. The rate constant for the formation of HCO + HOCl without water is 2.6 × 10-16 cm³ molecule-1 s-1 at 298.15 K. This rate constant is decreased by 9-12 orders of magnitude in the presence of water. The current calculations hence demonstrate that the CH₂O + ClO reaction is impeded by water.

First-order symmetry-adapted perturbation theory for multiplet splittings

We present a symmetry-adapted perturbation theory (SAPT) for the interaction of two high-spin open-shell molecules (described by their restricted open-shell Hartree-Fock determinants) resulting in low-spin states of the complex. The previously available SAPT formalisms, except for some system-specific studies for few-electron complexes, were restricted to the high-spin state of the interacting system. Thus, the new approach provides, for the first time, a SAPT-based estimate of the splittings between different spin states of the complex. We have derived and implemented the lowest-order SAPT term responsible for these splittings, that is, the first-order exchange energy. We show that within the so-called S² approximation commonly used in SAPT (neglecting effects that vanish as fourth or higher powers of intermolecular overlap integrals), the first-order exchange energies for all multiplets are linear combinations of two matrix elements: a diagonal exchange term that determines the spin-averaged effect and a spin-flip term responsible for the splittings between the states. The numerical factors in this linear combination are determined solely by the Clebsch-Gordan coefficients: accordingly, the S² approximation implies a Heisenberg Hamiltonian picture with a single coupling strength parameter determining all the splittings. The new approach is cast into both molecular-orbital and atomic-orbital expressions: the latter enable an efficient density-fitted implementation. We test the newly developed formalism on several open-shell complexes ranging from diatomic systems (Li⋯H, Mn⋯Mn, …) to the phenalenyl dimer.

Atmospherically Relevant Radicals Derived from the Oxidation of Dimethyl Sulfide

The large number and amounts of volatile organosulfur compounds emitted to the atmosphere and the enormous variety of their reactions in various oxidation states make experimental measurements of even a small fraction of them a daunting task. Dimethyl sulfide (DMS) is a product of biological processes involving marine phytoplankton, and it is estimated to account for approximately 60% of the total natural sulfur gases released to the atmosphere. Ocean-emitted DMS has been suggested to play a role in atmospheric aerosol formation and thereby cloud formation. The reaction of ·OH with DMS is known to proceed by two independent channels: abstraction and addition. The oxidation of DMS is believed to be initiated by the reaction with ·OH and NO₃· radicals, which eventually leads to the formation of sulfuric acid (H₂SO₄) and methanesulfonic acid (CH₃SO₃H). The reaction of DMS with NO₃· appears to proceed exclusively by hydrogen abstraction. The oxidation of DMS consists of a complex sequence of reactions. Depending on the time of the day or altitude, it may take a variety of pathways. In general, however, the oxidation proceeds via chains of radical reactions. Dimethyl sulfoxide (DMSO) has been reported to be a major product of the addition channel. Dimethyl sulfone (DMSO₂), SO₂, CH₃SO₃H, and methanesulfinic acid (CH₃S(O)OH) have been observed as products of further oxidation of DMSO. Understanding the details of DMS oxidation requires in-depth knowledge of the elementary steps of this seemingly simple transformation, which in turn requires a combination of experimental and theoretical methods. The methylthiyl (CH₃S·), methylsulfinyl (CH₃SO·), methylsulfonyl (CH₃SO₂·), and methylsulfonyloxyl (CH₃SO₃·) radicals have been postulated as intermediates in the oxidation of DMS. Therefore, studying the chemistry of sulfur-containing free radicals in the laboratory also is the basis for understanding the mechanism of DMS oxidation in the atmosphere. The application of matrix-isolation techniques in combination with quantum-mechanical calculations on the generation and structural elucidation of CH₃SO_x (x = 0-3) radicals is reviewed in the present Account. Experimental matrix IR and UV/vis data for all known species of this substance class are summarized together with data obtained using other spectroscopic techniques, including time-resolved spectroscopy, electron paramagnetic resonance spectroscopy, and others. We also discuss the reactivity and experimental characterization of these species to illustrate their practical relevance and highlight spectroscopic techniques available for the elucidation of their geometric and electronic structures. The present Account summarizes recent results regarding the preparation, characterization, and reactivity of various radical species with the formula CH₃SO_x (x = 0-3).

