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Tran KN, Faries KM, Magdaong NCM, Mathews II, Weaver JB, Kirsh JM, Holten D, Kirmaier C, Boxer SG. Application of Amber Suppression To Study the Role of Tyr M210 in Electron Transfer in Rhodobacter sphaeroides Photosynthetic Reaction Centers. J Phys Chem B 2025; 129:3317-3333. [PMID: 40134359 DOI: 10.1021/acs.jpcb.5c00082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2025]
Abstract
The initial light-induced electron transfer (ET) steps in the bacterial photosynthetic reaction center (RC) have been extensively studied and provide a paradigm for connecting structure and function. Although RCs have local pseudo-C2 symmetry, ET only occurs along the A branch of chromophores. Tyrosine M210 is a key symmetry-breaking residue adjacent to bacteriochlorophyll BA that bridges the primary electron donor P and the bacteriopheophytin acceptor HA. We used amber suppression to incorporate phenylalanine variants with different electron-withdrawing/-donating capabilities at the position M210. X-ray data generally reveal no appreciable structural changes due to the mutations. P* decay and P+HA- formation are multiexponential (∼2 to 9, ∼10 to 60, and ∼100 to 300 ps) and temperature dependent. The 1020 nm transient-absorption band of P+BA- is barely resolved for a few variants at 295 K and for none at 77 K. The results indicate a change from two-step ET for wild-type RCs to the dominance of one-step superexchange ET for the mutants. Resonance Stark spectroscopy reveals that the free energy of P+BA- changes by -57 to +66 meV among the phenylalanine variants. Because P+BA- apparently lies above P* in all phenylalanine variants, the perturbations primarily affect the energy denominator for superexchange mixing. The findings deepen insight into primary ET in the bacterial RC.
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Affiliation(s)
- Khoi N Tran
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Kaitlyn M Faries
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | | | - Irimpan I Mathews
- Stanford Synchrotron Radiation Lightsource, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Jared B Weaver
- Drug Discovery, Insitro, Inc., 279 E. Grand Ave., South San Francisco, California 94080, United States
| | - Jacob M Kirsh
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Steven G Boxer
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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2
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Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc Natl Acad Sci U S A 2021; 118:2116439118. [PMID: 34907018 DOI: 10.1073/pnas.2116439118] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2021] [Indexed: 11/18/2022] Open
Abstract
Photosynthetic reaction centers (RCs) from Rhodobacter sphaeroides were engineered to vary the electronic properties of a key tyrosine (M210) close to an essential electron transfer component via its replacement with site-specific, genetically encoded noncanonical amino acid tyrosine analogs. High fidelity of noncanonical amino acid incorporation was verified with mass spectrometry and X-ray crystallography and demonstrated that RC variants exhibit no significant structural alterations relative to wild type (WT). Ultrafast transient absorption spectroscopy indicates the excited primary electron donor, P*, decays via a ∼4-ps and a ∼20-ps population to produce the charge-separated state P+HA - in all variants. Global analysis indicates that in the ∼4-ps population, P+HA - forms through a two-step process, P*→ P+BA -→ P+HA -, while in the ∼20-ps population, it forms via a one-step P* → P+HA - superexchange mechanism. The percentage of the P* population that decays via the superexchange route varies from ∼25 to ∼45% among variants, while in WT, this percentage is ∼15%. Increases in the P* population that decays via superexchange correlate with increases in the free energy of the P+BA - intermediate caused by a given M210 tyrosine analog. This was experimentally estimated through resonance Stark spectroscopy, redox titrations, and near-infrared absorption measurements. As the most energetically perturbative variant, 3-nitrotyrosine at M210 creates an ∼110-meV increase in the free energy of P+BA - along with a dramatic diminution of the 1,030-nm transient absorption band indicative of P+BA - formation. Collectively, this work indicates the tyrosine at M210 tunes the mechanism of primary electron transfer in the RC.
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3
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Mechanism of the formation of proton transfer pathways in photosynthetic reaction centers. Proc Natl Acad Sci U S A 2021; 118:2103203118. [PMID: 34301911 PMCID: PMC8325351 DOI: 10.1073/pnas.2103203118] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The crystal structures of photosynthetic reaction centers from purple bacteria (PbRCs) and photosystem II show large structural similarity. However, the proposed mechanisms of proton transfer toward the terminal electron acceptor quinone (QB) are not consistent. In particular, not His-L190, which is an H-bond partner of QB, but rather Glu-L212, which is ∼6 Å away from QB, was assumed to be the direct proton donor for QB. We demonstrate that the H-bond between His-L190 and QB is a low-barrier H-bond, which facilitates proton transfer from singly protonated His-L190 to QB. Furthermore, Glu-L212 is not a direct H-bond donor for QB. However, it facilitates proton transfer toward deprotonated His-L190 via water molecules after QBH2 forms and leaves the PbRC. In photosynthetic reaction centers from purple bacteria (PbRCs) from Rhodobacter sphaeroides, the secondary quinone QB accepts two electrons and two protons via electron-coupled proton transfer (PT). Here, we identify PT pathways that proceed toward the QB binding site, using a quantum mechanical/molecular mechanical approach. As the first electron is transferred to QB, the formation of the Grotthuss-like pre-PT H-bond network is observed along Asp-L213, Ser-L223, and the distal QB carbonyl O site. As the second electron is transferred, the formation of a low-barrier H-bond is observed between His-L190 at Fe and the proximal QB carbonyl O site, which facilitates the second PT. As QBH2 leaves PbRC, a chain of water molecules connects protonated Glu-L212 and deprotonated His-L190 forms, which serves as a pathway for the His-L190 reprotonation. The findings of the second pathway, which does not involve Glu-L212, and the third pathway, which proceeds from Glu-L212 to His-L190, provide a mechanism for PT commonly used among PbRCs.
