Computational Studies of the Effect of Shock Waves on the Binding of Model Complexes

The entropy of a complex molecule

Entropy is a central concept in the theory of coarse-graining. Through Einstein's formula, it provides the equilibrium probability distribution of the coarse-grained variables used to describe the system of interest. We study with molecular dynamics simulations the equilibrium probability distribution of thermal blobs representing at a coarse-grained level star polymer molecules in melt. Thermal blobs are characterized by the positions and momenta of the centers of mass, and internal energies of the molecules. We show that the entropy of the level of description of thermal blobs can be very well approximated as the sum of the thermodynamic entropy of each single molecule considered as isolated thermodynamic systems. The entropy of a single molecule depends on the intrinsic energy, involving only contributions from the atoms that make the molecule and not from the interactions with atoms of other molecules.

Advances in Quantum Mechanochemistry: Electronic Structure Methods and Force Analysis

In quantum mechanochemistry, quantum chemical methods are used to describe molecules under the influence of an external force. The calculation of geometries, energies, transition states, reaction rates, and spectroscopic properties of molecules on the force-modified potential energy surfaces is the key to gain an in-depth understanding of mechanochemical processes at the molecular level. In this review, we present recent advances in the field of quantum mechanochemistry and introduce the quantum chemical methods used to calculate the properties of molecules under an external force. We place special emphasis on quantum chemical force analysis tools, which can be used to identify the mechanochemically relevant degrees of freedom in a deformed molecule, and spotlight selected applications of quantum mechanochemical methods to point out their synergistic relationship with experiments.

Ultrasound as a cancer chemotherapy sensitizer: the gap between laboratory and bedside

INTRODUCTION

The use of ultrasound to sensitize chemotherapy has been explored, a large amount of encouraging preclinical data has been reported, and an increase in drug influx is considered the main mechanism, leading scientists to believe that ultrasonic chemotherapy will change clinical practice.

AREAS COVERED

Here we first outline the clinical efficacy of ultrasonic chemotherapy using data from controlled trials of high-intensity focused ultrasound (HIFU)-chemotherapy, and then discuss the gap between laboratory and bedside. Data from clinical trials showed that focused ultrasound enhanced anticancer drugs in only 35.0% (7/20) of trials. Preclinical trials indicate that ultrasound augments the action of drugs via multiple pathways. The effect of a transient increase in the intracellular drug level due to ultrasound can be counteracted by certain cellular factors, causing a lack of chemosensitization. The experimental method used can lead to biases in preclinical trials.

EXPERT OPINION

Chemotherapy should not be recommended in HIFU treatments at present. The use of HIFU-chemotherapy in digestive-tract cancers can provide feedback for preclinical and translational researches in ultrasonic chemotherapy. The clinical relevance of preclinical trials should be improved; the drug-ultrasound interactions, sequence effects, predictiveness of in vivo models, and adjuncts of ultrasonic sensitization should be particularly considered.