Water catalysis of the reaction between hydroxyl radicals and linear saturated alcohols (ethanol and n-propanol) at 294 K

Water accelerates the title reaction by lowering the energy barrier and increasing the dipole moments of the reactants.

Theoretical Study of ClOO + NO Reaction: Mechanism and Kinetics

Theoretical investigations are performed on mechanism and kinetics of the reaction of halogen peroxy radical ClOO with NO radical. The electronic structure information for both of the singlet and triplet potential energy surfaces (PESs) is obtained at the MP2/6-311 + G(2df) level of theory, and the single-point energies are refined by the CCSD(T)/6-311 + G(2df) level. The rate constants for various product channels of the reaction in the pressure range of 1-7600 Torr are predicted. The main results are as follows: On the singlet surface, the addition-elimination mechanism is the most important. First, the N atom of the NO radical can attack the O atom of the ClOO radical to form an energy-riched intermediate IM1 ClOONOtp (21.3 kcal/mol) barrierlessly, then IM1 could isomerizes to IM2 ClOONOcp (22.1 kcal/mol) via a low energy barrier. Both IM1 and IM2 can dissociate to the primary product P₁ ClNO + ¹O₂ and the secondary product P₂ ClO + NO₂. On the triplet surface, the direct Cl-abstraction reaction is the most feasible pathway. The Cl-abstraction can take place via a van der Waals complex, ³IM1 ONClOO (4.1 kcal/mol), then it fragments readily to give P₁' ClNO + ³O₂ with a small barrier. The kinetic calculations show that at low temperatures, the singlet bimolecular product P₁ is the primary product, while at high temperatures, the triplet product P₁' becomes the primary one; only at high pressures and low temperatures, the unimolecular products IM1 and IM2 can be found with quite small yields. At experimentally measured temperature 213 K, ClNO is the primary product in the whole pressure range, which is consistent with the previous experiment. The present study may be useful for further experimental studies for the title reaction.

Mechanistic investigation of the atmospheric reaction of NH2 with NO2 and study of the catalytic effects of water molecule on kinetic path

The gas-phase reaction mechanism of NO2 with NH2 on the singlet potential energy surface is investigated at the B3LYP, MP2, CCSD(T) and G3B3 levels of calculation in connection with the 6-311[Formula: see text]G(3df, 3pd) basis sets. Seven different kinds of products have been obtained. The results reveal that P7 [N2[Formula: see text]2O] is the main product in thermodynamic viewpoint with the Gibbs free energy of [Formula: see text][Formula: see text]kcal/mol. The product P2 due to less number of transition states and low level barrier height of transition states is introduced as the kinetic product. The calculation of rate constants in different temperatures confirms our predication for P7 adduct in comparison with other products. In the first step, the reactions without catalytic effects are considered. All of these reactions begin with pre-reactive collision complex CR [NO2–NH2]. This complex has been produced from barrier-less process via collision of reactants. From variation of bond lengths and angles or dissociation of this complex, other species are produced. In the second step, the catalytic effect of water and water dimer molecules on the reaction rate of kinetic path, P2, have been attended. Calculation of the rate constant was done in the temperature range from 500[Formula: see text]K to 3000[Formula: see text]K. Our results showed that the rate constant of path P2 increases with temperature and the number of water molecules. So, we can conclude that the number of water molecules corresponding to relative humidity of atmosphere has catalytic effect on the mentioned reaction rate.

Does a Nitrogen Lone Pair Lead to Two Centered-Three Electron (2c-3e) Interactions in Pyridyl Radical Isomers?

