1
|
Iwasaki T, Suehisa G, Tadaoka H, Shiga K, Nozaki K. Linear, Planar, Orbicular, and Macrocyclic Multinuclear Zinc (Meth)acrylate Complexes. Chemistry 2024; 30:e202400586. [PMID: 38597595 DOI: 10.1002/chem.202400586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 03/28/2024] [Accepted: 04/10/2024] [Indexed: 04/11/2024]
Abstract
Zinc carboxylate complexes are widely utilized as artificial models of metalloenzymes and as secondary building units of PCPs/MOFs. However, the relationship between the structure of the monodentate carboxylato ligand and the molecular arrangement of multinuclear zinc carboxylate complexes is not fully understood because of the coordination flexibility of the Zn ion and carboxylato ligands. Herein, we report the structural analysis of a series of complexes derived from zinc (meth)acrylate which has a linear infinite chain structure. The molecular structure of μ4-oxido-bridged tetranuclear complexes [Zn4(μ4-O)(OCOR)6] revealed a distorted Zn4O core. Crystallization of zinc acrylate under aqueous conditions afforded a μ3-hydroxido-containing pentanuclear complex [Zn5(μ3-OH)2(OCOR)8] as the repeating unit of an infinite sheet-like structure in the solid state. It was also obtained by the hydrolysis of the μ4-oxido-bridged tetranuclear complex. In sharp contrast, the methacrylate analog retained the methacrylato ligands under aqueous crystallization conditions to form a macrocyclic dodecanuclear complex with methacrylato as the sole ligand.
Collapse
Affiliation(s)
- Takanori Iwasaki
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| | - Gaito Suehisa
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| | - Hiroshi Tadaoka
- Research Department II, Research & Development HQ, Sumitomo Rubber Industries, Ltd., 2-1-1 Tsutsui-cho, Chuo-ku, Kobe, Hyogo, 651-0071, Japan
| | - Kazuyoshi Shiga
- Planning & Administration DEPT., Research & Development HQ, Sumitomo Rubber Industries, Ltd., 2-1-1 Tsutsui-cho, Chuo-ku, Kobe, Hyogo, 651-0071, Japan
| | - Kyoko Nozaki
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| |
Collapse
|
2
|
Priyanka, Maiti S. Co-assembly-mediated biosupramolecular catalysis: thermodynamic insights into nucleobase specific (oligo)nucleotide attachment and cleavage. J Mater Chem B 2023; 11:10383-10394. [PMID: 37874292 DOI: 10.1039/d3tb01747h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
Gaining control over the stability and cleavage of phosphoester and phosphodiester remains a matter of interest for their application in biotechnology to oligonucleotide-based therapeutics. Herein, we report an efficient unactivated phosphoester hydrolysis (stable mono/di/tri/cyclic nucleotide to nucleoside conversion) via a biosupramolecular system comprising of a non-covalent complex of enzyme, alkaline phosphatase (ALP), and Zn(II)-metallosurfactant. We also demonstrate the nucleobase selective activation or inhibition of ALP-mediated oligonucleotide digestion process using that complex. The higher binding affinity of Zn(II)-containing headgroup with phosphate-containing substrate enhanced the effective substrate concentration surrounding the enzyme, which, in turn, results in a drastic decrease in the Michaelis constant (KM), along with an increase in the turnover (kcat). The catalytic activation or inhibition of nucleobase-specific oligonucleotide digestion depends on the hydration, localization of the substrates, and viscosity of the resultant co-assembly upon substrate binding with the enzyme-metallosurfactant complex. Additionally, through isothermal titration calorimetry experiment, we demonstrate enthalpy-entropy change during both the supramolecular binding of (oligo)nucleotides and simultaneous activation/inhibition in catalytic cleavage. Overall, it showed the possible modularity of Zn(II)-mediated biosupramolecular interaction, describing intrinsic thermodynamic aspects in developing complex biocatalytic circuits with nucleobase-specific oligonucleotides inputs, which are relevant in designing nucleic acid-based cargo for drug delivery and bioimaging.
Collapse
Affiliation(s)
- Priyanka
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Knowledge City, Manauli 140306, India.
| | - Subhabrata Maiti
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Knowledge City, Manauli 140306, India.
| |
Collapse
|
3
|
Lin XC, Cui YS, Xie SJ, Chen DP, Zhai DD, Shi ZJ. Jellyfish-type Dinuclear Hafnium Azido Complexes: Synthesis and Reactivity. Chem Asian J 2023; 18:e202300659. [PMID: 37700430 DOI: 10.1002/asia.202300659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 09/11/2023] [Indexed: 09/14/2023]
Abstract
Di- and multinuclear hafnium complexes bridged by ligands have been rarely reported. In this article, a novel 3,5-disubstituted pyrazolate-bridged ligand LH5 with two [N2 N]2- -type chelating side arms was designed and synthesized, which supported a series of dinuclear hafnium complexes. Dinuclear hafnium azides [LHf2 (μ-1,1-N3 )2 (N3 )2 ][Na(THF)4 ] 3 and [LHf2 (μ-1,1-N3 )2 (N3 )2 ][Na(2,2,2-Kryptofix)] 4 were further synthesized and structurally characterized, featuring two sets of terminal and bridging azido ligands like jellyfishes. The reactivity of 3 under reduction conditions was conducted, leading to a formation of a tetranuclear hafnium imido complex [L1 Hf2 (μ1 -NH)(N3 ){μ2 -K}]2 5. DFT calculations revealed that the mixed imido azide 5 was generated via an intramolecular C-H insertion from a putative dinuclear HfIV -nitridyl intermediate.
Collapse
Affiliation(s)
- Xin-Cheng Lin
- Department of Chemistry, Fudan University, Shanghai, 200433, P. R. China
| | - Yun-Shu Cui
- Department of Chemistry, Fudan University, Shanghai, 200433, P. R. China
| | - Si-Jun Xie
- Department of Chemistry, Fudan University, Shanghai, 200433, P. R. China
| | - Dong-Ping Chen
- Department of Chemistry, Fudan University, Shanghai, 200433, P. R. China
| | - Dan-Dan Zhai
- Department of Chemistry, Fudan University, Shanghai, 200433, P. R. China
| | - Zhang-Jie Shi
- Department of Chemistry, Fudan University, Shanghai, 200433, P. R. China
- State Key Laboratory of Organometallic Chemistry, SIOC, CAS, Shanghai, 200032, P. R. China
| |
Collapse
|
4
|
Chen J, Calderone LA, Pan L, Quist T, Pandelia ME. The Fe and Zn cofactor dilemma. BIOCHIMICA ET BIOPHYSICA ACTA. PROTEINS AND PROTEOMICS 2023; 1871:140931. [PMID: 37353133 DOI: 10.1016/j.bbapap.2023.140931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 06/13/2023] [Accepted: 06/19/2023] [Indexed: 06/25/2023]
Abstract
Fe and Zn ions are essential enzymatic cofactors across all domains of life. Fe is an electron donor/acceptor in redox enzymes, while Zn is typically a structural element or catalytic component in hydrolases. Interestingly, the presence of Zn in oxidoreductases and Fe in hydrolases challenge this apparent functional dichotomy. In hydrolases, Fe either substitutes for Zn or specifically catalyzes certain reactions. On the other hand, Zn can replace divalent Fe and substitute for more complex Fe assemblies, known as Fe-S clusters. Although many zinc-binding proteins interchangeably harbor Zn and Fe-S clusters, these cofactors are only sometimes functional proxies.
Collapse
Affiliation(s)
- Jiahua Chen
- Department of Biochemistry, Brandeis University, Waltham, MA 02453, USA
| | - Logan A Calderone
- Department of Biochemistry, Brandeis University, Waltham, MA 02453, USA
| | - Luying Pan
- Department of Biochemistry, Brandeis University, Waltham, MA 02453, USA
| | - Trent Quist
- Department of Biochemistry, Brandeis University, Waltham, MA 02453, USA
| | | |
Collapse
|
5
|
Serafim LF, Jayasinghe-Arachchige VM, Wang L, Rathee P, Yang J, Moorkkannur N S, Prabhakar R. Distinct chemical factors in hydrolytic reactions catalyzed by metalloenzymes and metal complexes. Chem Commun (Camb) 2023. [PMID: 37366367 DOI: 10.1039/d3cc01380d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2023]
Abstract
The selective hydrolysis of the extremely stable phosphoester, peptide and ester bonds of molecules by bio-inspired metal-based catalysts (metallohydrolases) is required in a wide range of biological, biotechnological and industrial applications. Despite the impressive advances made in the field, the ultimate goal of designing efficient enzyme mimics for these reactions is still elusive. Its realization will require a deeper understanding of the diverse chemical factors that influence the activities of both natural and synthetic catalysts. They include catalyst-substrate complexation, non-covalent interactions and the electronic nature of the metal ion, ligand environment and nucleophile. Based on our computational studies, their roles are discussed for several mono- and binuclear metallohydrolases and their synthetic analogues. Hydrolysis by natural metallohydrolases is found to be promoted by a ligand environment with low basicity, a metal bound water and a heterobinuclear metal center (in binuclear enzymes). Additionally, peptide and phosphoester hydrolysis is dominated by two competing effects, i.e. nucleophilicity and Lewis acid activation, respectively. In synthetic analogues, hydrolysis is facilitated by the inclusion of a second metal center, hydrophobic effects, a biological metal (Zn, Cu and Co) and a terminal hydroxyl nucleophile. Due to the absence of the protein environment, hydrolysis by these small molecules is exclusively influenced by nucleophile activation. The results gleaned from these studies will enhance the understanding of fundamental principles of multiple hydrolytic reactions. They will also advance the development of computational methods as a predictive tool to design more efficient catalysts for hydrolysis, Diels-Alder reaction, Michael addition, epoxide opening and aldol condensation.