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4
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Tamura H, Saito K, Ishikita H. The origin of unidirectional charge separation in photosynthetic reaction centers: nonadiabatic quantum dynamics of exciton and charge in pigment-protein complexes. Chem Sci 2021; 12:8131-8140. [PMID: 34194703 PMCID: PMC8208306 DOI: 10.1039/d1sc01497h] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 05/03/2021] [Indexed: 11/21/2022] Open
Abstract
Exciton charge separation in photosynthetic reaction centers from purple bacteria (PbRC) and photosystem II (PSII) occurs exclusively along one of the two pseudo-symmetric branches (active branch) of pigment-protein complexes. The microscopic origin of unidirectional charge separation in photosynthesis remains controversial. Here we elucidate the essential factors leading to unidirectional charge separation in PbRC and PSII, using nonadiabatic quantum dynamics calculations in conjunction with time-dependent density functional theory (TDDFT) with the quantum mechanics/molecular mechanics/polarizable continuum model (QM/MM/PCM) method. This approach accounts for energetics, electronic coupling, and vibronic coupling of the pigment excited states under electrostatic interactions and polarization of whole protein environments. The calculated time constants of charge separation along the active branches of PbRC and PSII are similar to those observed in time-resolved spectroscopic experiments. In PbRC, Tyr-M210 near the accessary bacteriochlorophyll reduces the energy of the intermediate state and drastically accelerates charge separation overcoming the electron-hole interaction. Remarkably, even though both the active and inactive branches in PSII can accept excitons from light-harvesting complexes, charge separation in the inactive branch is prevented by a weak electronic coupling due to symmetry-breaking of the chlorophyll configurations. The exciton in the inactive branch in PSII can be transferred to the active branch via direct and indirect pathways. Subsequently, the ultrafast electron transfer to pheophytin in the active branch prevents exciton back transfer to the inactive branch, thereby achieving unidirectional charge separation.
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Affiliation(s)
- Hiroyuki Tamura
- Department of Applied Chemistry, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8654 Japan
- Research Center for Advanced Science and Technology, The University of Tokyo 4-6-1 Komaba, Meguro-ku Tokyo 153-8904 Japan
| | - Keisuke Saito
- Department of Applied Chemistry, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8654 Japan
- Research Center for Advanced Science and Technology, The University of Tokyo 4-6-1 Komaba, Meguro-ku Tokyo 153-8904 Japan
| | - Hiroshi Ishikita
- Department of Applied Chemistry, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8654 Japan
- Research Center for Advanced Science and Technology, The University of Tokyo 4-6-1 Komaba, Meguro-ku Tokyo 153-8904 Japan
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5
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Acquirement of water-splitting ability and alteration of the charge-separation mechanism in photosynthetic reaction centers. Proc Natl Acad Sci U S A 2020; 117:16373-16382. [PMID: 32601233 PMCID: PMC7368266 DOI: 10.1073/pnas.2000895117] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Abstract
In photosynthetic reaction centers from purple bacteria (PbRC) and the water-oxidizing enzyme, photosystem II (PSII), charge separation occurs along one of the two symmetrical electron-transfer branches. Here we report the microscopic origin of the unidirectional charge separation, fully considering electron-hole interaction, electronic coupling of the pigments, and electrostatic interaction with the polarizable entire protein environments. The electronic coupling between the pair of bacteriochlorophylls is large in PbRC, forming a delocalized excited state with the lowest excitation energy (i.e., the special pair). The charge-separated state in the active branch is stabilized by uncharged polar residues in the transmembrane region and charged residues on the cytochrome c 2 binding surface. In contrast, the accessory chlorophyll in the D1 protein (ChlD1) has the lowest excitation energy in PSII. The charge-separated state involves ChlD1 •+ and is stabilized predominantly by charged residues near the Mn4CaO5 cluster and the proceeding proton-transfer pathway. It seems likely that the acquirement of water-splitting ability makes ChlD1 the initial electron donor in PSII.
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6
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Kawashima K, Ishikita H. Energetic insights into two electron transfer pathways in light-driven energy-converting enzymes. Chem Sci 2018; 9:4083-4092. [PMID: 29780537 PMCID: PMC5944228 DOI: 10.1039/c8sc00424b] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Accepted: 03/28/2018] [Indexed: 11/21/2022] Open
Abstract
We report Em values of (bacterio-)chlorophylls for one-electron reduction in both electron-transfer branches of PbRC, PSI, and PSII.
We report redox potentials (Em) for one-electron reduction for all chlorophylls in the two electron-transfer branches of water-oxidizing enzyme photosystem II (PSII), photosystem I (PSI), and purple bacterial photosynthetic reaction centers (PbRC). In PSI, Em values for the accessory chlorophylls were similar in both electron-transfer branches. In PbRC, the corresponding Em value was 170 mV less negative in the active L-branch (BL) than in the inactive M-branch (BM), favoring BL˙– formation. This contrasted with the corresponding chlorophylls, ChlD1 and ChlD2, in PSII, where Em(ChlD1) was 120 mV more negative than Em(ChlD2), implying that to rationalize electron transfer in the D1-branch, ChlD1 would need to serve as the primary electron donor. Residues that contributed to Em(ChlD1) < Em(ChlD2) simultaneously played a key role in (i) releasing protons from the substrate water molecules and (ii) contributing to the larger cationic population on the chlorophyll closest to the Mn4CaO5 cluster (PD1), favoring electron transfer from water molecules. These features seem to be the nature of PSII, which needs to possess the proton-exit pathway to use a protonated electron source—water molecules.
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Affiliation(s)
- Keisuke Kawashima
- Department of Applied Chemistry , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8654 , Japan .
| | - Hiroshi Ishikita
- Department of Applied Chemistry , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8654 , Japan . .,Research Center for Advanced Science and Technology , The University of Tokyo , 4-6-1 Komaba, Meguro-ku , Tokyo 153-8904 , Japan . ; Tel: +81-3-5452-5056
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7
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Jankowiak R, Rancova O, Chen J, Kell A, Saer RG, Beatty JT, Abramavicius D. Mutation-Induced Changes in the Protein Environment and Site Energies in the (M)L214G Mutant of the Rhodobacter sphaeroides Bacterial Reaction Center. J Phys Chem B 2016; 120:7859-71. [PMID: 27458891 DOI: 10.1021/acs.jpcb.6b06151] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This work focuses on the low-temperature (5 K) photochemical (transient) hole-burned (HB) spectra within the P870 absorption band, and their theoretical analysis, for the (M)L214G mutant of the photosynthetic Rhodobacter sphaeroides bacterial reaction center (bRC). To provide insight into system-bath interactions of the bacteriochlorophyll a (BChl a) special pair, i.e., P870, in the mutated bRC, the optical line shape function for the P870 band is calculated numerically. On the basis of the modeling studies, we demonstrate that (M)L214G mutation leads to a heterogeneous population of bRCs with modified (increased) total electron-phonon coupling strength of the special pair BChl a and larger inhomogeneous broadening. Specifically, we show that after mutation in the (M)L214G bRC a large fraction (∼50%) of the bacteriopheophytin (HA) chromophores shifts red and the 800 nm absorption band broadens, while the remaining fraction of HA cofactors retains nearly the same site energy as HA in the wild-type bRC. Modeling using these two subpopulations allowed for fits of the absorption and nonresonant (transient) HB spectra of the mutant bRC in the charge neutral, oxidized, and charge-separated states using the Frenkel exciton Hamiltonian, providing new insight into the mutant's complex electronic structure. Although the average (M)L214G mutant quantum efficiency of P(+)QA(-) state formation seems to be altered in comparison with the wild-type bRC, the average electron transfer time (measured via resonant transient HB spectra within the P870 band) was not affected. Thus, mutation in the vicinity of the electron acceptor (HA) does not tune the charge separation dynamics. Finally, quenching of the (M)L214G mutant excited states by P(+) is addressed by persistent HB spectra burned within the B band in chemically oxidized samples.
