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Seo H, Prosser KE, Kalaj M, Karges J, Dick BL, Cohen SM. Evaluating Metal-Ligand Interactions of Metal-Binding Isosteres Using Model Complexes. Inorg Chem 2021; 60:17161-17172. [PMID: 34699201 DOI: 10.1021/acs.inorgchem.1c02433] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Bioisosteres are a useful approach to address pharmacokinetic liabilities and improve drug-like properties. Specific to developing metalloenzyme inhibitors, metal-binding pharmacophores (MBPs) have been combined with bioisosteres, to produce metal-binding isosteres (MBIs) as alternative scaffolds for use in fragment-based drug discovery (FBDD). Picolinic acid MBIs have been reported and evaluated for their metal-binding ability, pharmacokinetic properties, and enzyme inhibitory activity. However, their structural, electronic, and spectroscopic properties with metal ions other than Zn(II) have not been reported, which might reveal similarities and differences between MBIs and the parent MBPs. To this end, [M(TPA)(MBI)]+ (M = Ni(II) and Co(II), TPA = tris(2-pyridylmethyl)amine) is presented as a bioinorganic model system for investigating picolinic acid, four heterocyclic MBIs, and 2,2'-bipyridine. These complexes were characterized by X-ray crystallography as well as NMR, IR, and UV-vis spectroscopies, and their magnetic moments were accessed. In addition, [(TpPh,Me)Co(MBI)] (TpPh,Me = hydrotris(3,5-phenylmethylpyrazolyl)borate) was used as a second model compound, and the limitations and attributes of the two model systems are discussed. These results demonstrate that bioinorganic model complexes are versatile tools for metalloenzyme inhibitor design and can provide insights into the broader use of MBIs.
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Affiliation(s)
- Hyeonglim Seo
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Kathleen E Prosser
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Mark Kalaj
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Johannes Karges
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Benjamin L Dick
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Seth M Cohen
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
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2
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Thibon A, Karmazin‐Brelot L, Mandon D. Coordination Versatility and Amide Shift in Mononuclear Fe
II
Complexes with the Asymmetrical Tripod [(6‐Bromo‐2‐pyridyl)methyl][(6‐pivaloylamido‐2‐pyridyl)methyl](2‐pyridylmethyl)amine (BrMPPA). Eur J Inorg Chem 2013. [DOI: 10.1002/ejic.201201284] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Aurore Thibon
- Laboratoire de Chimie Biomimétique des Métaux de Transition, UMR CNRS 7177, Institut de Chimie de Strasbourg, Université de Strasbourg, Bâtiment Le Bel, 4 Rue Blaise Pascal, CS 90032, 67081 Strasbourg Cedex, France, Fax: +33‐3‐68851438, http://institut‐chimie.unistra.fr/
| | - Lydia Karmazin‐Brelot
- Service de Radiocristallographie, UMR CNRS no. 7177, Institut de Chimie de Strasbourg et Université de Strasbourg, 1, rue Blaise Pascal, BP 296/R8, 67008 Strasbourg Cedex, France
| | - Dominique Mandon
- Laboratoire de Chimie Biomimétique des Métaux de Transition, UMR CNRS 7177, Institut de Chimie de Strasbourg, Université de Strasbourg, Bâtiment Le Bel, 4 Rue Blaise Pascal, CS 90032, 67081 Strasbourg Cedex, France, Fax: +33‐3‐68851438, http://institut‐chimie.unistra.fr/
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3
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Alimi M, Allam A, Selkti M, Tomas A, Roussel P, Galardon E, Artaud I. Characterization of Cobalt(III) Hydroxamic Acid Complexes Based on a Tris(2-pyridylmethyl)amine Scaffold: Reactivity toward Cysteine Methyl Ester. Inorg Chem 2012; 51:9350-6. [DOI: 10.1021/ic301090t] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mickael Alimi
- Laboratoire de Chimie et Biochimie