Collapse
Affiliation(s)
- Leonardo F Serafim
- Department of Chemistry, University of Miami, Coral Gables, FL 33146, USA.
| | | | - Lukun Wang
- Department of Chemistry, University of Miami, Coral Gables, FL 33146, USA.
| | - Parth Rathee
- Department of Chemistry, University of Miami, Coral Gables, FL 33146, USA.
| | - Jiawen Yang
- Department of Chemistry, University of Miami, Coral Gables, FL 33146, USA.
| | | | - Rajeev Prabhakar
- Department of Chemistry, University of Miami, Coral Gables, FL 33146, USA.
| |
Collapse
|
6
|
Jayasinghe-Arachchige VM, Serafim LF, Hu Q, Ozen C, Moorkkannur SN, Schenk G, Prabhakar R. Elucidating the Roles of Distinct Chemical Factors in the Hydrolytic Activities of Hetero- and Homonuclear Synthetic Analogues of Binuclear Metalloenzymes. ACS Catal 2023. [DOI: 10.1021/acscatal.2c05758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Affiliation(s)
| | - Leonardo F. Serafim
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Qiaoyu Hu
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Cihan Ozen
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Sreerag N. Moorkkannur
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Gerhard Schenk
- School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Brisbane, Queensland 4072, Australia
| | - Rajeev Prabhakar
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| |
Collapse
|
7
|
Giampà M, Corinti D, Maccelli A, Fornarini S, Berden G, Oomens J, Schwarzbich S, Glaser T, Crestoni ME. Binding Modes of a Cytotoxic Dinuclear Copper(II) Complex with Phosphate Ligands Probed by Vibrational Photodissociation Ion Spectroscopy. Inorg Chem 2023; 62:1341-1353. [PMID: 36655890 PMCID: PMC9890465 DOI: 10.1021/acs.inorgchem.2c02091] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
The dinuclear copper complex bearing a 2,7-disubstituted-1,8-naphthalenediol ligand, [(HtomMe){Cu(OAc)}2](OAc), a potential anticancer drug able to bind to two neighboring phosphates in the DNA backbone, is endowed with stronger cytotoxic effects and inhibition ability of DNA synthesis in human cancer cells as compared to cisplatin. In this study, the intrinsic binding ability of the charged complex [(HtomMe){Cu(OAc)}2]+ is investigated with representative phosphate diester ligands with growing chemical complexity, ranging from simple inorganic phosphate up to mononucleotides. An integrated method based on high-resolution mass spectrometry (MS), tandem MS, and infrared multiple photon dissociation (IRMPD) spectroscopy in the 600-1800 cm-1 spectral range, backed by quantum chemical calculations, has been used to characterize complexes formed in solution and delivered as bare species by electrospray ionization. The structural features revealed by IRMPD spectroscopy have been interpreted by comparison with linear IR spectra of the lowest-energy structures, revealing diagnostic signatures of binding modes of the dinuclear copper(II) complex with phosphate groups, whereas the possible competitive interaction with the nucleobase is silenced in the gas phase. This result points to the prevailing interaction of [(HtomMe){Cu(OAc)}2]+ with phosphate diesters and mononucleotides as a conceivable contribution to the observed anticancer activity.
Collapse
Affiliation(s)
- Marco Giampà
- Department
of Clinical and Molecular Medicine, Norwegian
University of Science and Technology, Olav Kyrres Gate 9, 7030 Trondheim, Norway
| | - Davide Corinti
- Dipartimento
di Chimica e Tecnologie del Farmaco, Università
di Roma “La Sapienza”, I-00185 Roma, Italy,
| | - Alessandro Maccelli
- Dipartimento
di Chimica e Tecnologie del Farmaco, Università
di Roma “La Sapienza”, I-00185 Roma, Italy
| | - Simonetta Fornarini
- Dipartimento
di Chimica e Tecnologie del Farmaco, Università
di Roma “La Sapienza”, I-00185 Roma, Italy
| | - Giel Berden
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Jos Oomens
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Sabrina Schwarzbich
- Lehrstuhl
für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, D-33615 Bielefeld, Germany
| | - Thorsten Glaser
- Lehrstuhl
für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, D-33615 Bielefeld, Germany
| | - Maria Elisa Crestoni
- Dipartimento
di Chimica e Tecnologie del Farmaco, Università
di Roma “La Sapienza”, I-00185 Roma, Italy,
| |
Collapse
|
8
|
Serafim LF, Jayasinghe-Arachchige VM, Wang L, Prabhakar R. Promiscuous Catalytic Activity of a Binuclear Metallohydrolase: Peptide and Phosphoester Hydrolyses. J Chem Inf Model 2022; 62:2466-2480. [PMID: 35451306 DOI: 10.1021/acs.jcim.2c00214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this study, chemical promiscuity of a binuclear metallohydrolase Streptomyces griseus aminopeptidase (SgAP) has been investigated using DFT calculations. SgAP catalyzes two diverse reactions, peptide and phosphoester hydrolyses, using its binuclear (Zn-Zn) core. On the basis of the experimental information, mechanisms of these reactions have been investigated utilizing leucine p-nitro aniline (Leu-pNA) and bis(4-nitrophenyl) phosphate (BNPP) as the substrates. The computed barriers of 16.5 and 16.8 kcal/mol for the most plausible mechanisms proposed by the DFT calculations are in good agreement with the measured values of 13.9 and 18.3 kcal/mol for the Leu-pNA and BNPP hydrolyses, respectively. The former was found to occur through the transfer of two protons, while the latter with only one proton transfer. They are in line with the experimental observations. The cleavage of the peptide bond was the rate-determining process for the Leu-pNA hydrolysis. However, the creation of the nucleophile and its attack on the electrophile phosphorus atom was the rate-determining step for the BNPP hydrolysis. These calculations showed that the chemical nature of the substrate and its binding mode influence the nucleophilicity of the metal bound hydroxyl nucleophile. Additionally, the nucleophilicity was found to be critical for the Leu-pNA hydrolysis, whereas double Lewis acid activation was needed for the BNPP hydrolysis. That could be one of the reasons why peptide hydrolysis can be catalyzed by both mononuclear and binuclear metal cofactors containing hydrolases, while phosphoester hydrolysis is almost exclusively by binuclear metallohydrolases. These results will be helpful in the development of versatile catalysts for chemically distinct hydrolytic reactions.
Collapse
Affiliation(s)
- Leonardo F Serafim
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | | | - Lukun Wang
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| | - Rajeev Prabhakar
- Department of Chemistry, University of Miami, Coral Gables, Florida 33146, United States
| |
Collapse
|
9
|
Planeta Kepp K. Bioinorganic Chemistry of Zinc in Relation to the Immune System. Chembiochem 2021; 23:e202100554. [PMID: 34889510 DOI: 10.1002/cbic.202100554] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 12/09/2021] [Indexed: 01/18/2023]
Abstract
Zinc is well-known to have a central role in human inflammation and immunity and is itself an anti-inflammatory and antiviral agent. Despite its massively documented role in such processes, the underlying chemistry of zinc in relation to specific proteins and pathways of the immune system has not received much focus. This short review provides an overview of this topic, with emphasis on the structures of key proteins, zinc coordination chemistry, and probable mechanisms involved in zinc-based immunity, with some focus points for future chemical and biological research.
Collapse
Affiliation(s)
- Kasper Planeta Kepp
- DTU Chemistry, Technical University of Denmark, Building 206, 2800, Kongens Lyngby, Denmark
| |
Collapse
|
10
|
Cui J, Dietz M, Härterich M, Fantuzzi F, Lu W, Dewhurst RD, Braunschweig H. Diphosphino-Functionalized 1,8-Naphthyridines: a Multifaceted Ligand Platform for Boranes and Diboranes. Chemistry 2021; 27:15751-15756. [PMID: 34545966 PMCID: PMC9292315 DOI: 10.1002/chem.202102721] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Indexed: 12/25/2022]
Abstract
A 1,8‐naphthyridine diphosphine (NDP) reacts with boron‐containing Lewis acids to generate complexes featuring a number of different naphthyridine bonding modes. When exposed to diborane B2Br4, NDP underwent self‐deprotonation to afford [NDP‐B2Br3]Br, an unsymmetrical diborane comprised of four fused rings. The reaction of two equivalents of monoborane BBr3 and NDP in a non‐polar solvent provided the simple phosphine‐borane adduct [NDP(BBr3)2], which then underwent intramolecular halide abstraction to furnish the salt [NDP‐BBr2][BBr4], featuring a different coordination mode from that of [NDP‐B2Br3]Br. Direct deprotonation of NDP by KHMDS or PhCH2K generates mono‐ and dipotassium reagents, respectively. The monopotassium reagent reacts with one or half an equivalent of B2(NMe2)2Cl2 to afford NDP‐based diboranes with three or four amino substituents.
