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Bishop N, Gillet VJ, Holliday JD, Willett P. Chemoinformatics Research at the University of Sheffield: A History and Citation Analysis. J Inf Sci 2016. [DOI: 10.1177/01655515030294003] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
This paper reviews the work of the Chemoinformatics Research Group in the Department of Information Studies at the University of Sheffield, focusing particularly on the work carried out in the period 1985-2002. Four major research areas are discussed, these involving the development of methods for: substructure searching in databases of three-dimensional structures, including both rigid and flexible molecules; the representation and searching of the Markush structures that occur in chemical patents; similarity searching in databases of both two-dimensional and three-dimensional structures; and compound selection and the design of combinatorial libraries. An analysis of citations to 321 publications from the Group shows that it attracted a total of 3725 residual citations during the period 1980-2002. These citations appeared in 411 different journals, and involved 910 different citing organizations from 54 different countries, thus demonstrating the widespread impact of the Group's work.
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Affiliation(s)
- Neal Bishop
- Department of Information Studies, University of Sheffield, Sheffield, UK
| | - Valerie J. Gillet
- Department of Information Studies, University of Sheffield, Sheffield, UK
| | - John D. Holliday
- Department of Information Studies, University of Sheffield, Sheffield, UK
| | - Peter Willett
- Department of Information Studies, University of Sheffield, Sheffield, UK,
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Robson B, Li J, Dettinger R, Peters A, Boyer SK. Drug discovery using very large numbers of patents. General strategy with extensive use of match and edit operations. J Comput Aided Mol Des 2011; 25:427-41. [DOI: 10.1007/s10822-011-9429-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2010] [Accepted: 04/12/2011] [Indexed: 11/30/2022]
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Deng W, Berthel SJ, So WV. Intuitive Patent Markush Structure Visualization Tool for Medicinal Chemists. J Chem Inf Model 2011; 51:511-20. [DOI: 10.1021/ci100261u] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Wei Deng
- Roche, 340 Kingsland Street, Nutley, New Jersey 07110, United States
| | - Steven J. Berthel
- Roche, 340 Kingsland Street, Nutley, New Jersey 07110, United States
| | - W. Venus So
- Roche, 340 Kingsland Street, Nutley, New Jersey 07110, United States
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Benichou P, Klimczak C, Borne P. Handling Genericity in Chemical Structures Using the Markush Darc Software. ACTA ACUST UNITED AC 1997. [DOI: 10.1021/ci9600364] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Pierre Benichou
- Questel.Orbit, Le Capitole, 55, Avenue des Champs Pierreux, 92029 Nanterre Cedex, France
| | - Christine Klimczak
- Questel.Orbit, Le Capitole, 55, Avenue des Champs Pierreux, 92029 Nanterre Cedex, France
| | - Philippe Borne
- INPI, 26 Bis, Rue de Saint-Petersbourg, 75800 Paris Cedex 08, France
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Tonnelier CAG, Fox J, Judson P, Krause P, Pappas N, Patel M. Representation of Chemical Structures in Knowledge-Based Systems: The StAR System. ACTA ACUST UNITED AC 1997. [DOI: 10.1021/ci960094p] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- C. A. G. Tonnelier
- LHASA UK Ltd., School of Chemistry, The University of Leeds, Leeds LS2 9JT, UK, Imperial Cancer Research Fund, Lincoln's Inn Fields, London, WC2A 3PX, UK, Logic Programming Associates Ltd., Trinity Road, London, SW18 3SX, UK
| | - J. Fox
- LHASA UK Ltd., School of Chemistry, The University of Leeds, Leeds LS2 9JT, UK, Imperial Cancer Research Fund, Lincoln's Inn Fields, London, WC2A 3PX, UK, Logic Programming Associates Ltd., Trinity Road, London, SW18 3SX, UK
| | - P. Judson
- LHASA UK Ltd., School of Chemistry, The University of Leeds, Leeds LS2 9JT, UK, Imperial Cancer Research Fund, Lincoln's Inn Fields, London, WC2A 3PX, UK, Logic Programming Associates Ltd., Trinity Road, London, SW18 3SX, UK
| | - P. Krause
- LHASA UK Ltd., School of Chemistry, The University of Leeds, Leeds LS2 9JT, UK, Imperial Cancer Research Fund, Lincoln's Inn Fields, London, WC2A 3PX, UK, Logic Programming Associates Ltd., Trinity Road, London, SW18 3SX, UK
| | - N. Pappas
- LHASA UK Ltd., School of Chemistry, The University of Leeds, Leeds LS2 9JT, UK, Imperial Cancer Research Fund, Lincoln's Inn Fields, London, WC2A 3PX, UK, Logic Programming Associates Ltd., Trinity Road, London, SW18 3SX, UK
| | - M. Patel
- LHASA UK Ltd., School of Chemistry, The University of Leeds, Leeds LS2 9JT, UK, Imperial Cancer Research Fund, Lincoln's Inn Fields, London, WC2A 3PX, UK, Logic Programming Associates Ltd., Trinity Road, London, SW18 3SX, UK
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Lynch MF, Holliday JD. The Sheffield Generic Structures Projecta Retrospective Review. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/ci950173l] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Michael F. Lynch
- Department of Information Studies, University of Sheffield, Sheffield S10 2TN, U.K
| | - John D. Holliday
- Department of Information Studies, University of Sheffield, Sheffield S10 2TN, U.K
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