Pharmacologiques et Toxicologiques, UMR 8601 CNRS, Université Paris Descartes, Sorbonne Paris Cité, 45 rue
des Saints Pères, 75270 Paris Cedex 06, France
| | - Anas Allam
- Laboratoire de Chimie et Biochimie
Pharmacologiques et Toxicologiques, UMR 8601 CNRS, Université Paris Descartes, Sorbonne Paris Cité, 45 rue
des Saints Pères, 75270 Paris Cedex 06, France
| | - Mohamed Selkti
- Laboratoire de Crystallographie
et RMN Biologiques, UMR 8015 CNRS, Université Paris Descartes, Sorbonne Paris Cité, 4 avenue
de l’Observatoire, 75270 Paris Cedex 06, France
| | - Alain Tomas
- Laboratoire de Crystallographie
et RMN Biologiques, UMR 8015 CNRS, Université Paris Descartes, Sorbonne Paris Cité, 4 avenue
de l’Observatoire, 75270 Paris Cedex 06, France
| | - Pascal Roussel
- Unité de Catalyse et Chimie
du Solide, UMR 8012 CNRS, Ecole Nationale Supérieure de Chimie de Lille BP 90108, 59652 Villeneuve d’Ascq
Cedex, France
| | - Erwan Galardon
- Laboratoire de Chimie et Biochimie
Pharmacologiques et Toxicologiques, UMR 8601 CNRS, Université Paris Descartes, Sorbonne Paris Cité, 45 rue
des Saints Pères, 75270 Paris Cedex 06, France
| | - Isabelle Artaud
- Laboratoire de Chimie et Biochimie
Pharmacologiques et Toxicologiques, UMR 8601 CNRS, Université Paris Descartes, Sorbonne Paris Cité, 45 rue
des Saints Pères, 75270 Paris Cedex 06, France
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4
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Graef T, Galezowska J, Dechert S, Meyer F. Decorating the Second Coordination Sphere in Pyrazolate-Based Dinickel(II) Complexes with H-Bond Donors. Eur J Inorg Chem 2011. [DOI: 10.1002/ejic.201100514] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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5
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Shook RL, Peterson SM, Greaves J, Moore C, Rheingold AL, Borovik A. Catalytic reduction of dioxygen to water with a monomeric manganese complex at room temperature. J Am Chem Soc 2011; 133:5810-7. [PMID: 21425844 PMCID: PMC3381988 DOI: 10.1021/ja106564a] [Citation(s) in RCA: 120] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
There have been numerous efforts to incorporate dioxygen into chemical processes because of its economic and environmental benefits. The conversion of dioxygen to water is one such example, having importance in both biology and fuel cell technology. Metals or metal complexes are usually necessary to promote this type of reaction and several systems have been reported. However, mechanistic insights into this conversion are still lacking, especially the detection of intermediates. Reported herein is the first example of a monomeric manganese(II) complex that can catalytically convert dioxygen to water. The complex contains a tripodal ligand with two urea groups and one carboxyamidopyridyl unit; this ligand creates an intramolecular hydrogen-bonding network within the secondary coordination sphere that aids in the observed chemistry. The manganese(II) complex is five-coordinate with an N(4)O primary coordination sphere; the oxygen donor comes from the deprotonated carboxyamido moiety. Two key intermediates were detected and characterized: a peroxo-manganese(III) species and a hybrid oxo/hydroxo-manganese(III) species (1). The formulation of 1 was based on spectroscopic and analytical data, including an X-ray diffraction analysis. Reactivity studies showed dioxygen was catalytically converted to water in the presence of reductants, such as diphenylhydrazine and hydrazine. Water was confirmed as a product in greater than 90% yield. A mechanism was proposed that is consistent with the spectroscopy and product distribution, in which the carboxyamido group switches between a coordinated ligand and a basic site to scavenge protons produced during the catalytic cycle. These results highlight the importance of incorporating intramolecular functional groups within the secondary coordination sphere of metal-containing catalysts.