Collapse
Affiliation(s)
- Jingjing Cui
- School of Chemistry and Environmental Engineering, Wuhan Institute of Technology, Wuhan, 430205, P. R. China.,Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Maximilian Dietz
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Marcel Härterich
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Felipe Fantuzzi
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Institute for Physical and Theoretical Chemistry, Julius-Maximilians-Universität Würzburg, Emil-Fischer-Str. 42, 97074, Würzburg, Germany
| | - Wei Lu
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Rian D Dewhurst
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Holger Braunschweig
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany.,Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| |
Collapse
|
11
|
Jeon H, Vazquez-Lima H, Jeong H, Cho KB, Hong S. Mono- and dinuclear zinc complexes bearing identical bis(thiosemicarbazone) ligand that exhibit alkaline phosphatase-like catalytic reactivity. J Biol Inorg Chem 2021; 27:37-47. [PMID: 34714402 DOI: 10.1007/s00775-021-01909-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 10/22/2021] [Indexed: 10/20/2022]
Abstract
Mono- and dinuclear zinc(II) complexes bearing bis(thiosemicarbazone) (bTSC) ligand were employed in the cleavage of phosphoester bonds. Comparative kinetic studies combined with theory suggested that the P-O bond cleavage is much accelerated by dinuclear zinc(II) complex in the presence of base. Based on the DFT-optimized structures of the proposed intermediates, it is plausible that (1) the removal of sulfur atoms of bTSC ligand from the zinc center provides two vacant sites for the binding of water (or hydroxide ion) and phosphoester and (2) the H-bonding between water (or hydroxide ion) and phosphoester, through several water molecules, may also assist the P-O bond cleavage and facilitate the nucleophilic attack. The kinetic and catalytic studies on the hydrolysis of phosphoester by dinuclear zinc complex showed a much-enhanced reactivity under basic reaction conditions, reaching over 95% conversion yield within 4 h. The currently presented compounds are arguably one of the faster synthetic Zn-based model performing phosphatase-like activity presented so far.
Collapse
Affiliation(s)
- Hyeri Jeon
- Department of Chemistry, Sookmyung Women's University, Seoul, 04310, Republic of Korea
| | - Hugo Vazquez-Lima
- Department of Chemistry, Jeonbuk National University, Jeonju, 54896, Republic of Korea.,Department of Inorganic Chemistry, Meritorious Autonomous University of Puebla, 72000, Puebla, Mexico
| | - Haewon Jeong
- Department of Chemistry, Sookmyung Women's University, Seoul, 04310, Republic of Korea
| | - Kyung-Bin Cho
- Department of Chemistry, Jeonbuk National University, Jeonju, 54896, Republic of Korea.
| | - Seungwoo Hong
- Department of Chemistry, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
| |
Collapse
|
12
|
Foley W, Arman H, Musie GT. Homodinuclear copper(II) and zinc(II) complexes of a carboxylate-rich ligand as synthetic mimics of phosphoester hydrolase in aqueous solutions. J Inorg Biochem 2021; 225:111589. [PMID: 34530333 DOI: 10.1016/j.jinorgbio.2021.111589] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 07/14/2021] [Accepted: 08/18/2021] [Indexed: 11/28/2022]
Abstract
The synthesis, characterization and catalytic activities of two homodinuclear Cu(II) and Zn(II) complexes of a carboxylate-rich ligand, N,N'-Bis[2-carboxybenzomethyl]-N,N' -Bis[carboxymethyl]-1,3-diaminopropan-2-ol (H5ccdp) ligand towards the hydrolysis of (p-nitrophenyl phosphate) (PNPP) and bis(p-nitrophenyl) phosphate (BNPP) substrates in aqueous systems are described. Kinetic investigations were carried out using UV-Vis spectrophotometric techniques at 25 °C and 37 °C and different pH (7-10) conditions. The kinetic studies revealed that the turnover rate (kcat) values among the PNPP hydrolysis systems, the highest and the lowest kcat values were displayed by [Cu2(ccdp)(μ-OAc)]2- at 2.34 × 10-6 s-1 (pH 8 and 37 °C) and 2.13 × 10-8 s-1 (pH 8 and 25 °C), respectively. However, similar comparisons among the BNPP hydrolysis revealed that highest and the lowest kcat values were displayed by [Zn2(ccdp)(μ-OAc)]2- at 4.64 × 10-8 s-1 (pH 9 and 37 °C) and 2.38 × 10-9 (pH 9 and 25 °C). Significantly enough, the catalyst-substrate adduct species containing a metal bound PNPP and BNPP have been detected by ESI-MS techniques. Additionally, a PNPP-bound copper complex has been isolated and crystalized using single crystal X-ray diffraction technique. Based on the structural and activity information obtained in this study, reaction mechanisms for the hydrolysis of PNPP have been proposed.
Collapse
Affiliation(s)
- William Foley
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX 78249, United States
| | - Hadi Arman
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX 78249, United States
| | - Ghezai T Musie
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX 78249, United States.
| |
Collapse
|
13
|
Romanholo PVV, Razzino CA, Raymundo-Pereira PA, Prado TM, Machado SAS, Sgobbi LF. Biomimetic electrochemical sensors: New horizons and challenges in biosensing applications. Biosens Bioelectron 2021; 185:113242. [PMID: 33915434 DOI: 10.1016/j.bios.2021.113242] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 04/05/2021] [Accepted: 04/07/2021] [Indexed: 12/12/2022]
Abstract
The urge to meet the ever-growing needs of sensing technology has spurred research to look for new alternatives to traditional analytical methods. In this scenario, the glucometer is the flagship of commercial electrochemical sensing platforms, combining selectivity, reliability and portability. However, other types of enzyme-based biosensors seldom achieve the market, in spite of the large and increasing number of publications. The reasons behind their commercial limitations concern enzyme denaturation, and the high costs associated with procedures for their extraction and purification. In this sense, biomimetic materials that seek to imitate the desired properties of natural enzymes and biological systems have come out as an appealing path for robust and sensitive electrochemical biosensors. We herein portray the historical background of these biomimicking materials, covering from their beginnings until the most impactful applications in the field of electrochemical sensing platforms. Throughout the discussion, we present and critically appraise the major benefits and the most significant drawbacks offered by the bioinspired systems categorized as Nanozymes, Synzymes, Molecularly Imprinted Polymers (MIPs), Nanochannels, and Metal Complexes. Innovative strategies of fabrication and challenging applications are further reviewed and evaluated. In the end, we ponder over the prospects of this emerging field, assessing the most critical issues that shall be faced in the coming decade.
Collapse
Affiliation(s)
- Pedro V V Romanholo
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO, 74690-900, Brazil
| | - Claudia A Razzino
- Instituto de Pesquisa e Desenvolvimento, Universidade Do Vale Do Paraíba, São José Dos Campos, SP, 12244-000, Brazil
| | | | - Thiago M Prado
- Instituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, 13566-590, Brazil
| | - Sergio A S Machado
- Instituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, 13566-590, Brazil
| | - Livia F Sgobbi
- Instituto de Química, Universidade Federal de Goiás, Goiânia, GO, 74690-900, Brazil.
| |
Collapse
|
14
|
Junaid QM, Sureshbabu P, Sabiah S. Phosphoester hydrolysis promoted by quinoline functionalized Ni(II) and Zn(II) complexes. J COORD CHEM 2021. [DOI: 10.1080/00958972.2021.1910944] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
15
|
Bhattacharyya A, Jameei A, Karande AA, Chakravarty AR. BODIPY-attached zinc(II) complexes of curcumin drug for visible light assisted photo-sensitization, cellular imaging and targeted PDT. Eur J Med Chem 2021; 220:113438. [PMID: 33915370 DOI: 10.1016/j.ejmech.2021.113438] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 03/28/2021] [Accepted: 04/02/2021] [Indexed: 12/13/2022]
Abstract
Boron-dipyrromethene (BODIPY) based photosensitizers as porphyrinoids and curcumin as natural product possess exciting photophysical features suitable for theranostic applications, namely, imaging and photodynamic therapy (PDT). Limited aqueous solubility and insufficient physiological stability, however, reduce their efficacy significantly. We have designed a novel strategy to deliver these two unusable cytotoxins simultaneously in cancer cells and herein, report the synthesis, characterization and imaging-assisted photocytotoxicity of three zinc(II) complexes containing N3-donor dipicolylamine (dpa) ligands (L1-3) and O,O-donor curcumin (Hcur) viz. [Zn(L1)(cur)]Cl (1), [Zn(L2)(cur)]Cl (2) and [Zn(L3)(cur)]Cl (3), where L2 and L3 have pendant fluorescent BODIPY and non-emissive di-iodo-BODIPY moieties. Metal chelation imparted remarkable biological stability (pH ∼7.4) to the respective ligands and induces significant aqueous solubility. These ternary complexes could act as replacements of the existing metalloporphyrin-based PDT photosensitizers as their visible-light photosensitizing ability is reinforced by the dual presence of blue light absorbing curcumin and green light harvesting BODIPY units. Complex 2 having emissive BODIPY unit L2 and curcumin, showed mitochondria selective localization in HeLa, MCF-7 cancer cells and complex 3, the di-iodinated analogue of complex 2, exhibited type-I/II PDT activity via inducing apoptosis through mitochondrial membrane disruption in cancer cells while being significantly nontoxic in dark and to the healthy cells.