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Affiliation(s)
| | - Olga Rancova
- Department of Theoretical Physics, Vilnius University , 10222 Vilnius, Lithuania
| | | | | | - Rafael G Saer
- Department of Microbiology and Immunology, University of British Columbia , Vancouver, BC V6T 1Z3, Canada
| | - J Thomas Beatty
- Department of Microbiology and Immunology, University of British Columbia , Vancouver, BC V6T 1Z3, Canada
| | - Darius Abramavicius
- Department of Theoretical Physics, Vilnius University , 10222 Vilnius, Lithuania
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8
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Dylla NP, Faries KM, Wyllie RM, Swenson AM, Hanson DK, Holten D, Kirmaier C, Laible PD. Species differences in unlocking B‐side electron transfer in bacterial reaction centers. FEBS Lett 2016; 590:2515-26. [DOI: 10.1002/1873-3468.12264] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2016] [Accepted: 06/13/2016] [Indexed: 11/09/2022]
Affiliation(s)
| | | | - Ryan M. Wyllie
- Biosciences Division Argonne National Laboratory Lemont IL USA
| | | | | | - Dewey Holten
- Department of Chemistry Washington University St. Louis MO USA
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9
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Beyer SR, Müller L, Southall J, Cogdell RJ, Ullmann GM, Köhler J. The open, the closed, and the empty: time-resolved fluorescence spectroscopy and computational analysis of RC-LH1 complexes from Rhodopseudomonas palustris. J Phys Chem B 2015; 119:1362-73. [PMID: 25526393 DOI: 10.1021/jp510822k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
We studied the time-resolved fluorescence of isolated RC-LH1 complexes from Rhodopseudomonas palustris as a function of the photon fluence and the repetition rate of the excitation laser. Both parameters were varied systematically over 3 orders of magnitude. On the basis of a microstate description we developed a quantitative model for RC-LH1 and obtained very good agreement between experiments and elaborate simulations based on a global master equation approach. The model allows us to predict the relative population of RC-LH1 complexes with the special pair in the neutral state or in the oxidized state P(+) and those complexes that lack a reaction center.
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Affiliation(s)
- Sebastian R Beyer
- Experimental Physics IV and Bayreuther Institut für Makromolekülforschung (BIMF), University of Bayreuth , 95440 Bayreuth, Germany
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10
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Saggu M, Carter B, Zhou X, Faries K, Cegelski L, Holten D, Boxer SG, Kirmaier C. Putative hydrogen bond to tyrosine M208 in photosynthetic reaction centers from Rhodobacter capsulatus significantly slows primary charge separation. J Phys Chem B 2014; 118:6721-32. [PMID: 24902471 PMCID: PMC4064694 DOI: 10.1021/jp503422c] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
![]()
Slow, ∼50
ps, P* → P+HA– electron
transfer is observed in Rhodobacter
capsulatus reaction centers (RCs) bearing the native
Tyr residue at M208 and the single amino acid change of isoleucine
at M204 to glutamic acid. The P* decay kinetics are unusually homogeneous
(single exponential) at room temperature. Comparative solid-state
NMR of [4′-13C]Tyr labeled wild-type and M204E RCs
show that the chemical shift of Tyr M208 is significantly altered
in the M204E mutant and in a manner consistent with formation of a
hydrogen bond to the Tyr M208 hydroxyl group. Models based on RC crystal
structure coordinates indicate that if such a hydrogen bond is formed
between the Glu at M204 and the M208 Tyr hydroxyl group, the −OH
would be oriented in a fashion expected (based on the calculations
by Alden et al., J. Phys. Chem.1996, 100, 16761–16770) to destabilize P+BA– in free energy. Alteration
of the environment of Tyr M208 and BA by Glu M204 via this
putative hydrogen bond has a powerful influence on primary charge
separation.
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Affiliation(s)
- Miguel Saggu
- Department of Chemistry, Stanford University , Stanford, California 94305-5012, United States
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11
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Gibasiewicz K, Pajzderska M, Potter JA, Fyfe PK, Dobek A, Brettel K, Jones MR. Mechanism of recombination of the P+H(A)- radical pair in mutant Rhodobacter sphaeroides reaction centers with modified free energy gaps between P+B(A)- and P+H(A)-. J Phys Chem B 2011; 115:13037-50. [PMID: 21970763 DOI: 10.1021/jp206462g] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
The kinetics of recombination of the P(+)H(A)(-) radical pair were compared in wild-type reaction centers from Rhodobacter sphaeroides and in seven mutants in which the free energy gap, ΔG, between the charge separated states P(+)B(A)(-) and P(+)H(A)(-) was either increased or decreased. Five of the mutant RCs had been described previously, and X-ray crystal structures of two newly constructed complexes were determined by X-ray crystallography. The charge recombination reaction was accelerated in all mutants with a smaller ΔG than in the wild-type, and was slowed in a mutant having a larger ΔG. The free energy difference between the state P(+)H(A)(-) and the PH(A) ground state was unaffected by most of these mutations. These observations were consistent with a model in which the P(+)H(A)(-) → PH(A) charge recombination is thermally activated and occurs via the intermediate state P(+)B(A)(-), with a mean rate related to the size of the ΔG between the states P(+)B(A)(-) and P(+)H(A)(-) and not the ΔG between P(+)H(A)(-) and the ground state. A more detailed analysis of charge recombination in the mutants showed that the kinetics of the reaction were multiexponential, and characterized by ~0.5, ~1-3, and 7-17 ns lifetimes, similar to those measured for wild-type reaction centers. The exact lifetimes and relative amplitudes of the three components were strongly modulated by the mutations. Two models were considered in order to explain the observed multiexponentiality and modulation, involving heterogeneity or relaxation of P(+)H(A)(-) states, with the latter model giving a better fit to the experimental results.