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Affiliation(s)
- Ryan L. Shook
- Department of Chemistry, University of California-Irvine, 1102 Natural Science II, Irvine, CA 92697-2025
| | - Sonja M. Peterson
- Department of Chemistry, University of California-Irvine, 1102 Natural Science II, Irvine, CA 92697-2025
| | - John Greaves
- Department of Chemistry, University of California-Irvine, 1102 Natural Science II, Irvine, CA 92697-2025
| | - Curtis Moore
- Department of Chemistry and Biochemistry, University of California-San Diego, San Diego, 92093-0332
| | - Arnold L. Rheingold
- Department of Chemistry and Biochemistry, University of California-San Diego, San Diego, 92093-0332
| | - A.S. Borovik
- Department of Chemistry, University of California-Irvine, 1102 Natural Science II, Irvine, CA 92697-2025
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6
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Powell-Jia DA, Pham MTN, Ziller JW, Borovik AS. Nickel(II) complexes stabilized by bis[N-(6-pivalamido-2-pyridylmethyl)]benzylamine: Synthesis and characterization of complexes stabilized by a hydrogen bonding network. Inorganica Chim Acta 2010; 363:2728-2733. [PMID: 22745511 PMCID: PMC3382998 DOI: 10.1016/j.ica.2010.05.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Hydrogen bonds in metalloproteins are key in directing reactivity yet to be achieved in synthetic systems. We have been developing a synthetic system that uses hydrogen-bonding interactions to modulate the secondary coordination around a transition metal ion. This was accomplished with the ligand bis[N-(6-pivalamido-2-pyridylmethyl)]benzylamine (H(2)pmb), which contains two carboxyamido units appended from pyridine rings. Several nickel complexes were prepared and structurally characterized. In particular, we found that the appended carboxyamido groups either provide intramolecular H-bond donors or can be converted to bind directly to a metal center. We established that the complex Ni(II)H(2)pmb(Cl)(2) can be sequentially deprotonated with potassium tert-butoxide, causing coordination of the carboxyamido oxygen atoms and concomitant loss of the chloro ligands. The chloro ligands were also removed with silver(I) salts-in the presence of acetate ions, the complex Ni(II)H(2)pmb(κ(2)-OAc)(κ(1)-OAc) was isolated, in which an intramolecular H-bonding network occurs between the H(2)pmb ligand and the coordinate acetato ligands.
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Affiliation(s)
- Darla A Powell-Jia
- Department of Chemistry, University of California Irvine, 1102 Natural Science II, Irvine, CA 92697 USA
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Gong CMS, Poineau F, Czerwinski KR. Synthesis and characterization of the solid uranium(VI) dioxo-diacetohydroxamate complex. RADIOCHIM ACTA 2009. [DOI: 10.1524/ract.2007.95.8.439] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
A novel dry synthesis for the uranium(VI) dioxo-diacetohydroxamate (UAHA) complex has been developed. The complex was generated in >80% yield by mechanically grinding solid uranyl acetate dihydrate (UAc) with solid acetohydroxamic acid in stoichiometric amounts. The resulting UO2(AHA)2·4H2O solid is purified by washing with acetone. The stoichiometry was confirmedviacolorimetric assays for U(VI) and AHA. The analogous ferric trisacetohydroxamate complex (FeAHA) was synthesized for comparison. A novel dry synthesis for the uranium(VI) dioxo-diacetohydroxamate (UAHA) complex has been developed. The complex was generated in >80% yield by mechanically grinding solid uranyl acetate dihydrate (UAc) with solid acetohydroxamic acid in stoichiometric amounts. The resulting UO2(AHA)2·4H2O solid is purified by washing with acetone. The stoichiometry was confirmedviacolorimetric assays for U(VI) and AHA. The analogous ferric trisacetohydroxamate complex (FeAHA) was synthesized for comparison.The UAHA solid was extensively characterized by ultraviolet-visible (UV-vis), Fourier-transform infrared (FT-IR), and extended X-ray absorption fine structure (EXAFS) spectroscopies. The compound did not fluoresce after laser excitation. Proton nuclear magnetic resonance (NMR) spectra were obtained of the complex in D2O, acidified acetonitrile-d3, and DMSO-d6. The solubility was determined over a range of solvents. It was determined that in the purified solid, two bidentate AHA molecules bind to uranylviathe carbonyl and hydroxamate oxygen atoms, a structure analogous to known ferric, nickel, and lanthanum AHA complexes. In an acidic environment, binding is monodentate through the hydroxamate oxygen. And in aqueous solution, the UAHA complex assumes both binding moieties, depending on the pH. This pH-dependent speciation change is demonstrated for the first time.The easy synthesis and purification of UAHA enables researchers to strictly control reaction conditions; to eliminate interfering salts and water; and to study the complex in the solid-phase.
