1
|
Derewenda ZS. On the centennials of the discoveries of the hydrogen bond and the structure of the water molecule: the short life and work of Eustace Jean Cuy (1897-1925). ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 2021; 77:362-378. [PMID: 34473092 DOI: 10.1107/s2053273321006987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2021] [Accepted: 07/07/2021] [Indexed: 11/10/2022]
Abstract
The bent structure of the water molecule, and its hydrogen-bonding properties, arguably rank among the most impactful discoveries in the history of chemistry. Although the fact that the H-O-H angle must deviate from linearity was inferred early in the 20th century, notably from the existence of the electric dipole moment, it was not clear what that angle should be and why. One hundred years ago, a young PhD student at the University of California, Berkeley, Eustace J. Cuy, rationalized the V-shape structure of a water molecule using the Lewis theory of a chemical bond, i.e. a shared electron pair, and its tetrahedral stereochemistry. He was inspired, in part, by the proposal of a weak (hydrogen) bond in water by two colleagues at Berkeley, Wendell Latimer and Worth Rodebush, who published their classic paper a year earlier. Cuy went on to suggest that other molecules, notably H2S and NH3, have similar structures, and presciently predicted that this architecture has broader consequences for the structure of water as a liquid. This short, but brilliant paper has been completely forgotten, perhaps due to the tragic death of the author at the age of 28; the hydrogen-bond study is also rarely recognized. One of the most impactful publications on the structure of liquid water, a classic treatise published in 1933 by John Bernal and Ralph Fowler, does not mention either of the two pioneering papers. In this essay, the background for the two discoveries is described, including the brief history of Lewis's research on the nature of the chemical bond, and the history of the discovery of the hydrogen bond, which inspired Cuy to look at the structure of the water molecule. This is - to the best of the author's knowledge - the first biographical sketch of Eustace J. Cuy.
Collapse
Affiliation(s)
- Zygmunt S Derewenda
- Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, 1340 Jefferson Park Avenue, Charlottesville, Virginia 22903, USA
| |
Collapse
|
2
|
Affiliation(s)
- John M. Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210
| | - Marc P. Coons
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210
| |
Collapse
|
3
|
Dye JL. The alkali metals: 200 years of surprises. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2015; 373:rsta.2014.0174. [PMID: 25666067 DOI: 10.1098/rsta.2014.0174] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Alkali metal compounds have been known since antiquity. In 1807, Sir Humphry Davy surprised everyone by electrolytically preparing (and naming) potassium and sodium metals. In 1808, he noted their interaction with ammonia, which, 100 years later, was attributed to solvated electrons. After 1960, pulse radiolysis of nearly any solvent produced solvated electrons, which became one of the most studied species in chemistry. In 1968, alkali metal solutions in amines and ethers were shown to contain alkali metal anions in addition to solvated electrons. The advent of crown ethers and cryptands as complexants for alkali cations greatly enhanced alkali metal solubilities. This permitted us to prepare a crystalline salt of Na(-) in 1974, followed by 30 other alkalides with Na(-), K(-), Rb(-) and Cs(-) anions. This firmly established the -1 oxidation state of alkali metals. The synthesis of alkalides led to the crystallization of electrides, with trapped electrons as the anions. Electrides have a variety of electronic and magnetic properties, depending on the geometries and connectivities of the trapping sites. In 2009, the final surprise was the experimental demonstration that alkali metals under high pressure lose their metallic character as the electrons are localized in voids between the alkali cations to become high-pressure electrides!