Collapse
Affiliation(s)
- Arnab Bhattacharyya
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Sir C.V. Raman Avenue, Bangalore, 560012, India
| | - Aida Jameei
- Department of Biochemistry, Indian Institute of Science, Sir C.V. Raman Avenue, Bangalore, 560012, India
| | - Anjali A Karande
- Department of Biochemistry, Indian Institute of Science, Sir C.V. Raman Avenue, Bangalore, 560012, India.
| | - Akhil R Chakravarty
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Sir C.V. Raman Avenue, Bangalore, 560012, India.
| |
Collapse
|
16
|
Rahman AB, Okamoto H, Miyazawa Y, Aoki S. Design and Synthesis of Supramolecular Phosphatases Formed from a Bis(Zn
2+
‐Cyclen) Complex, Barbital‐Crown‐K
+
Conjugate and Cu
2+
for the Catalytic Hydrolysis of Phosphate Monoester. Eur J Inorg Chem 2021. [DOI: 10.1002/ejic.202001009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Akib Bin Rahman
- Faculty of Pharmaceutical Science Tokyo University of Science 2641 Yamazaki Noda Chiba 278-8510 Japan
| | - Hirokazu Okamoto
- Faculty of Pharmaceutical Science Tokyo University of Science 2641 Yamazaki Noda Chiba 278-8510 Japan
| | - Yuya Miyazawa
- Faculty of Pharmaceutical Science Tokyo University of Science 2641 Yamazaki Noda Chiba 278-8510 Japan
| | - Shin Aoki
- Faculty of Pharmaceutical Science Tokyo University of Science 2641 Yamazaki Noda Chiba 278-8510 Japan
- Research Institute for Science and Technology Tokyo University of Science 2641 Yamazaki Noda Chiba 278-8510 Japan
- Research Institute for Biomedical Sciences Tokyo University of Science 2641 Yamazaki Noda Chiba 278-8510 Japan
| |
Collapse
|
17
|
Maity R, Birenheide BS, Breher F, Sarkar B. Cooperative Effects in Multimetallic Complexes Applied in Catalysis. ChemCatChem 2021. [DOI: 10.1002/cctc.202001951] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Ramananda Maity
- Department of Chemistry University of Calcutta 92, A. P. C. Road Kolkata 700009 India
| | - Bernhard S. Birenheide
- Institute of Inorganic Chemistry Karlsruhe Institute of Technology (KIT) Engesserstr. 15 76131 Karlsruhe Germany
| | - Frank Breher
- Institute of Inorganic Chemistry Karlsruhe Institute of Technology (KIT) Engesserstr. 15 76131 Karlsruhe Germany
| | - Biprajit Sarkar
- Lehrstuhl für Anorganische Koordinationschemie Institut für Anorganische Chemie Universität Stuttgart Pfaffenwaldring 55 D 70569 Stuttgart Germany
| |
Collapse
|
18
|
A de novo binuclear zinc enzyme with DNA cleavage activity. J Biol Inorg Chem 2021; 26:161-167. [PMID: 33469708 DOI: 10.1007/s00775-020-01845-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Accepted: 12/16/2020] [Indexed: 12/15/2022]
Abstract
Metallohydrolases are broadly used throughout biology, often to catalyze the degradation of macromolecules such as DNA and proteins. Many of these enzymes function with zinc in their active site, and an important subset of these enzymes utilize a binuclear zinc active site. Mimics of these enzymes have been developed, some of which catalyze the digestion of DNA. However, the majority of the mimics that utilize zinc are small molecules, and most are mononuclear. Herein, we report DNA cleavage activity by the de novo designed Due Ferri single-chain (DFsc) protein containing a binuclear zinc active site. This binuclear zinc-protein complex is able to digest plasmid DNA at rates up to 50 ng/h, and these cleavage rates are affected by changes to amino acid residues near the zinc-binding site. These results indicate that the DFsc scaffold is a good model system to carry out careful structure-function relationship studies to understand key structural features that influence reactivity in natural binuclear zinc hydrolases, as it is the first report of a binuclear model system in a protein scaffold.
Collapse
|
19
|
Shu J, Yue J, Qiu X, Liu X, Ren W, Li Q, Li Y, Xu B, Zhang K, Jiang W. Binuclear metal complexes with a novel hexadentate imidazole derivative for the cleavage of phosphate diesters and biomolecules: distinguishable mechanisms. Inorg Chem Front 2021. [DOI: 10.1039/d1qi00108f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Oxidative cleavage of phosphate diesters (HPNP, BNPP) is highly faster than the hydrolytic one by binuclear metal complexes with novel imidazole derivative, producing a non-lactone phosphate monoester due to the direct attack of free radicals.
Collapse
Affiliation(s)
- Jun Shu
- School of Chemistry and Environmental Engineering
- Sichuan University of Science & Engineering
- Sichuan Zigong 643000
- P. R. China
| | - Jian Yue
- School of Chemistry and Environmental Engineering
- Sichuan University of Science & Engineering
- Sichuan Zigong 643000
- P. R. China
| | - Xin Qiu
- School of Chemistry and Environmental Engineering
- Sichuan University of Science & Engineering
- Sichuan Zigong 643000
- P. R. China
| | - Xiaoqiang Liu
- School of Chemistry and Environmental Engineering
- Sichuan University of Science & Engineering
- Sichuan Zigong 643000
- P. R. China
| | - Wang Ren
- School of Chemistry and Environmental Engineering
- Sichuan University of Science & Engineering
- Sichuan Zigong 643000
- P. R. China
| | - Qianli Li
- College of Chemistry and Chemical Engineering
- Liaocheng University
- Shandong Liaocheng 252059
- P. R. China
| | - Yulong Li
- School of Chemistry and Environmental Engineering
- Sichuan University of Science & Engineering
- Sichuan Zigong 643000
- P. R. China
| | - Bin Xu
- School of Chemistry and Environmental Engineering
- Sichuan University of Science & Engineering
- Sichuan Zigong 643000
- P. R. China
| | - Kaiming Zhang
- School of Chemistry and Environmental Engineering
- Sichuan University of Science & Engineering
- Sichuan Zigong 643000
- P. R. China
| | - Weidong Jiang
- School of Chemistry and Environmental Engineering
- Sichuan University of Science & Engineering
- Sichuan Zigong 643000
- P. R. China
| |
Collapse
|
20
|
Drienovská I, Scheele RA, Gutiérrez de Souza C, Roelfes G. A Hydroxyquinoline-Based Unnatural Amino Acid for the Design of Novel Artificial Metalloenzymes. Chembiochem 2020; 21:3077-3081. [PMID: 32585070 PMCID: PMC7689906 DOI: 10.1002/cbic.202000306] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 06/25/2020] [Indexed: 11/11/2022]
Abstract
We have examined the potential of the noncanonical amino acid (8-hydroxyquinolin-3-yl)alanine (HQAla) for the design of artificial metalloenzymes. HQAla, a versatile chelator of late transition metals, was introduced into the lactococcal multidrug-resistance regulator (LmrR) by stop codon suppression methodology. LmrR_HQAla was shown to complex efficiently with three different metal ions, CuII , ZnII and RhIII to form unique artificial metalloenzymes. The catalytic potential of the CuII -bound LmrR_HQAla enzyme was shown through its ability to catalyse asymmetric Friedel-Craft alkylation and water addition, whereas the ZnII -coupled enzyme was shown to mimic natural Zn hydrolase activity.
Collapse
Affiliation(s)
- Ivana Drienovská
- Stratingh Institute for ChemistryUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
| | - Remkes A. Scheele
- Stratingh Institute for ChemistryUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
| | - Cora Gutiérrez de Souza
- Stratingh Institute for ChemistryUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
| | - Gerard Roelfes
- Stratingh Institute for ChemistryUniversity of GroningenNijenborgh 49747 AGGroningenThe Netherlands
| |
Collapse
|
21
|
Simon J, Stammler A, Oldengott J, Bögge H, Glaser T. Proof of Phosphate Diester Binding Ability of Cytotoxic DNA-Binding Complexes. Inorg Chem 2020; 59:14615-14619. [DOI: 10.1021/acs.inorgchem.0c02644] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Jasmin Simon
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Anja Stammler
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Jan Oldengott
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Hartmut Bögge
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Thorsten Glaser
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| |
Collapse
|
22
|
Schwarzbich S, Horstmann Née Gruschka C, Simon J, Siebe L, Moreth A, Wiegand C, Lavrentieva A, Scheper T, Stammler A, Bögge H, Fischer von Mollard G, Glaser T. Stronger Cytotoxicity for Cancer Cells Than for Fast Proliferating Human Stem Cells by Rationally Designed Dinuclear Complexes. Inorg Chem 2020; 59:14464-14477. [PMID: 32951424 DOI: 10.1021/acs.inorgchem.0c02255] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Cytostatic metallo-drugs mostly bind to the nucleobases of DNA. A new family of dinuclear transition metal complexes was rationally designed to selectively target the phosphate diesters of the DNA backbone by covalent bonding. The synthesis and characterization of the first dinuclear NiII2 complex of this family are presented, and its DNA binding and interference with DNA synthesis in polymerase chain reaction (PCR) are investigated and compared to those of the analogous CuII2 complex. The NiII2 complex also binds to DNA but forms fewer intermolecular DNA cross-links, while it interferes with DNA synthesis in PCR at lower concentrations than CuII2. To simulate possible competing phosphate-based ligands in vivo, these effects have been studied for both complexes with 100-200-fold excesses of phosphate and ATP, which provided no disturbance. The cytotoxicity of both complexes has been studied for human cancer cells and human stem cells with similar rates of proliferation. CuII2 shows the lowest IC50 values and a remarkable preference for killing the cancer cells. Three different assays show that the CuII2 complex induces apoptosis in cancer cells. These results are discussed to gain insight into the mechanisms of action and demonstrate the potential of this family of dinuclear complexes as anticancer drugs acting by a new binding target.
