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Kuprešanin A, Jarić S, Novaković Z, Radović M, Pavlović M, Knežić T, Šašić Zorić L, Janjušević L, Pavlović Z. Future perspectives of GMO detection in agriculture: strategies for electrochemical nucleic acid detection. Mikrochim Acta 2025; 192:457. [PMID: 40571859 DOI: 10.1007/s00604-025-07267-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2025] [Accepted: 05/21/2025] [Indexed: 06/29/2025]
Abstract
The uncontrolled distribution of genetically modified organisms (GMO)-based food and feed is an increasing global concern, primarily due to limited information about their potential harmful effects. The growing diversity and complexity of GMOs present significant challenges for their detection, traceability, and safety monitoring. Traditionally, GMOs are detected using molecular methods, among which PCR methods are the most explored and are considered the gold standard. However, isothermal nucleic acid amplification methods, though less explored, hold great potential, especially when integrated with biosensor platforms, enabling the development of highly efficient and versatile biosensing systems. This paper provides a comprehensive overview of the recent advances in biosensors utilizing methods of isothermal nucleic acid amplification, highlighting their current progress and future perspectives. We discuss molecular methods for GMO detection, focusing on reaction conditions, amplification efficiency, and compatibility with various detection modalities. Additionally, we investigate the integration of various nanomaterials into transducers, such as electrochemical platforms, together with the electrochemical techniques and detection mechanisms, aiming to outline their synergistic effects with molecular techniques to improve detection sensitivity and enable real-time monitoring. Furthermore, we discuss the applications of GMO biosensors across diverse fields, including food safety and environmental monitoring, while addressing existing challenges and potential strategies for improving the performance, robustness, and practicality of biosensing platforms. Overall, this review highlights the significant progress achieved in GMO biosensors and underscores their promising role in advancing diagnostic and monitoring capabilities.
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Grants
- 6710 Science Fund of the Republic of Serbia
- 6710 Science Fund of the Republic of Serbia
- 6710 Science Fund of the Republic of Serbia
- 6710 Science Fund of the Republic of Serbia
- 6710 Science Fund of the Republic of Serbia
- 6710 Science Fund of the Republic of Serbia
- 6710 Science Fund of the Republic of Serbia
- 6710 Science Fund of the Republic of Serbia
- 6710 Science Fund of the Republic of Serbia
- 451-03-136/2025-03/200358 Ministarstvo nauke, tehnološkog razvoja i inovacija, Republika Srbija
- 451-03-136/2025-03/200358 Ministarstvo nauke, tehnološkog razvoja i inovacija, Republika Srbija
- 451-03-136/2025-03/200358 Ministarstvo nauke, tehnološkog razvoja i inovacija, Republika Srbija
- 451-03-136/2025-03/200358 Ministarstvo nauke, tehnološkog razvoja i inovacija, Republika Srbija
- 451-03-136/2025-03/200358 Ministarstvo nauke, tehnološkog razvoja i inovacija, Republika Srbija
- 451-03-136/2025-03/200358 Ministarstvo nauke, tehnološkog razvoja i inovacija, Republika Srbija
- 451-03-136/2025-03/200358 Ministarstvo nauke, tehnološkog razvoja i inovacija, Republika Srbija
- 451-03-136/2025-03/200358 Ministarstvo nauke, tehnološkog razvoja i inovacija, Republika Srbija
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Affiliation(s)
- Ana Kuprešanin
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Dr Zorana Đinđića 1, 21000, Novi Sad, Serbia
| | - Stefan Jarić
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Dr Zorana Đinđića 1, 21000, Novi Sad, Serbia
| | - Zorica Novaković
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Dr Zorana Đinđića 1, 21000, Novi Sad, Serbia
| | - Marko Radović
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Dr Zorana Đinđića 1, 21000, Novi Sad, Serbia
| | - Marija Pavlović
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Dr Zorana Đinđića 1, 21000, Novi Sad, Serbia
| | - Teodora Knežić
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Dr Zorana Đinđića 1, 21000, Novi Sad, Serbia
| | - Ljiljana Šašić Zorić
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Dr Zorana Đinđića 1, 21000, Novi Sad, Serbia
| | - Ljiljana Janjušević
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Dr Zorana Đinđića 1, 21000, Novi Sad, Serbia
| | - Zoran Pavlović
- BioSense Institute - Research and Development Institute for Information Technologies in Biosystems, University of Novi Sad, Dr Zorana Đinđića 1, 21000, Novi Sad, Serbia.
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2
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Sankar K, Kuzmanović U, Schaus SE, Galagan JE, Grinstaff MW. Strategy, Design, and Fabrication of Electrochemical Biosensors: A Tutorial. ACS Sens 2024; 9:2254-2274. [PMID: 38636962 DOI: 10.1021/acssensors.4c00043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2024]
Abstract
Advanced healthcare requires novel technologies capable of real-time sensing to monitor acute and long-term health. The challenge relies on converting a real-time quantitative biological and chemical signal into a desired measurable output. Given the success in detecting glucose and the commercialization of glucometers, electrochemical biosensors continue to be a mainstay of academic and industrial research activities. Despite the wealth of literature on electrochemical biosensors, reports are often specific to a particular application (e.g., pathogens, cancer markers, glucose, etc.), and most fail to convey the underlying strategy and design, and if it is transferable to detection of a different analyte. Here we present a tutorial review for those entering this research area that summarizes the basic electrochemical techniques utilized as well as discusses the designs and optimization strategies employed to improve sensitivity and maximize signal output.