Collapse
Affiliation(s)
- James L Dye
- Department of Chemistry, Michigan State University, East Lansing, MI 48824, USA
| |
Collapse
|
4
|
Mason PE, Uhlig F, Vaněk V, Buttersack T, Bauerecker S, Jungwirth P. Coulomb explosion during the early stages of the reaction of alkali metals with water. Nat Chem 2015; 7:250-4. [DOI: 10.1038/nchem.2161] [Citation(s) in RCA: 73] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Accepted: 12/12/2014] [Indexed: 11/09/2022]
|
5
|
Zhong RL, Xu HL, Sun SL, Qiu YQ, Su ZM. The Excess Electron in a Boron Nitride Nanotube: Pyramidal NBO Charge Distribution and Remarkable First Hyperpolarizability. Chemistry 2012; 18:11350-5. [DOI: 10.1002/chem.201201570] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2012] [Indexed: 11/09/2022]
|
6
|
Marsalek O, Uhlig F, VandeVondele J, Jungwirth P. Structure, dynamics, and reactivity of hydrated electrons by ab initio molecular dynamics. Acc Chem Res 2012; 45:23-32. [PMID: 21899274 DOI: 10.1021/ar200062m] [Citation(s) in RCA: 77] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Understanding the properties of hydrated electrons, which were first observed using pulse radiolysis of water in 1962, is crucial because they are key species in many radiation chemistry processes. Although time-resolved spectroscopic studies and molecular simulations have shown that an electron in water (prepared, for example, by water photoionization) relaxes quickly to a localized, cavity-like structure ∼2.5 Å in radius, this picture has recently been questioned. In another experimental approach, negatively charged water clusters of increasing size were studied with photoelectron and IR spectroscopies. Although small water clusters can bind an excess electron, their character is very different from bulk hydrated species. As data on electron binding in liquid water have become directly accessible experimentally, the cluster-to-bulk extrapolations have become a topic of lively debate. Quantum electronic structure calculations addressing experimental measurables have, until recently, been largely limited to small clusters; extended systems were approached mainly with pseudopotential calculations combining a classical description of water with a quantum mechanical treatment of the excess electron. In this Account, we discuss our investigations of electrons solvated in water by means of ab initio molecular dynamics simulations. This approach, applied to a model system of a negatively charged cluster of 32 water molecules, allows us to characterize structural, dynamical, and reactive aspects of the hydrated electron using all of the system's valence electrons. We show that under ambient conditions, the electron localizes into a cavity close to the surface of the liquid cluster. This cavity is, however, more flexible and accessible to water molecules than an analogous area around negatively charged ions. The dynamical process of electron attachment to a neutral water cluster is strongly temperature dependent. Under ambient conditions, the electron relaxes in the liquid cluster and becomes indistinguishable from an equilibrated, solvated electron on a picosecond time scale. In contrast, for solid, cryogenic systems, the electron only partially localizes outside of the cluster, being trapped in a metastable, weakly bound "cushion-like" state. Strongly bound states under cryogenic conditions could only be prepared by cooling equilibrated, liquid, negatively charged clusters. These calculations allow us to rationalize how different isomers of electrons in cryogenic clusters can be observed experimentally. Our results also bring into question the direct extrapolation of properties of cryogenic, negatively charged water clusters to those of electrons in the bulk liquid. Ab initio molecular dynamics represents a unique computational tool for investigating the reactivity of the solvated electron in water. As a prototype, the electron-proton reaction was followed in the 32-water cluster. In accord with experiment, the molecular mechanism is a proton transfer process that is not diffusion limited, but rather controlled by a proton-induced deformation of the excess electron's solvent shell. We demonstrate the necessary ingredients of a successful density functional methodology for the hydrated electron that avoids potential pitfalls, such as self-interaction error, insufficient basis set, or lack of dispersion interactions. We also benchmark the density functional theory methods and outline the path to faithful ab initio simulations of dynamics and reactivity of electrons solvated in extended aqueous systems.
Collapse
Affiliation(s)
- Ondrej Marsalek
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 16610 Prague 6, Czech Republic
| | - Frank Uhlig
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 16610 Prague 6, Czech Republic
| | - Joost VandeVondele
- Physical Chemistry Institute, Zürich University, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Pavel Jungwirth
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 16610 Prague 6, Czech Republic
| |
Collapse
|
7
|
Herbert JM, Jacobson LD. Nature's most squishy ion: The important role of solvent polarization in the description of the hydrated electron. INT REV PHYS CHEM 2011. [DOI: 10.1080/0144235x.2010.535342] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
8
|
Verkade PE, de Vries KS, Wepster BM. Reactions of aliphatic halides with solutions of alkali metals in liquid ammonia: III. The reduction of optically active 6-chloro-2,6-dimethyloctane to the corresponding hydrocarbon. ACTA ACUST UNITED AC 2010. [DOI: 10.1002/recl.19640830406] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
9
|
