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Paoloni L, Rampino S, Barone V. Potential-Energy Surfaces for Ring-Puckering Motions of Flexible Cyclic Molecules through Cremer-Pople Coordinates: Computation, Analysis, and Fitting. J Chem Theory Comput 2019; 15:4280-4294. [PMID: 31244128 DOI: 10.1021/acs.jctc.9b00363] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Ring-puckering motion in 12 flexible cyclic molecules is investigated by calculation and analysis of two-dimensional potential-energy surfaces (PESs) using the so-called ring-puckering coordinates proposed by Cremer and Pople. The PESs are calculated by means of density-functional theory using a B2PLYP-D3BJ exchange-correlation functional with a maug-cc-pVTZ basis set, and results are compared to the available experimental and theoretical data. Special care is devoted to the aspect of symmetry in such two-dimensional PESs, which are here reported for the first time also for molecules whose planar form has symmetry lower than D5 h or C2 v. The issue of PES fitting and that of solving the nuclear dynamics using ring-puckering coordinates are also addressed. Analytical formulations of the computed PESs using suitable functional forms with a limited set of parameters are provided.
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Affiliation(s)
- Lorenzo Paoloni
- SMART Laboratory , Scuola Normale Superiore , Piazza dei Cavalieri 7 , 56126 Pisa , Italia
| | - Sergio Rampino
- SMART Laboratory , Scuola Normale Superiore , Piazza dei Cavalieri 7 , 56126 Pisa , Italia
| | - Vincenzo Barone
- SMART Laboratory , Scuola Normale Superiore , Piazza dei Cavalieri 7 , 56126 Pisa , Italia
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Audran G, Brémond P, Marque SR, Siri D, Santelli M. Energetics of the biosynthesis of prostanes from arachidonate. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.07.015] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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3
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Haidasz EA, Shah R, Pratt DA. The Catalytic Mechanism of Diarylamine Radical-Trapping Antioxidants. J Am Chem Soc 2014; 136:16643-50. [DOI: 10.1021/ja509391u] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Evan A. Haidasz
- Department of Chemistry, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
| | - Ron Shah
- Department of Chemistry, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
| | - Derek A. Pratt
- Department of Chemistry, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
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Cremer D. Theoretical Determination of Molecular Structure and Conformation. XI. The Puckering of Oxolanes. Isr J Chem 2013. [DOI: 10.1002/ijch.198300010] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Erden I, Gärtner C. An exceptionally simple and efficient synthesis of 6-methyl-6-vinylfulvene, and its oxidative transformations. Tetrahedron Lett 2009; 50:2381-2383. [PMID: 20161263 PMCID: PMC2700951 DOI: 10.1016/j.tetlet.2009.02.221] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
A new efficient synthesis of 6-methyl-6-vinylfulvene was developed, starting from the 6-(2-hydroxyethyl)-6-methylfulvene. With larger quantities of the title compound in hand, its photooxygenation with singlet oxygen was studied. Cyclization of the cyclopropanone intermediate to both vinyl moieties in the unsaturated system was observed, whereas the saturated endoperoxide gave mostly the cyclopentenone derivative. m-CPBA attacks exclusively the endocyclic double bonds and gives the 3-cyclopentenones via the unstable epoxides.
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Affiliation(s)
- Ihsan Erden
- San Francisco State University, Department of Chemistry and Biochemistry, 1600 Holloway Avenue, San Francisco, CA 94132, USA
| | - Christian Gärtner
- San Francisco State University, Department of Chemistry and Biochemistry, 1600 Holloway Avenue, San Francisco, CA 94132, USA
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Valente P, Avery TD, Taylor DK, Tiekink ERT. Synthesis and chemistry of 2,3-dioxabicyclo[2.2.2]octane-5,6-diols. J Org Chem 2009; 74:274-82. [PMID: 19035821 DOI: 10.1021/jo8020506] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
1,4-Disubstituted 2,3-dioxabicyclo[2.2.2]oct-5-enes were dihydroxylated with osmium tetroxide to yield diols anti to the peroxide linkage in a highly selective manner. Reduction of the peroxide bond furnished cyclohexane-1,2,3,4-tetraols with toxocarol relative stereochemistry in excellent yield. This new methodology was employed to synthesize the natural product (1S,2R,3S,4R,5R)-2-methyl-5-(propan-2-yl)cyclohexane-1,2,3,4-tetrol (1) in a short sequence from (R)-alpha-phellandrene. Moreover, during the study of the chemistry of 2,3-dioxabicyclo[2.2.2]octane-5,6-diols a hitherto unknown rearrangement was discovered which has wide applicability for the synthesis of 1,4-dicarbonyls, including optically enriched synthons. A broad range of mechanistic investigations applicable to this rearrangement are also reported.