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8
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Berreau LM. COORDINATION AND BIOINORGANIC CHEMISTRY OF ARYL-APPENDED TRIS(2-PYRIDYLMETHYL)AMINE LIGANDS. COMMENT INORG CHEM 2007. [DOI: 10.1080/02603590701572940] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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9
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Rudzka K, Arif AM, Berreau LM. Glyoxalase I-type hemithioacetal isomerization reactivity of a mononuclear Ni(II) deprotonated amide complex. J Am Chem Soc 2007; 128:17018-23. [PMID: 17177453 DOI: 10.1021/ja0601336] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
The synthesis, characterization, and hemithioacetal isomerization reactivity of a mononuclear Ni(II) deprotonated amide complex, [(bppppa-)Ni]ClO4.CH3OH (1, bppppa- = monoanion of N,N-bis-[(6-phenyl-2-pyridyl)methyl]-N-[(6-pivaloylamido-2-pyridyl)methyl]amine), are reported. Complex 1 was characterized by X-ray crystallography, 1H NMR, UV-vis, FTIR, and elemental analysis. Treatment of 1 with an equimolar amount of the hemithioacetal PhC(O)CH(OH)SCD3 in dry acetonitrile results in the production of the thioester PhCH(OH)C(O)SCD3 in approximately 60% yield. This reaction is conveniently monitored via 2H NMR spectroscopy. A protonated analogue of 1, [(bppppa)Ni](ClO4)2 (2), is unreactive with the hemithioacetal, thus indicating the requirement of the anionic chelate ligand in 1 for hemithioacetal isomerization reactivity. Complex 1 is unreactive with the thioester product, PhCH(OH)C(O)SCD3, which indicates that the pKa value for the PhCH(OH)C(O)SCD3 proton of the thioester must be significantly higher than the pKa value of the C-H proton of the hemithioacetal (PhC(O)CH(OH)SCD3). Complex 1 is the first well-characterized Ni(II) coordination complex to exhibit reactivity relevant to Ni(II)-containing E. coli glyoxalase I. Treatment of NiBr2.2H2O with PhC(O)CH(OH)SCD3 in the presence of 1-methylpyrrolidine also yields thioester product, albeit the reaction is slower and involves the formation of multiple -SCD3 labeled species, as detected by 2H NMR spectroscopy. The results of this study provide the first insight into hemithioacetal isomerization promoted by a synthetic Ni(II) coordination complex versus a simple Ni(II) ion.