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3
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Li L, Chen Z. Electrochemical aptamer biosensor for DNA detection based on label-free aptamers. Bioelectrochemistry 2023; 153:108494. [PMID: 37379739 DOI: 10.1016/j.bioelechem.2023.108494] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 06/18/2023] [Accepted: 06/21/2023] [Indexed: 06/30/2023]
Abstract
Electrochemical aptasensor has been broadly advanced for nucleic acid detection. However, it is a long-term goal to design an aptasensor with high specificity, flexibility, and simplicity. In this work, we develop a strategy of triblock DNA probe, which consists of two DNA probes at both ends and ployA fragments in the middle as probe-polyA-probe. PolyA fragment has high affinity to the surface of gold electrode, so it can be assembled on the electrode surface via polyA instead of traditional Au-S bonds. When the target DNA is simultaneously hybridized with the two capture probes, the hybridization stability can be improved due to the strong base stacking effect. [Ru(NH3)6]3+, as signal probe, can be electrostatically adsorbed on the negatively charged DNA skeleton. A wide linear range (10 pM-10 μM) is obtained with a detection limit of 2.9 pM. Our electrochemical aptasensor has good repeatability, stability, and specificity. More importantly, the electrochemical sensor can successfully detect DNA in human serum samples, which proves its practical value and extensive applicability in complex environment.
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Affiliation(s)
- Li Li
- School of Chemistry and Materials Engineering, Xinxiang University, Xinxiang 453003, China.
| | - Zhengbo Chen
- Department of Chemistry, Capital Normal University, Beijing 100048, China
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4
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Sankar K, Baer R, Grazon C, Sabatelle RC, Lecommandoux S, Klapperich CM, Galagan JE, Grinstaff MW. An Allosteric Transcription Factor DNA-Binding Electrochemical Biosensor for Progesterone. ACS Sens 2022; 7:1132-1137. [PMID: 35412319 PMCID: PMC9985479 DOI: 10.1021/acssensors.2c00133] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
We describe an electrochemical strategy to transduce allosteric transcription factor (aTF) binding affinity to sense steroid hormones. Our approach utilizes square wave voltammetry to monitor changes in current output as a progesterone (PRG)-specific aTF (SRTF1) unbinds from the cognate DNA sequence in the presence of PRG. The sensor detects PRG in artificial urine samples with sufficient sensitivity suitable for clinical applications. Our results highlight the capability of using aTFs as the biorecognition elements to develop electrochemical point-of-care biosensors for the detection of small-molecule biomarkers and analytes.
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Affiliation(s)
- Karthika Sankar
- Division of Materials Science and Engineering, Boston University, Boston, MA 02215, USA
| | - R Baer
- Department of Microbiology, Boston University, Boston, MA 02215, USA
| | - Chloé Grazon
- Department of Chemistry, Boston University, Boston, MA 02215, USA.,Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA.,University Bordeaux, CNRS, Bordeaux INP, LCPO, UMR 5629, F-33600, Pessac, France.,University Bordeaux, Institut des Sciences Moléculaires (CNRS UMR 5255), 33405 Talence, France
| | - Robert C. Sabatelle
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | | | - Catherine M. Klapperich
- Division of Materials Science and Engineering, Boston University, Boston, MA 02215, USA.,Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | - James E. Galagan
- Department of Microbiology, Boston University, Boston, MA 02215, USA.,Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA.,Corresponding Author James E. Galagan; , Mark W. Grinstaff;
| | - Mark W. Grinstaff
- Division of Materials Science and Engineering, Boston University, Boston, MA 02215, USA.,Department of Chemistry, Boston University, Boston, MA 02215, USA.,Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA.,Corresponding Author James E. Galagan; , Mark W. Grinstaff;
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5
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Khalil I, Hashem A, Nath AR, Muhd Julkapli N, Yehye WA, Basirun WJ. DNA/Nano based advanced genetic detection tools for authentication of species: Strategies, prospects and limitations. Mol Cell Probes 2021; 59:101758. [PMID: 34252563 DOI: 10.1016/j.mcp.2021.101758] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Revised: 06/20/2021] [Accepted: 07/06/2021] [Indexed: 10/20/2022]
Abstract
Authentication, detection and quantification of ingredients, and adulterants in food, meat, and meat products are of high importance these days. The conventional techniques for the detection of meat species based on lipid, protein and DNA biomarkers are facing challenges due to the poor selectivity, sensitivity and unsuitability for processed food products or complex food matrices. On the other hand, DNA based molecular techniques and nanoparticle based DNA biosensing strategies are gathering huge attention from the scientific communities, researchers and are considered as one of the best alternatives to the conventional strategies. Though nucleic acid based molecular techniques such as PCR and DNA sequencing are getting greater successes in species detection, they are still facing problems from its point-of-care applications. In this context, nanoparticle based DNA biosensors have gathered successes in some extent but not to a satisfactory stage to mark with. In recent years, many articles have been published in the area of progressive nucleic acid-based technologies, however there are very few review articles on DNA nanobiosensors in food science and technology. In this review, we present the fundamentals of DNA based molecular techniques such as PCR, DNA sequencing and their applications in food science. Moreover, the in-depth discussions of different DNA biosensing strategies or more specifically electrochemical and optical DNA nanobiosensors are presented. In addition, the significance of DNA nanobiosensors over other advanced detection technologies is discussed, focusing on the deficiencies, advantages as well as current challenges to ameliorate with the direction for future development.