Collapse
Affiliation(s)
- Sabrina Schwarzbich
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Claudia Horstmann Née Gruschka
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Jasmin Simon
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Lena Siebe
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Alexander Moreth
- Lehrstuhl für Biochemie III, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Christiane Wiegand
- Lehrstuhl für Biochemie III, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Antonina Lavrentieva
- Zentrum Angewandte Chemie, Institut für Technische Chemie, Callinstrasse 5, D-30167 Hannover, Germany
| | - Thomas Scheper
- Zentrum Angewandte Chemie, Institut für Technische Chemie, Callinstrasse 5, D-30167 Hannover, Germany
| | - Anja Stammler
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Hartmut Bögge
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Gabriele Fischer von Mollard
- Lehrstuhl für Biochemie III, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Thorsten Glaser
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| |
Collapse
|
23
|
Jiao Y, Hong J, Chen Y, Zhang Y, Guo Z, Han Z, He W. A novel binuclear Pd(ii) complex displaying synergic peptide cleavage behaviour. Dalton Trans 2020; 49:3164-3173. [PMID: 32095803 DOI: 10.1039/d0dt00130a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Mononuclear Pd(ii) complexes with two leaving groups are able to promote His-, Cys- and Met-orientated peptide hydrolysis, and exploring the peptide cleavage behavior of a novel Pd(ii) complex may provide "Omics" studies a promising artificial protease. In this study, a novel binuclear Pd(ii) complex [Pd2(μ-O-L-H)(μ-Cl)](ClO4)2 (L = 2,6-bis(N-2'-aminoethylaminomethyl)-p-cresol) was constructed to promote peptide hydrolysis. Although each Pd(ii) center has only one leaving group (Cl) in this complex, electrophoresis and LC-MS-MS determination discloses that this complex enables myoglobin cleavage on the second upstream peptide bond from His and Met. A study on peptide cleavage also confirms the His- and Met-orientated peptide hydrolysis, yet no Cys-orientated hydrolysis was observed, although the cysteine-induced peptide/complex binding is distinct. Cysteine in the peptide even prevents the complex from promoting His-orientated hydrolysis, whereas the oxidized cysteine residue recovers the His-orientated hydrolysis. This peptide cleavage behavior is quite different from the simultaneous His-, Cys-, and Met-orientated hydrolysis promoted by the mononuclear Pd(ii) complexes. A theoretical study suggests that the two Pd(ii) centers of this complex might promote His- and Met-orientated hydrolysis in a synergic manner: one Pd(ii) center binds selectively on peptides or proteins and the other coordinates with the amide bond and water favoring nucleophilic attack on the peptide bond. The thiol group of cysteine is inclined to bridge the two Pd(ii) centers to form a "closed" sulphur-bridged structure, disfavoring the Cys-orientated hydrolysis. This study not only demonstrates the peptide cleavage behavior of this binuclear Pd(ii) complex, but also provides a polynuclear strategy to regulate the peptide cleavage behavior of Pd(ii) complexes.
Collapse
Affiliation(s)
- Yang Jiao
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China.
| | | | | | | | | | | | | |
Collapse
|
24
|
Dera R, Diliën H, Adriaensens P, Guedens W, Cleij TJ. An Efficient Thermal Elimination Pathway toward Phosphodiester Hydrogels via a Precursor Approach. MACROMOL CHEM PHYS 2020. [DOI: 10.1002/macp.201900466] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Rafael Dera
- IMOHasselt University 3590 Diepenbeek Belgium
| | - Hanne Diliën
- Sensor EngineeringFaculty of Science and EngineeringMaastricht University Urmonderbaan 22, Chemelot Center Court Gebouw 200 6167 RD Geleen The Netherlands
| | | | | | - Thomas J. Cleij
- Sensor EngineeringFaculty of Science and EngineeringMaastricht University Urmonderbaan 22, Chemelot Center Court Gebouw 200 6167 RD Geleen The Netherlands
| |
Collapse
|
25
|
Hu Q, Jayasinghe‐Arachchige VM, Sharma G, Serafim LF, Paul TJ, Prabhakar R. Mechanisms of peptide and phosphoester hydrolysis catalyzed by two promiscuous metalloenzymes (insulin degrading enzyme and glycerophosphodiesterase) and their synthetic analogues. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2020. [DOI: 10.1002/wcms.1466] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Qiaoyu Hu
- Department of Chemistry, University of Miami Coral Gables Florida
| | | | - Gaurav Sharma
- Department of Chemistry, University of Miami Coral Gables Florida
| | | | - Thomas J. Paul
- Department of Chemistry, University of Miami Coral Gables Florida
| | - Rajeev Prabhakar
- Department of Chemistry, University of Miami Coral Gables Florida
| |
Collapse
|
26
|
Abstract
The mercapturic acid pathway is a major route for the biotransformation of xenobiotic and endobiotic electrophilic compounds and their metabolites. Mercapturic acids (N-acetyl-l-cysteine S-conjugates) are formed by the sequential action of the glutathione transferases, γ-glutamyltransferases, dipeptidases, and cysteine S-conjugate N-acetyltransferase to yield glutathione S-conjugates, l-cysteinylglycine S-conjugates, l-cysteine S-conjugates, and mercapturic acids; these metabolites constitute a "mercapturomic" profile. Aminoacylases catalyze the hydrolysis of mercapturic acids to form cysteine S-conjugates. Several renal transport systems facilitate the urinary elimination of mercapturic acids; urinary mercapturic acids may serve as biomarkers for exposure to chemicals. Although mercapturic acid formation and elimination is a detoxication reaction, l-cysteine S-conjugates may undergo bioactivation by cysteine S-conjugate β-lyase. Moreover, some l-cysteine S-conjugates, particularly l-cysteinyl-leukotrienes, exert significant pathophysiological effects. Finally, some enzymes of the mercapturic acid pathway are described as the so-called "moonlighting proteins," catalytic proteins that exert multiple biochemical or biophysical functions apart from catalysis.
Collapse
Affiliation(s)
- Patrick E Hanna
- Department of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, USA
| | - M W Anders
- Department of Pharmacology and Physiology, University of Rochester Medical Center, Rochester, NY, USA
| |
Collapse
|
27
|
Fu J, Chang Y, Li B, Wang X, Xie X, Xu K. A dual fluorescence probe for Zn 2+ and Al 3+ through differentially response and bioimaging in living cells. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 225:117493. [PMID: 31494382 DOI: 10.1016/j.saa.2019.117493] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Revised: 08/11/2019] [Accepted: 08/28/2019] [Indexed: 06/10/2023]
Abstract
A novel Schiff base fluorescent probe 7-Hydroxy-8-(((2-(hydroxymethyl)quinolin-8-yl)imino)methyl)-coumarin (XL) consist of formylcoumarin and aminoquinoline moieties was synthesized for dual detection of Zn2+ and Al3+ ions. Probe XL exhibited high selective and sensitive response towards Zn2+ and Al3+ ions through different color changes and significant fluorescence turn-on response (270 fold higher for Zn2+ and 230 fold higher for Al3+) in MeOH-H2O (4/1, v/v) over other cations, with detection limits (LOD) as low as 3.75 × 10-8 and 1.14 × 10-8 M, respectively. Moreover, probe XL exhibited preferential selectivity for Al3+ through displacing Zn2+ from the XL-Zn2+ complex by ligand-to-ligand transfer process. The binding mechanism of intramolecular charge transfer (ICT) were proposed from fluorescence and UV-vis titrations, Job's plot, 1H NMR titration, HRMS and DFT calculations. The probe was proven to be suitable for actual samples detection of Zn2+ and Al3+ ions. The complex XL-Zn2+ and XL-Al3+ exhibited dramatic fluorescent "turn-off" properties for PPi and PPi/F- respectively through snatching metal ions and released free XL. Moreover, probe XL showed low biotoxicity and sequentially "off-on-off" fluorescent bio-imaging of Zn2+/Al3+ and PPi/F- in PC12 cells.
Collapse
Affiliation(s)
- Jiaxin Fu
- Henan Engineering Research Center of Industrial Recirculating Water Treatment, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, Henan, China
| | - Yongxin Chang
- Henan Engineering Research Center of Industrial Recirculating Water Treatment, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, Henan, China
| | - Bai Li
- Henan Engineering Research Center of Industrial Recirculating Water Treatment, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, Henan, China
| | - Xinhai Wang
- Henan Engineering Research Center of Industrial Recirculating Water Treatment, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, Henan, China
| | - Xinmei Xie
- Pharmaceutical Institute, Henan University, Kaifeng, Henan 475004, China.
| | - Kuoxi Xu
- Henan Engineering Research Center of Industrial Recirculating Water Treatment, College of Chemistry and Chemical Engineering, Henan University, Kaifeng 475004, Henan, China.