Jacobson LD, Herbert JM. Polarization-Bound Quasi-Continuum States Are Responsible for the “Blue Tail” in the Optical Absorption Spectrum of the Aqueous Electron. J Am Chem Soc 2010; 132:10000-2. [DOI: 10.1021/ja1042484] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Leif D. Jacobson
- Department of Chemistry, The Ohio State University, Columbus, Ohio 43210
| | - John M. Herbert
- Department of Chemistry, The Ohio State University, Columbus, Ohio 43210
| |
Collapse
|
10
|
Abstract
Electrides are ionic solids with cavity-trapped electrons, which serve as the anions. Localization of electrons in well-defined trapping sites and their mutual interactions provide early examples of quantum confinement, a subject of intense current interest. We synthesized the first crystalline electride, Cs(+)(18-crown-6)(2)e(-), in 1983 and determined its structure in 1986; seven others have been made since. This Account describes progress in the synthesis of both organic and inorganic electrides and points to their promise as new electronic materials. Combined studies of solvated electrons in alkali metal solutions and the complexation of alkali cations by crown ethers and cryptands made electride synthesis possible. After our synthesis of crystalline alkalides, in which alkali metal anions and encapsulated alkali cations are present, we managed to grow crystalline electrides from solutions that contained complexed alkali cations and solvated electrons. Electride research is complicated by thermal instability. Above approximately -30 degrees C, trapped electrons react with the ether groups of crown ethers and cryptands. Aza-cryptands replace ether oxygens with less reactive tertiary amine groups, and using those compounds, we recently synthesized the first room-temperature-stable organic electride. The magnetic and electronic properties of electrides depend on the geometry of the trapping sites and the size of the open channels that connect them. Two extremes are Cs(+)(15-crown-5)(2)e(-) with nearly isolated trapped electrons and K(+)(cryptand 2.2.2)e(-), in which spin-pairing of electrons in adjacent cavities predominates below 400 K. These two electrides also differ in their electrical conductivity by nearly 10 orders of magnitude. The pronounced effect of defects on conductivity and on thermonic electron emission suggests that holes as well as electrons play important roles. Now that thermally stable organic electrides can be made, it should be possible to control the electron-hole ratio by incorporation of neutral complexant molecules. We expect that in further syntheses researchers will elaborate the parent aza-cryptands to produce new organic electrides. The promise of electrides as new electronic materials with low work functions led us and others to search for inorganic electrides. The body of extensive research studies of alkali metal inclusion in the pores of alumino-silicate zeolites provided the background for our studies of pure silica zeolites as hosts for M(+) and e(-) and our later use of nanoporous silica gel as a carrier of high concentrations of alkali metals. Both systems have some of the characteristics of inorganic electrides, but the electrons and cations share the same space. In 2003, researchers at the Tokyo Institute of Technology synthesized an inorganic electride that has separated electrons and countercations. This thermally stable electride has a number of potentially useful properties, such as air-stability, low work function, and metallic conductivity. Now that both organic and inorganic electrides have been synthesized, we expect that experimental and theoretical research on this interesting class of materials will accelerate.
Collapse
Affiliation(s)
- James L. Dye
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824
| |
Collapse
|
11
|
Zurek E, Edwards P, Hoffmann R. Lithium-Ammoniak-Lösungen: eine molekulare Betrachtung. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200900373] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
12
|
Zurek E, Edwards P, Hoffmann R. A Molecular Perspective on Lithium-Ammonia Solutions. Angew Chem Int Ed Engl 2009; 48:8198-232. [DOI: 10.1002/anie.200900373] [Citation(s) in RCA: 134] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
13
|
Affiliation(s)
- J. J. Lagowski
- a Department of Chemistry and Biochemistry , The University of Texas at Austin , Austin, Texas, USA
| |
Collapse
|
14
|
|
15
|
|
16
|
Dye JL. Electrides, Negatively Charged Metal Ions, and Related Phenomena. PROGRESS IN INORGANIC CHEMISTRY 2007. [DOI: 10.1002/9780470166338.ch4] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
|
17
|
Dye JL, Redko MY, Huang RH, Jackson JE. Role of Cation Complexants in the Synthesis of Alkalides and Electrides. ADVANCES IN INORGANIC CHEMISTRY 2006. [DOI: 10.1016/s0898-8838(06)59006-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
18
|
Edwards PP. The Electronic Properties of Metal Solutions in Liquid Ammonia and Related Solvents. ADVANCES IN INORGANIC CHEMISTRY 1982. [DOI: 10.1016/s0898-8838(08)60140-3] [Citation(s) in RCA: 64] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
19
|
|
20
|
Ebert G. Einfaches Verfahren zur Darstellung von Natriuml�sungen in fl�ssigem Ammoniak. Z Anorg Allg Chem 1958. [DOI: 10.1002/zaac.19582940304] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
21
|
|
22
|
|
23
|
|
24
|
Abstract
Measurements of the absorption spectra were made on solutions of alkali and alkaline earth metals in ammonia, methylamine, ethylamine, and mixed solvents. In ammonia, a single absorption band was measured which is common to all the metals examined. In the amines and in mixtures of ammonia with methylamine, however, bands were found which were characteristic of the metal employed. A hypothesis has been advanced to explain the existence of the different types of energy traps responsible for the variations in spectra.
Collapse
|
25
|
|