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Affiliation(s)
- Peter Valente
- Department of Chemistry, The University of Adelaide, South Australia 5005, Australia
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Magri D, Workentin M. A Radical-Anion Chain Mechanism Initiated by Dissociative Electron Transfer to a Bicyclic Endoperoxide: Insight into the Fragmentation Chemistry of Neutral Biradicals and Distonic Radical Anions. Chemistry 2008; 14:1698-709. [DOI: 10.1002/chem.200701740] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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9
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Magri DC, Workentin MS. A radical-anion chain mechanism following dissociative electron transfer reduction of the model prostaglandin endoperoxide, 1,4-diphenyl-2,3-dioxabicyclo[2.2.1]heptane. Org Biomol Chem 2008; 6:3354-61. [DOI: 10.1039/b809356c] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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Galasso V, Kovač B, Modelli A. A theoretical and experimental study on the molecular and electronic structures of artemisinin and related drug molecules. Chem Phys 2007. [DOI: 10.1016/j.chemphys.2007.04.008] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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11
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Adam W, Bloodworth AJ. Chemistry of saturated bicyclic peroxides (the prostaglandin connection). Top Curr Chem (Cham) 2006; 97:121-58. [PMID: 7027536 DOI: 10.1007/bfb0037042] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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12
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Suzuki T, Nishida JI, Ohkita M, Tsuji T. Preparation, Structure, and Redox Reactions of Nine-Membered Cyclic Peroxides: A Novel Electrochromic System Undergoing Reversible Extrusion and Trapping of O2. Angew Chem Int Ed Engl 2000. [DOI: 10.1002/(sici)1521-3757(20000515)112:10<1874::aid-ange1874>3.0.co;2-s] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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13
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Nau WM, Adam W, Klapstein D, Sahin C, Walter H. Correlation of Oxidation and Ionization Potentials for Azoalkanes. J Org Chem 1997. [DOI: 10.1021/jo970574v] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Werner M. Nau
- Institut für Physikalische Chemie der Universität Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland, Institut für Organische Chemie der Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany, and Department of Chemistry, St. Francis Xavier University, Antigonish, Nova Scotia B2G 2W5, Canada
| | - Waldemar Adam
- Institut für Physikalische Chemie der Universität Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland, Institut für Organische Chemie der Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany, and Department of Chemistry, St. Francis Xavier University, Antigonish, Nova Scotia B2G 2W5, Canada
| | - Dieter Klapstein
- Institut für Physikalische Chemie der Universität Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland, Institut für Organische Chemie der Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany, and Department of Chemistry, St. Francis Xavier University, Antigonish, Nova Scotia B2G 2W5, Canada
| | - Coskun Sahin
- Institut für Physikalische Chemie der Universität Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland, Institut für Organische Chemie der Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany, and Department of Chemistry, St. Francis Xavier University, Antigonish, Nova Scotia B2G 2W5, Canada
| | - Herbert Walter
- Institut für Physikalische Chemie der Universität Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland, Institut für Organische Chemie der Universität Würzburg, Am Hubland, D-97074 Würzburg, Germany, and Department of Chemistry, St. Francis Xavier University, Antigonish, Nova Scotia B2G 2W5, Canada
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Cyclopropanones derived from saturated fulvene endoperoxides: Synthesis of highly oxygenated organic compounds. Tetrahedron Lett 1993. [DOI: 10.1016/s0040-4039(00)77596-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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16
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Chemistry of singlet oxygen: Isolation and characterization of a stable allene oxide from a fulvene endoperoxide. Tetrahedron Lett 1993. [DOI: 10.1016/s0040-4039(00)91767-2] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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17
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Takahashi Y, Morishima SI, Miyashi T. Electron transfer photochemistry of endoperoxides. J Photochem Photobiol A Chem 1992. [DOI: 10.1016/1010-6030(92)85040-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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18
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19
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Borseth DG, Lorenčak P, Badawi HM, Hillig KW, Kuczkowski R, Mendenhall G. The microwave spectrum, structure and dipole moment of cyclobutene ozonide (2,3,7-trioxabicyclo[2.2.1]heptane). J Mol Struct 1988. [DOI: 10.1016/0022-2860(88)80277-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Kohmoto S, Kasai S, Yamamoto M, Yamada K. Deoxygenat ion of 1,3-Diene 1,4-Endoperoxides by Tin(II) Chloride. CHEM LETT 1988. [DOI: 10.1246/cl.1988.1477] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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21
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Mruzek MN, Bloodworth AJ, Eggelte HJ. Mass spectral study of bicyclic peroxides. 1. Dioxabicyclo[n.2.2]alkanes and the corresponding dioxabicyclo[n.2.2]alkenes. ACTA ACUST UNITED AC 1987. [DOI: 10.1002/oms.1210221202] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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22
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Erden I, Amputch MA. Thermal decomposition of 7-isopropylidene-2,3-dioxabicyclo[2.2.1]heptane: Evidence for allene oxide and cyclopropanone intermediates. Tetrahedron Lett 1987. [DOI: 10.1016/s0040-4039(00)96382-2] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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The addition of singlet oxygen to alkoxy and trimethysiloxybutadienes. The synthesis of novel new peroxides. Tetrahedron Lett 1983. [DOI: 10.1016/s0040-4039(00)88323-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kondo T, Tanimoto M, Matsumoto M, Nomoto K, Achiba Y, Kimura K. Cyclic peroxides: dihedral angle around the peroxide bond by microwave and photoelectron spectroscopic studies. Tetrahedron Lett 1980. [DOI: 10.1016/s0040-4039(00)77776-8] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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28
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Klessinger M, Rademacher P. Konformationsanalyse durch Photoelektronen-Spektroskopie. Angew Chem Int Ed Engl 1979. [DOI: 10.1002/ange.19790911105] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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29
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Klessinger M, Rademacher P. Conformational Analysis by Photoelectron Spectroscopy. ACTA ACUST UNITED AC 1979. [DOI: 10.1002/anie.197908261] [Citation(s) in RCA: 35] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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