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Collins AM, Kirmaier C, Holten D, Blankenship RE. Kinetics and energetics of electron transfer in reaction centers of the photosynthetic bacterium Roseiflexus castenholzii. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2010; 1807:262-9. [PMID: 21126505 DOI: 10.1016/j.bbabio.2010.11.011] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2010] [Revised: 11/18/2010] [Accepted: 11/19/2010] [Indexed: 10/18/2022]
Abstract
The kinetics and thermodynamics of the photochemical reactions of the purified reaction center (RC)-cytochrome (Cyt) complex from the chlorosome-lacking, filamentous anoxygenic phototroph, Roseiflexus castenholzii are presented. The RC consists of L- and M-polypeptides containing three bacteriochlorophyll (BChl), three bacteriopheophytin (BPh) and two quinones (Q(A) and Q(B)), and the Cyt is a tetraheme subunit. Two of the BChls form a dimer P that is the primary electron donor. At 285K, the lifetimes of the excited singlet state, P*, and the charge-separated state P(+)H(A)(-) (where H(A) is the photoactive BPh) were found to be 3.2±0.3 ps and 200±20 ps, respectively. Overall charge separation P*→→ P(+)Q(A)(-) occurred with ≥90% yield at 285K. At 77K, the P* lifetime was somewhat shorter and the P(+)H(A)(-) lifetime was essentially unchanged. Poteniometric titrations gave a P(865)/P(865)(+) midpoint potential of +390mV vs. SHE. For the tetraheme Cyt two distinct midpoint potentials of +85 and +265mV were measured, likely reflecting a pair of low-potential hemes and a pair of high-potential hemes, respectively. The time course of electron transfer from reduced Cyt to P(+) suggests an arrangement where the highest potential heme is not located immediately adjacent to P. Comparisons of these and other properties of isolated Roseiflexus castenholzii RCs to those from its close relative Chloroflexus aurantiacus and to RCs from the purple bacteria are made.
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Affiliation(s)
- Aaron M Collins
- Department of Chemistry, Washington University in St. Louis, St. Louis, MO 63130, USA
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13
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Pawlowicz NP, van Stokkum IHM, Breton J, van Grondelle R, Jones MR. An investigation of slow charge separation in a Tyrosine M210 to Tryptophan mutant of the Rhodobacter sphaeroides reaction center by femtosecond mid-infrared spectroscopy. Phys Chem Chem Phys 2010; 12:2693-705. [DOI: 10.1039/b905934b] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Gibasiewicz K, Pajzderska M, Karolczak J, Dobek A. Excitation and electron transfer in reaction centers from Rhodobacter sphaeroides probed and analyzed globally in the 1-nanosecond temporal window from 330 to 700 nm. Phys Chem Chem Phys 2009; 11:10484-93. [PMID: 19890535 DOI: 10.1039/b912431d] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Global analysis of a set of room temperature transient absorption spectra of Rhodobacter sphaeroides reaction centers, recorded in wide temporal and spectral ranges and triggered by femtosecond excitation of accessory bacteriochlorophylls at 800 nm, is presented. The data give a comprehensive review of all spectral dynamics features in the visible and near UV, from 330 to 700 nm, related to the primary events in the Rb. sphaeroides reaction center: excitation energy transfer from the accessory bacteriochlorophylls (B) to the primary donor (P), primary charge separation between the primary donor and primary acceptor (bacteriopheophytin, H), and electron transfer from the primary to the secondary electron acceptor (ubiquinone). In particular, engagement of the accessory bacteriochlorophyll in primary charge separation is shown as an intermediate electron acceptor, and the initial free energy gap of approximately 40 meV, between the states P(+)B(A)(-) and P(+)H(A)(-) is estimated. The size of this gap is shown to be constant for the whole 230 ps lifetime of the P(+)H(A)(-) state. The ultrafast spectral dynamics features recorded in the visible range are presented against a background of results from similar studies performed for the last two decades.
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Affiliation(s)
- K Gibasiewicz
- Department of Physics, Adam Mickiewicz University, ul. Umultowska 85, 61-614 Poznań, Poland.
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15
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Williams JC, Allen JP. Directed Modification of Reaction Centers from Purple Bacteria. THE PURPLE PHOTOTROPHIC BACTERIA 2009. [DOI: 10.1007/978-1-4020-8815-5_18] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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16
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Mechanism of Charge Separation in Purple Bacterial Reaction Centers. THE PURPLE PHOTOTROPHIC BACTERIA 2009. [DOI: 10.1007/978-1-4020-8815-5_19] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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17
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Laible PD, Morris ZS, Thurnauer MC, Schiffer M, Hanson DK. Inter- and Intraspecific Variation in Excited-state Triplet Energy Transfer Rates in Reaction Centers of Photosynthetic Bacteria¶. Photochem Photobiol 2007. [DOI: 10.1562/0031-8655(2003)0780114iaivie2.0.co2] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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18
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Bixon M, Jortner J. Electron Transfer-from Isolated Molecules to Biomolecules. ADVANCES IN CHEMICAL PHYSICS 2007. [DOI: 10.1002/9780470141656.ch3] [Citation(s) in RCA: 232] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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19
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Zinth W, Wachtveitl J. The First Picoseconds in Bacterial Photosynthesis?Ultrafast Electron Transfer for the Efficient Conversion of Light Energy. Chemphyschem 2005; 6:871-80. [PMID: 15884069 DOI: 10.1002/cphc.200400458] [Citation(s) in RCA: 129] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
In this Minireview, we describe the function of the bacterial reaction centre (RC) as the central photosynthetic energy-conversion unit by ultrafast spectroscopy combined with structural analysis, site-directed mutagenesis, pigment exchange and theoretical modelling. We show that primary energy conversion is a stepwise process in which an electron is transferred via neighbouring chromophores of the RC. A well-defined chromophore arrangement in a rigid protein matrix, combined with optimised energetics of the different electron carriers, allows a highly efficient charge-separation process. The individual molecular reactions at room temperature are well described by conventional electron-transfer theory.
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Affiliation(s)
- Wolfgang Zinth
- Department für Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany.