| |
Collapse
|
28
|
Zhou X, Zhang XP, Li W, Jiang J, Xu H, Ke Z, Phillips DL, Zhao C. Unraveling mechanisms of the uncoordinated nucleophiles: theoretical elucidations of the cleavage of bis( p-nitrophenyl) phosphate mediated by zinc-complexes with apical nucleophiles. RSC Adv 2019; 9:37696-37704. [PMID: 35541823 PMCID: PMC9075727 DOI: 10.1039/c9ra06737j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Accepted: 11/01/2019] [Indexed: 02/01/2023] Open
Abstract
A theoretical approach was used to investigate the hydrolytic cleavage mechanisms of the bis(p-nitrophenyl) phosphate (BNPP−) catalyzed by Zn(ii)-complexes featuring uncoordinated nucleophiles. Ligand-based and alternative solvent-based nucleophilic attack reaction models are proposed. The pKa values of the Zn(ii)-bound water molecules or ligands in the [Zn(LnH)(η-H2O)(H2O)]2+ (n = 1, 2 and 3) complexes, as well as the dimerization tendency of the mononuclear Zn(ii)-complexes, were found to significantly influence the reaction mechanisms. The Zn(ii)-L3 complexes were found to be more favorable for the hydrolytic cleavage of the BNPP−via a ligand-based nucleophilic attack pathway. This was due to the lower pKa value for the deprotonation of the oxime ligand, the hard dimerization of the mononuclear Zn(ii)-L3 species, and the presence of an uncoordinated nucleophile. The origins of the uncoordinated reactions were systematically elucidated. The theoretical results reported here are in good agreement with experimental observations and more importantly, help to elucidate the factors that influence intermolecular nucleophilic attack reactions with coordinated/uncoordinated nucleophiles. A theoretical approach was used to investigate the hydrolytic cleavage mechanisms of the bis(p-nitrophenyl) phosphate (BNPP−) catalyzed by Zn(ii)-complexes featuring uncoordinated nucleophiles.![]()
Collapse
Affiliation(s)
- Xiaoyu Zhou
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, Sun Yat-Sen University Guangzhou 510275 P. R. China
| | - Xue-Peng Zhang
- School of Chemisty and Chemical Engineering, Shaanxi Normal University Xi'an 710119 P. R. China
| | - Weikang Li
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, Sun Yat-Sen University Guangzhou 510275 P. R. China
| | - Jingxing Jiang
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, School of Materials Science and Engineering, Sun Yat-sen University Guangzhou 510275 P. R. China
| | - Huiying Xu
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, Sun Yat-Sen University Guangzhou 510275 P. R. China
| | - Zhuofeng Ke
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, School of Materials Science and Engineering, Sun Yat-sen University Guangzhou 510275 P. R. China
| | - David Lee Phillips
- Department of Chemistry, University of Hong Kong Pokfulam Road Hong Kong P. R. China
| | - Cunyuan Zhao
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, Sun Yat-Sen University Guangzhou 510275 P. R. China
| |
Collapse
|
29
|
Batha S, Arman H, Larionov OV, Musie GT. Zinc(II) complexes of a versatile heptadentate ligand as phosphohydrolase structural and functional mimics. Inorganica Chim Acta 2019. [DOI: 10.1016/j.ica.2019.119077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
|
30
|
Asadi Z, Nasrollahi N, Golchin M. A water-soluble metal–organic coordination polymer of Zn(II) Schiff base complex in interaction with DNA: diagnosing the mode of binding by in vitro studies. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2019. [DOI: 10.1007/s13738-019-01716-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
|
31
|
Viola A, Ferrazzano L, Martelli G, Cerisoli L, Ricci A, Tolomelli A, Cabri W. Novel insights into the chemistry of an old medicine: A general degradative pathway for penicillins from a piperacillin/tazobactam stability study. Eur J Pharm Sci 2019; 136:104957. [DOI: 10.1016/j.ejps.2019.104957] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Revised: 05/22/2019] [Accepted: 06/12/2019] [Indexed: 11/26/2022]
|
32
|
Razzaq A, Shamsi S, Ali A, Ali Q, Sajjad M, Malik A, Ashraf M. Microbial Proteases Applications. Front Bioeng Biotechnol 2019; 7:110. [PMID: 31263696 PMCID: PMC6584820 DOI: 10.3389/fbioe.2019.00110] [Citation(s) in RCA: 170] [Impact Index Per Article: 34.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Accepted: 05/01/2019] [Indexed: 11/13/2022] Open
Abstract
The use of chemicals around the globe in different industries has increased tremendously, affecting the health of people. The modern world intends to replace these noxious chemicals with environmental friendly products for the betterment of life on the planet. Establishing enzymatic processes in spite of chemical processes has been a prime objective of scientists. Various enzymes, specifically microbial proteases, are the most essentially used in different corporate sectors, such as textile, detergent, leather, feed, waste, and others. Proteases with respect to physiological and commercial roles hold a pivotal position. As they are performing synthetic and degradative functions, proteases are found ubiquitously, such as in plants, animals, and microbes. Among different producers of proteases, Bacillus sp. are mostly commercially exploited microbes for proteases. Proteases are successfully considered as an alternative to chemicals and an eco-friendly indicator for nature or the surroundings. The evolutionary relationship among acidic, neutral, and alkaline proteases has been analyzed based on their protein sequences, but there remains a lack of information that regulates the diversity in their specificity. Researchers are looking for microbial proteases as they can tolerate harsh conditions, ways to prevent autoproteolytic activity, stability in optimum pH, and substrate specificity. The current review focuses on the comparison among different proteases and the current problems faced during production and application at the industrial level. Deciphering these issues would enable us to promote microbial proteases economically and commercially around the world.
Collapse
Affiliation(s)
- Abdul Razzaq
- State Key Laboratory of Cotton Biology, Key Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Sadia Shamsi
- School of Medicine, Medical Sciences and Nutrition, The Institute of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - Arfan Ali
- 1-FB, Genetics, Four Brothers Group, Lahore, Pakistan
| | - Qurban Ali
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| | - Muhammad Sajjad
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| | - Arif Malik
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| | - Muhammad Ashraf
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| |
Collapse
|
33
|
Rahman AB, Imafuku H, Miyazawa Y, Kafle A, Sakai H, Saga Y, Aoki S. Catalytic Hydrolysis of Phosphate Monoester by Supramolecular Phosphatases Formed from a Monoalkylated Dizinc(II) Complex, Cyclic Diimide Units, and Copper(II) in Two-Phase Solvent System. Inorg Chem 2019; 58:5603-5616. [PMID: 30969761 DOI: 10.1021/acs.inorgchem.8b03586] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Design and synthesis of enzyme mimic with programmed molecular interaction among several building blocks including metal complexes and metal chelators is of intellectual and practical significance. The preparation of artificial enzymes that mimic the natural enzymes such as hydrolases, phosphatases, etc. remains a great challenge in the field of supramolecular chemistry. Herein we report on the design and synthesis of asymmetric (nonsymmetric) supermolecules by the 2:2:2 self-assembly of an amphiphilic zinc(II)-cyclen complex containing a 2,2'-bipyridyl linker and one long alkyl chain (Zn2L3), barbital analogues, and Cu2+ as model compounds of an enzyme alkaline phosphatase that catalyzes the hydrolysis of phosphate monoesters such as mono(4-nitrophenyl)phosphate at neutral pH in two-phase solvent system (H2O/CHCl3) in pH 7.4 and 37 °C. Hydrolytic activity of these complexes was found to be catalytic, and their catalytic turnover numbers are 3-4. The mechanistic studies based on the UV/vis and emission spectra of the H2O and CHCl3 phases of the reaction mixtures suggest that the hydrophilicity/hydrophobicity balance of the supramolecular catalysts is an important factor for catalytic activity.
Collapse
|
34
|
Hu Q, Jayasinghe-Arachchige VM, Zuchniarz J, Prabhakar R. Effects of the Metal Ion on the Mechanism of Phosphodiester Hydrolysis Catalyzed by Metal-Cyclen Complexes. Front Chem 2019; 7:195. [PMID: 31024887 PMCID: PMC6460053 DOI: 10.3389/fchem.2019.00195] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 03/14/2019] [Indexed: 12/01/2022] Open
Abstract
In this study, mechanisms of phosphodiester hydrolysis catalyzed by six di- and tetravalent metal-cyclen (M-C) complexes (Zn-C, Cu-C, Co-C, Ce-C, Zr-C and Ti-C) have been investigated using DFT calculations. The activities of these complexes were studied using three distinct mechanisms: (1) direct attack ( DA ), (2) catalyst-assisted ( CA ), and (3) water-assisted ( WA ). All divalent metal complexes (Zn-C, Cu-C and Co-C) coordinated to the BNPP substrate in a monodentate fashion and activated its scissile phosphoester bond. However, all tetravalent metal complexes (Ce-C, Zr-C, and Ti-C) interacted with BNPP in a bidentate manner and strengthened this bond. The DA mechanism was energetically the most feasible for all divalent M-C complexes, while the WA mechanism was favored by the tetravalent complexes, except Ce-C. The divalent complexes were found to be more reactive than their tetravalent counterparts. Zn-C catalyzed the hydrolysis with the lowest barrier among all M-C complexes, while Ti-C was the most reactive tetravalent complex. The activities of Ce-C and Zr-C, except Ti-C, were improved with an increase in the coordination number of the metal ion. The structural and mechanistic information provided in this study will be very helpful in the development of more efficient metal complexes for this critical reaction.
Collapse
Affiliation(s)
| | | | | | - Rajeev Prabhakar
- Department of Chemistry, University of Miami, Coral Gables, FL, United States
| |
Collapse
|
35
|
Erxleben A. Mechanistic Studies of Homo- and Heterodinuclear Zinc Phosphoesterase Mimics: What Has Been Learned? Front Chem 2019; 7:82. [PMID: 30847339 PMCID: PMC6393734 DOI: 10.3389/fchem.2019.00082] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Accepted: 01/30/2019] [Indexed: 11/13/2022] Open
Abstract
Phosphoesterases hydrolyze the phosphorus oxygen bond of phosphomono-, di- or triesters and are involved in various important biological processes. Carboxylate and/or hydroxido-bridged dizinc(II) sites are a widespread structural motif in this enzyme class. Much effort has been invested to unravel the mechanistic features that provide the enormous rate accelerations observed for enzymatic phosphate ester hydrolysis and much has been learned by using simple low-molecular-weight model systems for the biological dizinc(II) sites. This review summarizes the knowledge and mechanistic understanding of phosphoesterases that has been gained from biomimetic dizinc(II) complexes, showing the power as well as the limitations of model studies.