Each of the three isomeric pyridyl radicals (2-, 3-, and 4-dehydropyridines) contains a lone pair and an unpaired electron. As a result, a potential two centered-three electron interaction between the radical electron and the lone pair through-space (TS) and/or through-bond (TB) can exist that may influence the stability of the radicals. Due to the change in geometrical positions relative to each other, the strength of interaction can be varied. In this study, we investigated the structural and stability aspects of pyridyl radical isomers with a major emphasis on the interaction of a nitrogen lone pair with the radical center. In order to obtain evidence for such interactions, protonated and N-oxide analogues of the corresponding isomeric pyridyl radicals have been considered in such a way to understand the consequences due to unavailability of the lone pair. Similarly, electron attachment and detachment energies at the radical center (vertical detachment energy, VDE, of corresponding anions and vertical ionization energy, VIE, of radical isomers) have been calculated to find out the interaction trend upon modification at the radical center. Different levels of theory including (U)B3LYP/cc-pVTZ, (U)M06/cc-pVTZ, CBS-QB3, single-point energy calculations at (U)CCSD(T)/cc-pVTZ, and multireference CASSCF/cc-pVTZ methods have been employed in this regard. A closer inspection of geometries, relative stability order, spin density, electrostatic potential, molecular orbitals, NBO analysis, and vibrational analysis have showed a strong and stabilizing TS interaction between the radical center and the lone pair in the case of the 2-pyridyl radical. On the other hand, the 4-pyridyl radical showed stabilizing interactions only via TB coupling, whereas the TS interaction is nonexistent. Despite the presence of both interactions in the case of the 3-pyridyl radical, their overall influence is less effective toward stability.

Hydrogen bonding in the hydroxysulfinyl radical-formic acid-water system: A theoretical study

Quantum chemical methods have been employed to evaluate the possible configurations of the 1:1 and 1:2 HOSO-formic acid complexes and 1:1:1 HOSO-formic acid-water complexes. The first type of complex involves two H bonds, while the other two types comprise three H bonds in a ring. The complexes are relatively stable, with CBS-QB3 computed binding energies of 14.3 kcal mol(-1) , 23.4 kcal mol(-1) , and 21.1 kcal mol(-1) for the lowest-energy structures of the 1:1, 1:2, and 1:1:1 complexes, respectively. Complex formations induce a large spectral red-shift and an enhancement of the IR intensity for the H-bonded OH stretching modes relative to those in the parent monomers. TDDFT calculations of the low-lying electronic excited states demonstrate that the complexes are photochemically quite stable in the troposphere. Small spectral shifts in comparison to the free HOSO radical suggest that the radical and the complexes would not be easily distinguishable using standard UV/vis absorption spectroscopy. © 2016 Wiley Periodicals, Inc.

Analytic ab initio-based molecular interaction potential for the BrO⋅H2O complex

Radical halogen oxide species play important roles within atmospheric processes, specifically those responsible for the removal of O3. To facilitate future investigations on this family of compounds, RCCSD(T)/aug-cc-pVQZ-level electronic structure calculations were employed to generate individual-molecule optimized geometries, as well as to determine the global minimum energy structure for the BrO⋅H2O complex. This information facilitated the generation of several one-dimensional potential energy surface (PES) scans for the BrO⋅H2O complex. Scans were performed for both the ground state and the first excited state; this inclusion is due to a low-lying first electronic excited-state energy. These rigid-geometry PES scans were used both to generate a novel analytic interaction potential by modifying the existing Thole-type model used for water and to the fitted potential function. This interaction potential features anisotropic atomic polarizabilities facilitating appropriate modeling of the physics regarding the unpaired electron residing within the p-orbitals of the oxygen atom of the bromine oxide radical. The intention of this work is to facilitate future molecular dynamics simulations involving the interaction between the BrO radical and water clusters as a first step in devising possible novel chemistries taking place at the water interface of clouds within the atmosphere.

Acetic acid-water complex: The first observation of structures containing the higher-energy acetic acid conformer

Non-covalent interaction of acetic acid (AA) and water is studied experimentally by IR spectroscopy in a nitrogen matrix and theoretically at the MP2 and coupled-cluster with single and double and perturbative triple excitations [CCSD(T)]/6-311++G(2d,2p) levels of theory. This work is focused on the first preparation and characterization of complexes of higher-energy (cis) conformer of AA with water. The calculations show three 1:1 structures for the trans-AA⋯H2O complexes and three 1:1 structures for the cis-AA⋯H2O complexes. Two trans-AA⋯H2O and two cis-AA⋯H2O complexes are found and structurally assigned in the experiments. The two cis-AA⋯ ⋅ H2O complexes are obtained by annealing of a matrix containing water and cis-AA molecules prepared by selective vibrational excitation of the ground-state trans form. The less stable trans-AA⋯H2O complex is obtained by vibrational excitation of the less stable cis-AA⋯H2O complex. In addition, the 1:2 complexes of trans-AA and cis-AA with water molecules are studied computationally and the most stable forms of the 1:2 complexes are experimentally identified.