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Kirmaier C, Laible PD, Hanson DK, Holten D. B-Side Electron Transfer To Form P+HB- in Reaction Centers from the F(L181)Y/Y(M208)F Mutant of Rhodobacter capsulatus. J Phys Chem B 2004. [DOI: 10.1021/jp0485441] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, and Biosciences Division, Argonne National Laboratory, Argonne, Illinois 60439
| | - Philip D. Laible
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, and Biosciences Division, Argonne National Laboratory, Argonne, Illinois 60439
| | - Deborah K. Hanson
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, and Biosciences Division, Argonne National Laboratory, Argonne, Illinois 60439
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, and Biosciences Division, Argonne National Laboratory, Argonne, Illinois 60439
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21
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Parson WW, Warshel A. Dependence of Photosynthetic Electron-Transfer Kinetics on Temperature and Energy in a Density-Matrix Model. J Phys Chem B 2004. [DOI: 10.1021/jp0495904] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- William W. Parson
- Department of Biochemistry, University of Washington, Box 357350, Seattle, Washington 98195-7350
| | - Arieh Warshel
- Department of Biochemistry, University of Washington, Box 357350, Seattle, Washington 98195-7350
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22
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A density-matrix model of photosynthetic electron transfer with microscopically estimated vibrational relaxation times. Chem Phys 2004. [DOI: 10.1016/j.chemphys.2003.10.006] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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23
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Huppman P, Arlt T, Penzkofer H, Schmidt S, Bibikova M, Dohse B, Oesterhelt D, Wachtveit J, Zinth W. Kinetics, energetics, and electronic coupling of the primary electron transfer reactions in mutated reaction centers of Blastochloris viridis. Biophys J 2002; 82:3186-97. [PMID: 12023243 PMCID: PMC1302108 DOI: 10.1016/s0006-3495(02)75661-0] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
Abstract
Femtosecond spectroscopy in combination with site-directed mutagenesis has been used to study the dynamics of primary electron transfer in native and 12 mutated reaction centers of Blastochloris (B) (formerly called Rhodopseudomonas) viridis. The decay times of the first excited state P* vary at room temperature between of 0.6 and 50 ps, and at low temperatures between 0.25 and 90 ps. These changes in time constants are discussed within the scope of nonadiabatic electron transfer theory using different models: 1) If the mutation is assumed to predominantly influence the energetics of the primary electron transfer intermediates, the analysis of the room temperature data for the first electron transfer step to the intermediate P(+)B(A)(-) yields a reorganization energy lambda = 600 +/- 200 cm(-1) and a free energy gap Delta G ranging from -600 cm(-1) to 800 cm(-1). However, this analysis fails to describe the temperature dependence of the reaction rates. 2) A more realistic description of the temperature dependence of the primary electron transfer requires different values for the energetics and specific variations of the electronic coupling upon mutation. Apparently the mutations also lead to pronounced changes in the electronic coupling, which may even dominate the change in the reaction rate. One main message of the paper is that a simple relationship between mutation and a change in one reaction parameter cannot be given and that at the very least the electronic coupling is changed upon mutation.
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Affiliation(s)
- P Huppman
- Institut für BioMolekulare Optik, Sektion Physik, Ludwig-Maximilians-Universität, D-80538 München, Germany
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24
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Schenkl S, Spörlein S, Müh F, Witt H, Lubitz W, Zinth W, Wachtveitl J. Selective perturbation of the second electron transfer step in mutant bacterial reaction centers. BIOCHIMICA ET BIOPHYSICA ACTA 2002; 1554:36-47. [PMID: 12034469 DOI: 10.1016/s0005-2728(02)00211-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In order to specifically perturb the primary electron acceptor B(A) -- a monomeric bacteriochlorophyll (BChl) a -- involved in bacterial photosynthetic charge separation (CS), the protein environment of B(A) in the reaction center (RC) of Rhodobacter sphaeroides was modified by site-directed mutagenesis. Isolated RCs were characterized by redox titrations, low temperature optical spectroscopy, ENDOR/TRIPLE resonance spectroscopy and femtosecond time-resolved spectroscopy. Two mutations were studied: In the GS(M203) mutant a serine is introduced near the ring E keto group of B(A), while in FY(L146) a phenylalanine near the ring A acetyl group of B(A) is replaced by tyrosine. In all mutations the oxidation potential of the primary electron donor P as well as the electronic structure of both the P(*+) radical cation and the radical anion of the secondary electron acceptor, H(A)(*-), are not significantly altered compared to the wild type (WT), while changes of the optical absorption spectra at 77 K in the BChl Q(X) and Q(Y) regions are observed. The GS(M203) mutation only leads to a minor retardation of the CS reactions at room temperature, whereas for FY(L146) significant deviations from the native electron transfer (ET) rates could be detected: In addition to a faster first (2.9 ps) and a slower second (1 ps) ET step, a new 8-ps time constant was found in the FY(L146) mutant, which can be ascribed to a fraction of RCs with slowed down secondary ET. The results allow us to address the functional role of the acetyl group of B(A) and question the role of the free energy changes as the main determining factor of ET rates in RCs. It is concluded that structural rearrangements alter the electronic coupling between the pigments and thereby influence the rate of fast CS.
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Affiliation(s)
- Selma Schenkl
- Sektion Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 Munich, Germany
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Ivashin N, Larsson S. Vibrational Mechanism for Primary Charge Separation in the Reaction Center of Rhodobacter Sphaeroides. J Phys Chem B 2002. [DOI: 10.1021/jp013431s] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nikolaj Ivashin
- Institute of Molecular and Atomic Physics, National Academy of Sciences, 70 F. Skaryna Avenue, 220072 Minsk, Belarus
| | - Sven Larsson
- Department of Physical Chemistry, Chalmers University of Technology, S-41296 Göteborg, Sweden
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26
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Vullev VI, Jones G. Photoinduced charge transfer in helical polypeptides. RESEARCH ON CHEMICAL INTERMEDIATES 2002. [DOI: 10.1163/15685670260469429] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Roberts JA, Holten D, Kirmaier C. Primary Events in Photosynthetic Reaction Centers with Multiple Mutations near the Photoactive Electron Carriers. J Phys Chem B 2001. [DOI: 10.1021/jp010280k] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- James A. Roberts
- Department of Chemistry, Washington University, St. Louis, Missouri 63130
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri 63130
| | - Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, Missouri 63130
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28
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Abstract
The bacterial reaction centre is undoubtedly one of the most heavily studied electron transfer proteins and, as this article has tried to describe, it has made some unique contributions to our understanding of biological electron transfer and coupled protonation reactions, and has provided fascinating information in areas that concern basic properties such as protein heterogeneity and protein dynamics. Despite intensive study, much remains to be learned about how this protein catalyses the conversion of solar energy into a form that can be used by the cell. In particular, the dynamic roles played by the protein are still poorly understood. The wide range of time-scales over which the reaction centre catalyses electron transfer, and the relative ease with which electron transfer can be triggered and monitored, will ensure that the reaction centre will continue to be used as a laboratory for testing ideas about the nature of biological electron transfer for many years to come.