Collapse
Affiliation(s)
- Andrea Erxleben
- School of Chemistry, National University of Ireland Galway, Galway, Ireland
| |
Collapse
|
36
|
|
37
|
Jayasinghe‐Arachchige VM, Hu Q, Sharma G, Paul TJ, Lundberg M, Quinonero D, Parac‐Vogt TN, Prabhakar R. Hydrolysis of chemically distinct sites of human serum albumin by polyoxometalate: A hybrid QM/MM (ONIOM) study. J Comput Chem 2018; 40:51-61. [DOI: 10.1002/jcc.25528] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Revised: 06/22/2018] [Accepted: 06/23/2018] [Indexed: 12/28/2022]
Affiliation(s)
| | - Qiaoyu Hu
- Department of Chemistry University of Miami Coral Gables Florida 33146
| | - Gaurav Sharma
- Department of Chemistry University of Miami Coral Gables Florida 33146
| | - Thomas J. Paul
- Department of Chemistry University of Miami Coral Gables Florida 33146
| | - Marcus Lundberg
- Department of Chemistry ‐ Ångström Laboratory Uppsala University 751 21, Uppsala Sweden
| | - David Quinonero
- Department of Chemistry Universitat de les Illes Balears Palma de Mallorca Spain
| | | | - Rajeev Prabhakar
- Department of Chemistry University of Miami Coral Gables Florida 33146
| |
Collapse
|
38
|
Jędrzkiewicz D, Marszałek-Harych A, Ejfler J. Serendipitous Synthesis Found in the Nuances of Homoleptic Zinc Complex Formation. Inorg Chem 2018; 57:8169-8180. [DOI: 10.1021/acs.inorgchem.8b00550] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Dawid Jędrzkiewicz
- Faculty of Chemistry, University of Wroclaw, 14 F. Joliot-Curie, 50-383 Wrocław, Poland
| | | | - Jolanta Ejfler
- Faculty of Chemistry, University of Wroclaw, 14 F. Joliot-Curie, 50-383 Wrocław, Poland
| |
Collapse
|
39
|
Jeong K, Shim J, Chung WY, Kye YS, Kim D. Diisopropyl fluorophosphate (DFP) degradation activity using transition metal-dipicolylamine complexes. Appl Organomet Chem 2018. [DOI: 10.1002/aoc.4383] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Keunhong Jeong
- Department of Chemistry; Korea Military Academy; Seoul 01805 South Korea
| | - Joongmoo Shim
- Department of Chemistry; Korea Military Academy; Seoul 01805 South Korea
| | - Woo Young Chung
- Department of Chemistry; Korea Military Academy; Seoul 01805 South Korea
| | - Young Sik Kye
- Department of Chemistry; Korea Military Academy; Seoul 01805 South Korea
| | - Dongwook Kim
- Department of Chemistry; Korea Military Academy; Seoul 01805 South Korea
| |
Collapse
|
40
|
Matsuo T, Kono T, Shobu I, Ishida M, Gonda K, Hirota S. Global Structural Flexibility of Metalloproteins Regulates Reactivity of Transition Metal Ion in the Protein Core: An Experimental Study Using Thiol-subtilisin as a Model Protein. Chemistry 2018; 24:2767-2775. [DOI: 10.1002/chem.201705920] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Indexed: 12/20/2022]
Affiliation(s)
- Takashi Matsuo
- Graduate School of Materials Science; Nara Institute of Science and Technology (NAIST); 8916-5 Takayama-cho Ikoma Nara 630-0192 Japan
| | - Takamasa Kono
- Graduate School of Materials Science; Nara Institute of Science and Technology (NAIST); 8916-5 Takayama-cho Ikoma Nara 630-0192 Japan
| | - Isamu Shobu
- Graduate School of Materials Science; Nara Institute of Science and Technology (NAIST); 8916-5 Takayama-cho Ikoma Nara 630-0192 Japan
| | - Masaya Ishida
- Graduate School of Materials Science; Nara Institute of Science and Technology (NAIST); 8916-5 Takayama-cho Ikoma Nara 630-0192 Japan
| | - Katsuya Gonda
- Graduate School of Materials Science; Nara Institute of Science and Technology (NAIST); 8916-5 Takayama-cho Ikoma Nara 630-0192 Japan
| | - Shun Hirota
- Graduate School of Materials Science; Nara Institute of Science and Technology (NAIST); 8916-5 Takayama-cho Ikoma Nara 630-0192 Japan
| |
Collapse
|
41
|
Joshi P, Hussain N, Ali SR, Rishu R, Bhardwaj VK. Enhanced activity of trinuclear Zn(ii) complexes towards phosphate ester bond cleavage by introducing three-metal cooperativity. NEW J CHEM 2018. [DOI: 10.1039/c7nj03759g] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The catalytic efficiency (DNA binding followed by phosphate ester bond cleavage) of Zn(ii) complexes has been tuned by variation in the nuclearity, flexibility and coordination environment to explore the structure activity correlation.
Collapse
Affiliation(s)
- Pooja Joshi
- Department of Chemistry
- D.S.B. Campus
- Kumaun University
- Nainital
- India
| | - Navid Hussain
- Department of Chemistry
- Indian Institute of Technology Ropar
- Rupnagar
- India
| | - Shah Raj Ali
- Department of Chemistry
- D.S.B. Campus
- Kumaun University
- Nainital
- India
| | - Rishu Rishu
- Department of Chemistry
- MCM DAV College for Women
- Chandigarh-160036
- India
| | - Vimal K. Bhardwaj
- Department of Chemistry
- Indian Institute of Technology Ropar
- Rupnagar
- India
| |
Collapse
|
42
|
Gorelik A, Randriamihaja A, Illes K, Nagar B. A key tyrosine substitution restricts nucleotide hydrolysis by the ectoenzyme NPP5. FEBS J 2017; 284:3718-3726. [PMID: 28898552 DOI: 10.1111/febs.14266] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2017] [Revised: 08/28/2017] [Accepted: 09/08/2017] [Indexed: 01/21/2023]
Abstract
The ecto-nucleotide pyrophosphatase/phosphodiesterase (NPP) family of proteins mediates purinergic signaling by degrading extracellular nucleotides and also participates in phospholipid metabolism. NPP5 (ENPP5) is the least characterized member of this group and its specific role is unknown. This enzyme does not display activity on certain nucleotides and on other typical NPP substrates. In order to gain insights into its function, we determined the crystal structure of human and murine NPP5. Structural comparison with close homologs revealed a key phenylalanine to tyrosine substitution that prevents efficient hydrolysis of nucleotide diphosphates and triphosphates; reversal of this mutation enabled degradation of these molecules. Interestingly, NPP5 is able to cleave nicotinamide adenine dinucleotide (NAD), suggesting a potential role of this enzyme in NAD-based neurotransmission. An NPP5-specific metal binding motif is found adjacent to the active site, although its significance is unclear. These findings expand our understanding of substrate specificity within the NPP family. DATABASE Structural data are available in the Protein Data Bank under the accession numbers 5VEM, 5VEN, and 5VEO.
Collapse
Affiliation(s)
- Alexei Gorelik
- Department of Biochemistry and Groupe de Recherche Axé sur la Structure des Protéines, McGill University, Montreal, Canada
| | - Antsa Randriamihaja
- Department of Biochemistry and Groupe de Recherche Axé sur la Structure des Protéines, McGill University, Montreal, Canada
| | - Katalin Illes
- Department of Biochemistry and Groupe de Recherche Axé sur la Structure des Protéines, McGill University, Montreal, Canada
| | - Bhushan Nagar
- Department of Biochemistry and Groupe de Recherche Axé sur la Structure des Protéines, McGill University, Montreal, Canada
| |
Collapse
|
43
|
Phosphatase activity and DNA binding studies of dinuclear phenoxo-bridged zinc(II) complexes with an N,N,O-donor ligand and halide ions in a rare cis-configuration. Polyhedron 2017. [DOI: 10.1016/j.poly.2017.03.037] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
44
|
Zhang T, Sharma G, Paul TJ, Hoffmann Z, Prabhakar R. Effects of Ligand Environment in Zr(IV) Assisted Peptide Hydrolysis. J Chem Inf Model 2017; 57:1079-1088. [PMID: 28398040 DOI: 10.1021/acs.jcim.6b00781] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this DFT study, activities of 11 different N2O4, N2O3, and NO2 core containing Zr(IV) complexes, 4,13-diaza-18-crown-6 (I'N2O4), 1,4,10-trioxa-7,13-diazacyclopentadecane (I'N2O3), and 2-(2-methoxy)ethanol (I'NO2), respectively, and their analogues in peptide hydrolysis have been investigated. Based on the experimental information, these molecules were created by altering protonation states (singly protonated, doubly protonated, or doubly deprotonated) and number of their ligands. The energetics of the I'N2O4, and I'NO2 and their analogues predicted that both stepwise and concerted mechanisms occurred either with similar barriers, or the latter was more favorable than the former. They also showed that the doubly deprotonated form hydrolyzed the peptide bond with substantially lower barriers than the barriers for other protonation states. For NO2 core possessing complexes, Zr-(NO2)(OHH)(H2O/OH)n for n = 1-3, the hydroxyl group containing molecules were found to be more reactive than their water ligand possessing counterparts. The barriers for these complexes reduced with an increase in the coordination number (6-8) of the Zr(IV) ion. Among all 11 molecules, the NO2 core possessing and two hydroxyl group containing I'DNO2-2H complex was found to be the most reactive complex with a barrier of 28.9 kcal/mol. Furthermore, barriers of 27.5, 28.9, and 32.0 kcal/mol for hydrolysis of Gly-Glu (negative), Gly-Gly (neutral), and Gly-Lys (positive) substrates, respectively, by this complex were in agreement with experiments. The activities of these complexes were explained in terms of basicity of their ligand environment and nucleophilicity of the Zr(IV) center using metal-ligand distances, charge on the metal ion, and the metal-nucleophile distance as parameters. These results provide a deeper understanding of the functioning of these complexes and will help design Zr(IV)-based synthetic metallopeptidases.