Accurate thermodynamic properties of gas phase hydrogen bonded complexes

The increase in temperature causes a decrease in equilibrium constant, which makes accurate determination of the enthalpy of complex formation possible.

Proton transfer in acetaldehyde–water clusters mediated by a single water molecule

Bridging molecules: a single water molecule enhances the stability of symmetric acetaldehyde water clusters, and acts as a bridge for the transport of a proton between two acetaldehyde molecules.

Active Site Dynamical Effects in the Hydrogen Transfer Rate-limiting Step in the Catalysis of Linoleic Acid by Soybean Lipoxygenase-1 (SLO-1): Primary and Secondary Isotope Contributions

Using ab initio molecular dynamics (AIMD) simulations that facilitate the treatment of rare events, we probe the active site participation in the rate-determining hydrogen transfer step in the catalytic oxidation of linoleic acid by soybean lipoxygenase-1 (SLO-1). The role of two different active site components is probed. (a) On the hydrogen atom acceptor side of the active site, the hydrogen bonding propensity between the acceptor side hydroxyl group, which is bound to the iron cofactor, and the backbone carboxyl group of isoleucine (residue number 839) is studied toward its role in promoting the hydrogen transfer event. Primary and secondary (H/D) isotope effects are also probed and a definite correlation with subtle secondary H/D isotope effects is found. With increasing average nuclear kinetic energy, the increase in transfer probability is enhanced due to the presence of the hydrogen bond between the backbone carbonyl of I839 and the acceptor oxygen. Further increase in average nuclear kinetic energy reduces the strength of this secondary hydrogen bond which leads to a deterioration in hydrogen transfer rates and finally embrances an Arrhenius-like behavior. (b) On the hydrogen atom donor side, the coupling between vibrational modes predominantly localized on the donor-side linoleic acid group and the reactive mode is probed. There appears to be a qualitative difference in the coupling between modes that belong to linoleic acid and the hydrogen transfer mode, for hydrogen and deuterium transfer. For example, the donor side secondary hydrogen atom is much more labile (by nearly a factor of 5) during deuterium transfer as compared to the case for hydrogen transfer. This appears to indicate a greater coupling between the modes belonging to the linoleic acid scaffold and the deuterium transfer mode and also provides a new rationalization for the abnormal (nonclassical) secondary isotope effect results obtained by Knapp, Rickert, and Klinman in J. Am. Chem. Soc. , 2002 , 124 , 3865 . To substantiate our findings noted in point a above, we have suggested an I839 → A839 or I839 → V839 mutation. This will modify the bulkiness of hydrogen the bonding residue, allowing greater flexibility in the secondary hydrogen bond formation highlighted above and adversely affecting the reaction rate.

Matrix-isolation studies of noncovalent interactions: more sophisticated approaches

Noncovalent interactions are crucial for many physical, chemical, and biological phenomena. Matrix isolation is a powerful method to study noncovalent interactions, including hydrogen-bonded species, and it has been extensively used in this field. However, there are difficult situations, such as in the case of species that are impossible to prepare in the gas phase. In this article, we describe some advanced approaches allowing studies of complexes that are problematic for the traditional methods. Photolysis of a suitable precursor in a matrix can lead to a large concentration of 1:1 complexes, which are otherwise very difficult to prepare (e.g., the H2O···O complex). Photolysis of species combined with annealing can lead to complexes of molecules with mobile atoms (e.g., the same H2O···O complex). Simultaneous photolysis of two species combined with annealing can produce complexes of radicals via reactions of the photogenerated complexes with mobile atoms (e.g., the H2O···HCO complex). Interaction of noble-gas (Ng) hydrides with other species is another topic (e.g., the N2···HArF complex) and very large blue shifts of the H-Ng stretching modes are normally observed for these systems. Complexes and dimers of the higher-energy conformer of formic acid have been prepared by using selective vibrational excitation of the ground-state conformer. The higher-energy conformer of formic acid can be efficiently stabilized in the complexes with strong hydrogen bonding. We also consider some problematic cases when the changes in the vibrational frequencies of the 1:1 complexes are very small (e.g., the phenol···Xe complex) and when the complex formation is prevented by strong solvation in the matrix (e.g., species in solid xenon).