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Affiliation(s)
- M E van Brederode
- Faculty of Sciences, Division of Physics and Astronomy, Department of Biophysics and Physics of Complex Systems, Free University of Amsterdam, de Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
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Conformational relaxation following reduction of the photoactive bacteriopheophytin in reaction centers from Blastochloris viridis. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2000. [DOI: 10.1016/s0005-2728(00)00147-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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30
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McAuley KE, Fyfe PK, Cogdell RJ, Isaacs NW, Jones MR. X-ray crystal structure of the YM210W mutant reaction centre from Rhodobacter sphaeroides. FEBS Lett 2000; 467:285-90. [PMID: 10675555 DOI: 10.1016/s0014-5793(00)01172-8] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The X-ray crystal structure of a reaction centre from Rhodobacter sphaeroides with a mutation of tyrosine M210 to tryptophan (YM210W) has been determined to a resolution of 2.5 A. Structural conservation is very good throughout the body of the protein, with the tryptophan side chain adopting a position in the mutant complex closely resembling that of the tyrosine in the wild-type complex. The spectroscopic properties of the YM210W reaction centre are discussed with reference to the structural data, with particular focus on evidence that the introduction of the bulkier tryptophan in place of the native tyrosine may cause a small tilt of the macrocycle of the B(L) monomeric bacteriochlorophyll.
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Affiliation(s)
- K E McAuley
- Division of Biochemistry, University of Glasgow, Glasgow, UK
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31
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Kuglstatter A, Hellwig P, Fritzsch G, Wachtveitl J, Oesterhelt D, Mäntele W, Michel H. Identification of a hydrogen bond in the phe M197-->Tyr mutant reaction center of the photosynthetic purple bacterium Rhodobacter sphaeroides by X-ray crystallography and FTIR spectroscopy. FEBS Lett 1999; 463:169-74. [PMID: 10601661 DOI: 10.1016/s0014-5793(99)01614-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
In bacterial reaction centers the charge separation process across the photosynthetic membrane is predominantly driven by the excited state of the bacteriochlorophyll dimer (D). An X-ray structure analysis of the Phe M197-->Tyr mutant reaction center from Rhodobacter sphaeroides at 2.7 A resolution suggests the formation of a hydrogen bond as postulated by Wachtveitl et al. [Biochemistry 32, 12875-12886, 1993] between the Tyr M197 hydroxy group and one of the 2a-acetyl carbonyls of D. In combination with electrochemically induced FTIR difference spectra showing a split band of the pi-conjugated 9-keto carbonyl of D, there is clear evidence for the existence of such a hydrogen bond.
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Affiliation(s)
- A Kuglstatter
- Max-Planck-Institut für Biophysik, Heinrich-Hoffmann-Str. 7, D-60528, Frankfurt/M., Germany
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32
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Lin S, Jackson JA, Taguchi AKW, Woodbury NW. B-Side Electron Transfer Promoted by Absorbance of Multiple Photons in Rhodobacter sphaeroides R-26 Reaction Centers. J Phys Chem B 1999. [DOI: 10.1021/jp990303j] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Su Lin
- Department of Chemistry and Biochemistry and the Center for the Study of Early Events in Photosynthesis, Arizona State University, Tempe, Arizona, 85287-1604
| | - Jonathan A. Jackson
- Department of Chemistry and Biochemistry and the Center for the Study of Early Events in Photosynthesis, Arizona State University, Tempe, Arizona, 85287-1604
| | - Aileen K. W. Taguchi
- Department of Chemistry and Biochemistry and the Center for the Study of Early Events in Photosynthesis, Arizona State University, Tempe, Arizona, 85287-1604
| | - Neal W. Woodbury
- Department of Chemistry and Biochemistry and the Center for the Study of Early Events in Photosynthesis, Arizona State University, Tempe, Arizona, 85287-1604
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33
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Müh F, Jones MR, Lubitz W. Reorientation of the acetyl group of the photoactive bacteriopheophytin in reaction centers of Rhodobacter sphaeroides: an ENDOR/TRIPLE resonance study. BIOSPECTROSCOPY 1999; 5:35-46. [PMID: 10219879 DOI: 10.1002/(sici)1520-6343(1999)5:1<35::aid-bspy5>3.0.co;2-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The freeze-trapped bacteriopheophytin alpha radical anion phi(*)A- has been investigated by 1H-ENDOR/Special TRIPLE resonance spectroscopy in photosynthetic reaction centers of Rhodobacter sphaeroides, in which the Tyr at position M210 had been replaced by either Phe, Leu, His or Trp. In the wild type reaction center and the mutants YF(M210) and YW(M210) two distinct states of phi(*)A-, denoted I(*)1- and I(*)2-, can be stabilized below 200 K. The state I(*)1 is metastable and relaxes to I(*)2- as the temperature is raised from 135 K to 180 K. The difference in the electronic structure of phi(*)A- between the two states is interpreted in terms of a conformational change of phiA after freeze-trapping, involving a reorientation of the 3-acetyl group with respect to the macrocycle of the bacteriopheophytin. This interpretation is supported by the results of RHF-INDO/SP calculations. In the YH(M210) reaction center only one phiA- state is obtained that is distinct from I(*)1- and I(*)2, and the observed electronic structure indicates an almost in-plane orientation of the 3-acetyl group. This is consistent with the proposal that a hydrogen bond is formed between His M210 and the 3(1)-keto oxygen of phiA that impedes the reorientation of the acetyl group. Only one phi(*)A- state is observed in the YL(M210) reaction center, which is similar to the metastable state I(*)1 in the wild type complex. This result is interpreted in terms of a steric hindrance of the reorientation of the 3-acetyl group that is exerted by the side chain of Leu at position M210. Possible implications of these findings for the mechanism of electron transfer in bacterial reaction centers are discussed.