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Affiliation(s)
- Katarzyna Rudzka
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA
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10
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Wang WH, Liu WS, Wang YW, Li Y, Zheng LF, Wang DQ. Self-assembly and cytotoxicity study of waterwheel-like dinuclear metal complexes: The first metal complexes appended with multiple free hydroxamic acid groups. J Inorg Biochem 2007; 101:297-304. [PMID: 17125839 DOI: 10.1016/j.jinorgbio.2006.10.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2006] [Revised: 10/05/2006] [Accepted: 10/06/2006] [Indexed: 11/21/2022]
Abstract
Two waterwheel-like dinuclear complexes [M(2)(PHA)(4)(H(2)O)(2)] (M = Cu(II) (1), Zn(II) (2); HPHA = phthal-hydroxamic acid) appended with four free hydroxamic acid groups, namely, free hydroxamic acid metal complexes (FHAMCs) have been synthesized and characterized. The crystal structure of complex 1 was determined by single crystal X-ray diffraction, which adopts the paddlewheel motif with four bidentate carboxylate ligands joining two Cu(II) ions. The relative cytotoxicities of compounds 1 and 2 against SMMC-7721 and HO-8910 cell lines are similar and more predominant than HPHA (IC(50): Cu(II)>Zn(II)>>HPHA). The synergic effect of the bound water molecules, multiple free hydroxamic acid groups and dimetal active sites with bridging carboxylate may have significant impacts on their pharmacological activity. As the prototype for a new class of hydroxamic acid derivatives, the self-assembly of FHAMCs presents a promising new strategy in designing multiple hydroxamic acids with remarkable bioactivities.
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Affiliation(s)
- Wen-Hua Wang
- College of Chemistry and Chemical Engineering, State Key Laboratory of Applied Organic Chemistry, Lanzhou University, Lanzhou 730000, People's Republic of China
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Horn A, Fim L, Bortoluzzi AJ, Szpoganicz B, Silva MDS, Novak MA, Neto MB, Eberlin LS, Catharino RR, Eberlin MN, Fernandes C. Solid state and solution characterization of a new dinuclear nickel (II) complex: The search for synthetic models for urease. J Mol Struct 2006. [DOI: 10.1016/j.molstruc.2006.03.043] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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12
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Machkour A, Thallaj NK, Benhamou L, Lachkar M, Mandon D. The Coordination Chemistry of FeCl3 and FeCl2 to Bis[2-(2,3-dihydroxyphenyl)-6-pyridylmethyl](2-pyridylmethyl)amine: Access to a Diiron(III) Compound with an Unusual Pentagonal-Bipyramidal/Square-Pyramidal Environment. Chemistry 2006; 12:6660-8. [PMID: 16789056 DOI: 10.1002/chem.200600276] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Coordination of FeCl3 to the title ligand yields a mononuclear iron(III) complex 1, which was characterized by spectroscopic techniques and X-ray diffraction. The ligand is (kappa3-N) tridentate and the metal, which lies in a pseudo-octahedral environment, is bound to a phenolate group from the catechol substituent. The dichloroiron(II) complex 2 was easily obtained by metalation of the ligand with FeCl2 and characterized by various spectroscopic techniques. In their cyclic voltammograms both 1 and 2 display the same reversible FeII/FeIII wave at E1/2=10 mV (vs. SCE). Reduction of compound 1 with Zn/Hg yields 2', which displays identical properties to 2. Taken together, these findings indicate that in spite of the different oxidation state of the metal in 2, no major geometrical/structural change is observed at the metal center with respect to 1. The reaction of 2 with dioxygen in the absence of organic substrates proceeds extremely rapidly and yields compound 3, which is a diiron(III) derivative whose X-ray crystal structure is also reported. The possibility of a radical-based mechanism is discussed. Compound 3 displays an unusual geometry: one iron(III) center is seven-coordinate, whereas the other lies in a square-pyramidal environment. The two iron atoms are bridged by the catecholato substituents. To the best of our knowledge, 3 is the first example of a seven-coordinate iron(III) derivative with tris(2-pyridylmethyl)amine ligands.
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Affiliation(s)
- Ahmed Machkour
- Laboratoire de Chimie Biomimetique des Metaux de Transition, Institut de Chimie, UMR CNRS no. 7177-LC3, Université Louis Pasteur, Institut Le Bel, 4 rue Blaise Pascal, 67070 Strasbourg cedex, France
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