Collapse
Affiliation(s)
- Tingting Zhang
- Department of Chemistry, University of Miami , Coral Gables, Florida 33146, United States
| | - Gaurav Sharma
- Department of Chemistry, University of Miami , Coral Gables, Florida 33146, United States
| | - Thomas J Paul
- Department of Chemistry, University of Miami , Coral Gables, Florida 33146, United States
| | - Zachary Hoffmann
- Department of Chemistry, University of Miami , Coral Gables, Florida 33146, United States
| | - Rajeev Prabhakar
- Department of Chemistry, University of Miami , Coral Gables, Florida 33146, United States
| |
Collapse
|
45
|
Barman SK, Mondal T, Koley D, Lloret F, Mukherjee R. A phenoxo-bridged dicopper(ii) complex as a model for phosphatase activity: mechanistic insights from a combined experimental and computational study. Dalton Trans 2017; 46:4038-4054. [PMID: 28271106 DOI: 10.1039/c6dt03514k] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
A μ-phenoxo-bis(μ2-1,3-acetato)-bridged dicopper(ii) complex [Cu(L1)(μ-O2CMe)2][NO3] (1) has been synthesized from the perspective of modeling phosphodiesterase activity. Structural characterization was done initially with 1·3Et2O (vapour diffusion of Et2O into MeOH solution of 1; poor crystal quality) and finally with its perchlorate salt [Cu(L1)(μ-O2CMe)2][ClO4]·1.375MeCN·0.25H2O, crystallized from vapour diffusion of n-pentane into a MeCN-MeOH mixture (comparatively better crystal quality). An asymmetric unit of such a crystal contains two independent molecules of compositions [Cu(L1)(μ-O2CMe)2][ClO4] and [Cu(L1)(μ-O2CMe)2(MeCN)][ClO4] (coordinated MeCN with 0.75 occupancy), and two molecules of MeCN and H2O (each H2O molecule with 0.25 occupancy) as the solvent of crystallization. These two cations, each having five-coordinate (μ-phenoxo)bis(μ-acetato)-bridged CuII ions, differ by only the coordination environment of only one CuII ion, which has a weakly coordinated acetonitrile molecule in its sixth position. Temperature-dependent magnetic studies on 1 reveal that the copper(ii) centres are antiferromagnetically coupled with the exchange-coupling constant J = -124(1) cm-1. Theoretically calculated J = -126.51 cm-1, employing a broken-symmetry DFT approach, is in excellent agreement with the experimental value. The dicopper(ii) complex has been found to be catalytically efficient in the hydrolysis of 2-hydroxypropyl-p-nitrophenylphosphate (HPNP). Detailed kinetic experiments and solution studies (potentiometry, species distribution and ESI-MS) were performed to elucidate the reaction mechanism. DFT calculations were performed to discriminate between different possible mechanistic pathways. The free-energy barrier for HPNP hydrolysis catalyzed by 1 is comparable to that obtained from the experimentally-determined value. The involvement of non-covalent (hydrogen-bonding) interaction has also been probed by DFT calculations. The activity of 1 is found to be the highest, compared to the structurally-characterized Mn, Co, Ni and Zn complexes of L1(-) reported earlier, under identical experimental conditions, in which each metal centre is six-coordinate.
Collapse
Affiliation(s)
- Suman K Barman
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208 016, India. and Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur 741 246, India
| | - Totan Mondal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur 741 246, India
| | - Debasis Koley
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur 741 246, India
| | - Francesc Lloret
- Departament de Química Inorgànica/Fundació General de la Universitat de València (FGUV)/Instituto de Ciencia, Molecular (ICMOL), Universitat de València, Polígono de la Coma, s/n, 46980-Paterna, València, Spain
| | - Rabindranath Mukherjee
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208 016, India. and Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur 741 246, India
| |
Collapse
|
46
|
Mandal S, Sikdar Y, Maiti DK, Sanyal R, Das D, Mukherjee A, Mandal SK, Biswas JK, Bauzá A, Frontera A, Goswami S. New pyridoxal based chemosensor for selective detection of Zn2+: Application in live cell imaging and phosphatase activity response. J Photochem Photobiol A Chem 2017. [DOI: 10.1016/j.jphotochem.2016.10.038] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
47
|
Tan SH, Normi YM, Leow ATC, Salleh AB, Murad AMA, Mahadi NM, Rahman MBA. Danger lurking in the "unknowns": structure-to-function studies of hypothetical protein Bleg1_2437 from Bacillus lehensis G1 alkaliphile revealed an evolutionary divergent B3 metallo-beta-lactamase. J Biochem 2017; 161:167-186. [PMID: 28175318 DOI: 10.1093/jb/mvw058] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Accepted: 08/22/2016] [Indexed: 11/12/2022] Open
Abstract
The effectiveness of β-lactam antibiotics as chemotherapeutic agents to treat bacterial infections is gradually threatened with the emergence of antibiotic resistance mechanism among pathogenic bacteria through the production metallo-β-lactamase (MBL). In this study, we discovered a novel hypothetical protein (HP) termed Bleg1_2437 from the genome of alkaliphilic Bacillus lehensis G1 which exhibited MBL-like properties of B3 subclass; but evolutionary divergent from other circulating B3 MBLs. Domain and sequence analysis of HP Bleg1_2437 revealed that it contains highly conserved Zn2+-binding residues such as H54, H56, D58, H59, H131 and H191, important for catalysis, similar with the subclass B3 of MBL. Built 3-D Bleg1_2437 structure exhibited an αββα sandwich layer similar to the well-conserved global topology of MBL superfamily. Other features include a ceiling and floor in the model which are important for accommodation and orientation of β-lactam antibiotics docked to the protein model showed interactions at varying degrees with residues in the binding pocket of Bleg1_2437. Hydrolysis activity towards several β-lactam antibiotics was proven through an in vitro assay using purified recombinant Bleg1_2437 protein. These findings highlight the presence of a clinically important and evolutionary divergent antibiotics-degrading enzyme within the pools of uncharacterized HPs.
Collapse
Affiliation(s)
- Soo Huei Tan
- Center for Enzyme and Microbial Technology (EMTECH), Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Yahaya M Normi
- Center for Enzyme and Microbial Technology (EMTECH), Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Adam Thean Chor Leow
- Center for Enzyme and Microbial Technology (EMTECH), Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Abu Bakar Salleh
- Center for Enzyme and Microbial Technology (EMTECH), Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Abdul Munir Abdul Murad
- School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Nor Muhammad Mahadi
- Malaysia Genome Institute, Ministry of Science, Technology and Innovation, Kajang, Selangor, Malaysia
| | - Mohd Basyaruddin Abdul Rahman
- Center for Enzyme and Microbial Technology (EMTECH), Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor, Malaysia.,Malaysia Genome Institute, Ministry of Science, Technology and Innovation, Kajang, Selangor, Malaysia.,Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| |
Collapse
|
48
|
Liu Y, Wang C, Xue D, Xiao M, Li C, Xiao J. Reactions Catalysed by a Binuclear Copper Complex: Aerobic Cross Dehydrogenative Coupling of N
-Aryl Tetrahydroisoquinolines. Chemistry 2017; 23:3051-3061. [DOI: 10.1002/chem.201604749] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Yuxia Liu
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education and School of Chemistry and Chemical Engineering; Shaanxi Normal University; Xi'an 710062 P. R. China
| | - Chao Wang
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education and School of Chemistry and Chemical Engineering; Shaanxi Normal University; Xi'an 710062 P. R. China
| | - Dong Xue
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education and School of Chemistry and Chemical Engineering; Shaanxi Normal University; Xi'an 710062 P. R. China
| | - Miao Xiao
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education and School of Chemistry and Chemical Engineering; Shaanxi Normal University; Xi'an 710062 P. R. China
| | - Chaoqun Li
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education and School of Chemistry and Chemical Engineering; Shaanxi Normal University; Xi'an 710062 P. R. China
| | - Jianliang Xiao
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education and School of Chemistry and Chemical Engineering; Shaanxi Normal University; Xi'an 710062 P. R. China
- Department of Chemistry; University of Liverpool; Liverpool L69 7ZD UK
| |
Collapse
|
49
|
Diez-Castellnou M, Martinez A, Mancin F. Phosphate Ester Hydrolysis: The Path From Mechanistic Investigation to the Realization of Artificial Enzymes. ADVANCES IN PHYSICAL ORGANIC CHEMISTRY 2017. [DOI: 10.1016/bs.apoc.2017.09.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
|
50
|
DNA binding, cleavage and cytotoxicity of a novel dimetallic Fe(III) triaza-cyclononane complex. Inorganica Chim Acta 2016. [DOI: 10.1016/j.ica.2016.02.044] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|