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Affiliation(s)
- F Müh
- Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Germany
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34
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Zusman LD, Beratan DN. Electron transfer in the photosynthetic reaction center: mechanistic implications of mutagenesis studies. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 1998; 54A:1211-1218. [PMID: 9734088 DOI: 10.1016/s1386-1425(98)00071-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
A phenomenological analysis of the driving force effects in photosynthetic reaction centers modified by mutagenesis and also by chemical means is presented. Different parameter sets associated with different mechanisms of electron transfer are consistent with the mutagenesis experiments. However, only one parameter set--connected with a sequential mechanism of electron transfer--is consistent with all known experimental data. Arguments explaining why the sequential mechanism of electron transfer is selected by nature in the wild type reaction center are provided. Why the driving force of the wild type reaction center is about 0.25 eV is explained and new driving force effects are predicted.
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Affiliation(s)
- L D Zusman
- Department of Chemistry, University of Pittsburgh, PA 15260, USA
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35
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Larsson S. Electron transfer in proteins. BIOCHIMICA ET BIOPHYSICA ACTA (BBA) - BIOENERGETICS 1998. [DOI: 10.1016/s0005-2728(98)00083-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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36
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Laporte LL, Palaniappan V, Davis DG, Kirmaier C, Schenck CC, Holten D, Bocian DF. Influence of Electronic Asymmetry on the Spectroscopic and Photodynamic Properties of the Primary Electron Donor in the Photosynthetic Reaction Center. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp961658v] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Laurent L. Laporte
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, Department of Chemistry, University of California at Riverside, Riverside, California 92521, and Department of Biochemistry, Colorado State University, Fort Collins, Colorado 80523
| | - Vaithianathan Palaniappan
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, Department of Chemistry, University of California at Riverside, Riverside, California 92521, and Department of Biochemistry, Colorado State University, Fort Collins, Colorado 80523
| | - Dianna G. Davis
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, Department of Chemistry, University of California at Riverside, Riverside, California 92521, and Department of Biochemistry, Colorado State University, Fort Collins, Colorado 80523
| | - Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, Department of Chemistry, University of California at Riverside, Riverside, California 92521, and Department of Biochemistry, Colorado State University, Fort Collins, Colorado 80523
| | - Craig C. Schenck
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, Department of Chemistry, University of California at Riverside, Riverside, California 92521, and Department of Biochemistry, Colorado State University, Fort Collins, Colorado 80523
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, Department of Chemistry, University of California at Riverside, Riverside, California 92521, and Department of Biochemistry, Colorado State University, Fort Collins, Colorado 80523
| | - David F. Bocian
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, Department of Chemistry, University of California at Riverside, Riverside, California 92521, and Department of Biochemistry, Colorado State University, Fort Collins, Colorado 80523
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37
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Aartsma TJ, Amesz J. Reaction center and antenna processes in photosynthesis at low temperature. PHOTOSYNTHESIS RESEARCH 1996; 48:99-106. [PMID: 24271290 DOI: 10.1007/bf00041000] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/1995] [Accepted: 01/29/1996] [Indexed: 06/02/2023]
Abstract
Around 1960 experiments of Arnold and Clayton, Chance and Nishimura and Calvin and coworkers demonstrated that the primary photosynthetic electron transfer processes are not abolished by cooling to cryogenic temperatures. After a brief historical introduction, this review discusses some aspects of electron transfer in bacterial reaction centers and of optical spectroscopy of photosynthetic systems with emphasis on low-temperature experiments.
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Affiliation(s)
- T J Aartsma
- Department of Biophysics, Huygens Laboratory, University of Leiden, P.O. Box 9504, 2300 RA, Leiden, The Netherlands
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Beekman LMP, van Stokkum IHM, Monshouwer R, Rijnders AJ, McGlynn P, Visschers RW, Jones MR, van Grondelle R. Primary Electron Transfer in Membrane-Bound Reaction Centers with Mutations at the M210 Position. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp953054h] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- L. M. P. Beekman
- Department of Physics and Astronomy and Department of Plant Physiology, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands, and Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - I. H. M. van Stokkum
- Department of Physics and Astronomy and Department of Plant Physiology, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands, and Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - R. Monshouwer
- Department of Physics and Astronomy and Department of Plant Physiology, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands, and Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - A. J. Rijnders
- Department of Physics and Astronomy and Department of Plant Physiology, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands, and Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - P. McGlynn
- Department of Physics and Astronomy and Department of Plant Physiology, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands, and Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - R. W. Visschers
- Department of Physics and Astronomy and Department of Plant Physiology, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands, and Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - M. R. Jones
- Department of Physics and Astronomy and Department of Plant Physiology, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands, and Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - R. van Grondelle
- Department of Physics and Astronomy and Department of Plant Physiology, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands, and Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
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39
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40
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Alden RG, Parson WW, Chu ZT, Warshel A. Orientation of the OH Dipole of Tyrosine (M)210 and Its Effect on Electrostatic Energies in Photosynthetic Bacterial Reaction Centers. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp961271s] [Citation(s) in RCA: 77] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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41
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Heller BA, Holten D, Kirmaier C. Control of electron transfer between the L- and M-sides of photosynthetic reaction centers. Science 1995; 269:940-5. [PMID: 7638616 DOI: 10.1126/science.7638616] [Citation(s) in RCA: 170] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
An aspartic acid residue has been introduced near ring V of the L-side accessory bacteriochlorophyll (BCHlL) or the photosynthetic reaction center in a rhodobacter capsulatus mutant in which a His also replaces Leu 212 on the M-polypeptide. The initial stage of charge separation in the G(M201)D/L(M212)H double mutant yields approximately 70 percent electron transfer to the L-side cofactors, approximately 15 percent rapid deactivation to the ground state, and approximately 15 percent electron transfer to the so-called inactive M-side bacteriopheophytin (BPhM). It is suggested here that the Asp introduced at M201 modulates the reduction potential of BCHlL, thereby changing the energetics of charge separation. The results demonstrate that an individual amino acid residue can, through its influence on the free energies of the charge-separated states, effectively dictate the balance between the forward electron transfer reactions on the L-side of the RC, the charge-recombination processes, and electron transfer to the M-side chromophores.
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Affiliation(s)
- B A Heller
- Department of Chemistry, Washington University, St Louis, MO 63130, USA
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42
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Laporte L, Kirmaier C, Schenck CC, Holten D. Free-energy dependence of the rate of electron transfer to the primary quinone in beta-type reaction centers. Chem Phys 1995. [DOI: 10.1016/0301-0104(95)00036-n] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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43
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van der Vos R, Franken EM, Sexton SJ, Shochat S, Gast P, Hore P, Hoff AJ. Optically detected magnetic field effects on reaction centers of Rhodobacter sphaeroides 2.4.1 and its Tyr M210 → Trp mutant. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1995. [DOI: 10.1016/0005-2728(95)00039-l] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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44
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Heller BA, Holten D, Kirmaier C. Characterization of bacterial reaction centers having mutations of aromatic residues in the binding site of the bacteriopheophytin intermediary electron carrier. Biochemistry 1995; 34:5294-302. [PMID: 7711051 DOI: 10.1021/bi00015a045] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
We report the initial characterization of a series of reaction centers (RCs) from the photosynthetic bacterium Rhodobacter capsulatus having single or double mutations of phenylalanines 97 and 121 on the L polypeptide. Substitution of these aromatic amino acids, which may interact with the photoactive bacteriopheophytin associated with the L polypeptide (BPhL), was carried out to examine their possible roles in electron transfer, charge stabilization, and/or BPhL binding. In some mutant RCs, the wild-type pigment content is obtained while in certain others a bacteriochlorophyll (BChL) replaces BPhL. The mutant RCs with wild-type pigment content are found to have overall photochemistry effectively identical to that of wild-type RCs. This indicates aromatic residues at L97 and L121 are not critical factors in the charge separation process, although an approximate 2-fold increase in the rate of electron transfer from BPhL- to QA is observed in two mutants where residue L121 is leucine. In two double mutants where L121 is histidine and L97 is either valine or cysteine, BPhL is replaced with a BChl (denoted beta). This pigment content is surprising since in the native RC structure amino acid L121 is not in optimum geometry for coordination to the Mg in the center of the pigment macrocycle. Charge separation takes place in the beta-containing mutants with an approximately 70% yield of P+QA- at 285 K compared to approximately 100% for wild-type. The photochemistry of these new beta-type RCs is very similar to that reported previously for the beta RC from Rhodobacter sphaeroides wherein the same pigment change was induced by a mutation in the M polypeptide.
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Affiliation(s)
- B A Heller
- Department of Chemistry, Washington University, St Louis, Missouri 63130, USA
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Role of amino-acid sidechains in electron-transfer reactions in reaction center ofrhodopseudomonas viridis as revealed by extended hückel molecular orbital calculations. ACTA ACUST UNITED AC 1995. [DOI: 10.1002/bspy.350010303] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Ermler U, Fritzsch G, Buchanan SK, Michel H. Structure of the photosynthetic reaction centre from Rhodobacter sphaeroides at 2.65 A resolution: cofactors and protein-cofactor interactions. Structure 1994; 2:925-36. [PMID: 7866744 DOI: 10.1016/s0969-2126(94)00094-8] [Citation(s) in RCA: 569] [Impact Index Per Article: 18.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
BACKGROUND Photosynthetic reaction centres (RCs) catalyze light-driven electron, transport across photosynthetic membranes. The photosynthetic bacterium Rhodobacter, sphaeroides is often used for studies of RCs, and three groups have determined the structure of its reaction centre. There are discrepancies between these structures, however, and to resolve these we have determined the structure to higher resolution than before, using a new crystal form. RESULTS The new structure provides a more detailed description of the Rb. sphaeroides RC, and allows us to compare it with the structure of the RC from Rhodopseudomonas viridis. We find no evidence to support most of the published differences in cofactor binding between the RCs from Rps. viridis and Rb. sphaeroides. Generally, the mode of cofactor binding is conserved, particularly along the electron transfer pathway. Substantial differences are only found at ring V of one bacteriochlorophyll of the 'special pair' and for the secondary quinone, QB. A water chain with a length of about 23 A including 14 water molecules extends from the QB to the cytoplasmic side of the RC. CONCLUSIONS The cofactor arrangement and the mode of binding to the protein seem to be very similar among the non-sulphur bacterial photosynthetic RCs. The functional role of the displaced QB molecule, which might be present as quinol, rather than quinone, is not yet clear. The newly discovered water chain to the QB binding site suggests a pathway for the protonation of the secondary quinone QB.
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Affiliation(s)
- U Ermler
- Max-Planck-Institut für Biophysik, Frankfurt/Main, Germany
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Comparison of primary electron transfer in Photosystem II reaction centres isolated from the higher plant Pisum sativum and the green alga Chlamydomonas reinhardtii. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1994. [DOI: 10.1016/0005-2728(94)90185-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Chirino AJ, Lous EJ, Huber M, Allen JP, Schenck CC, Paddock ML, Feher G, Rees DC. Crystallographic analyses of site-directed mutants of the photosynthetic reaction center from Rhodobacter sphaeroides. Biochemistry 1994; 33:4584-93. [PMID: 8161514 DOI: 10.1021/bi00181a020] [Citation(s) in RCA: 133] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Seven site-directed mutants of the bacterial photosynthetic reaction center (RC) from the 2.4.1 and WS 231 wild-type strains of Rhodobacter sphaeroides have been crystallized and their X-ray diffraction analyzed to resolutions between 3.0 and 4.0 A. The mutations can be divided into four distinct categories: (1) mutations altering cofactor composition that affect electron transfer and quantum yield, His M202-->Leu (M202HL), His L173-->Leu (L173HL), and Leu M214-->His (M214LH); (2) a mutation in the proposed pathway of electron transfer altering electron-transfer kinetics, Tyr M210-->Phe (M210YF); (3) a mutation around the non-heme iron resulting in an iron-less reaction center, His M219-->Cys (M219HC); and (4) mutations around the secondary electron acceptor, a ubiquinone, affecting proton transfer and quinone turnover, Glu L212-->Gln (L212EQ) and Asp L213-->Asn (L213DN). Residues L173 and M202 are within bonding distance of the respective magnesiums of the two bacteriochlorophylls of the BChl special pair, while M214 is close to the bacteriopheophytin on the active A branch of the RC. The L173HL and M202HL crystal structures show that the respective bacteriochlorophylls are replaced with bacteriopheophytins (i.e., loss of magnesium) without significant structural perturbations to the surrounding main-chain or side-chain atoms. In the M214LH mutant, the bacteriopheophytin has been replaced by a bacteriochlorophyll, and the side chain of His M214 is within ligand distance of the magnesium. The M210YF, L212EQ, and L213DN mutants show no significant tertiary structure changes near the mutation sites. The M219HC diffraction data indicate that the overall tertiary structure of the reaction center is maintained in the absence of the non-heme iron.
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Affiliation(s)
- A J Chirino
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena 91125
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