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Affiliation(s)
- Ibrahim Khalil
- Nanotechnology and Catalysis Research Center (NANOCAT), Institute for Advanced Studies (IAS), Universiti Malaya, 50603, Kuala Lumpur, Malaysia; Healthcare Pharmaceuticals Ltd., Rajendrapur, Gazipur, Bangladesh
| | - Abu Hashem
- Nanotechnology and Catalysis Research Center (NANOCAT), Institute for Advanced Studies (IAS), Universiti Malaya, 50603, Kuala Lumpur, Malaysia; Microbial Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka, 1349, Bangladesh
| | - Amit R Nath
- Nanotechnology and Catalysis Research Center (NANOCAT), Institute for Advanced Studies (IAS), Universiti Malaya, 50603, Kuala Lumpur, Malaysia; Shenzhen Grubbs Institute and Department of Chemistry, Southern University of Science and Technology, 518055, China
| | - Nurhidayatullaili Muhd Julkapli
- Nanotechnology and Catalysis Research Center (NANOCAT), Institute for Advanced Studies (IAS), Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
| | - Wageeh A Yehye
- Nanotechnology and Catalysis Research Center (NANOCAT), Institute for Advanced Studies (IAS), Universiti Malaya, 50603, Kuala Lumpur, Malaysia
| | - Wan Jeffrey Basirun
- Nanotechnology and Catalysis Research Center (NANOCAT), Institute for Advanced Studies (IAS), Universiti Malaya, 50603, Kuala Lumpur, Malaysia; Department of Chemistry, Universiti Malaya, Malaysia
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6
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Clifford A, Das J, Yousefi H, Mahmud A, Chen JB, Kelley SO. Strategies for Biomolecular Analysis and Continuous Physiological Monitoring. J Am Chem Soc 2021; 143:5281-5294. [PMID: 33793215 DOI: 10.1021/jacs.0c13138] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Portable devices capable of rapid disease detection and health monitoring are crucial to decentralizing diagnostics from clinical laboratories to the patient point-of-need. Although technologies have been developed targeting this challenge, many require the use of reporter molecules or reagents that complicate the automation and autonomy of sensors. New work in the field has targeted reagentless approaches to enable breakthroughs that will allow personalized monitoring of a wide range of biomarkers on demand. This Perspective focuses on the ability of reagentless platforms to revolutionize the field of sensing by allowing rapid and real-time analysis in resource-poor settings. First, we will highlight advantages of reagentless sensing techniques, specifically electrochemical detection strategies. Advances in this field, including the development of wearable and in situ sensors capable of real-time monitoring of biomarkers such as nucleic acids, proteins, viral particles, bacteria, therapeutic agents, and metabolites, will be discussed. Reagentless platforms which allow for wash-free, calibration free-detection with increased dynamic range are highlighted as a key technological advance for autonomous sensing applications. Furthermore, we will highlight remaining challenges which must be overcome to enable widespread use of reagentless devices. Finally, future prospects and potential breakthroughs in precision medicine that will arise as a result of further development of reagentless sensing approaches are discussed.
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Affiliation(s)
- Amanda Clifford
- Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario M5S 3M2, Canada
| | - Jagotamoy Das
- Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario M5S 3M2, Canada
| | - Hanie Yousefi
- Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario M5S 3M2, Canada
| | - Alam Mahmud
- The Edward S. Rogers Sr. Department of Electrical and Computer Engineering, University of Toronto, Toronto, Ontario M5S 3G4, Canada
| | - Jenise B Chen
- Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| | - Shana O Kelley
- Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario M5S 3M2, Canada
- Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
- Institute for Biomaterials and Biomedical Engineering, University of Toronto, Toronto, Ontario M5S 3G9, Canada
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7
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Zhao B, Miao P, Hu Z, Zhang X, Geng X, Chen Y, Feng L. Signal-on electrochemical aptasensors with different target-induced conformations for prostate specific antigen detection. Anal Chim Acta 2021; 1152:338282. [PMID: 33648646 DOI: 10.1016/j.aca.2021.338282] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Revised: 01/03/2021] [Accepted: 01/31/2021] [Indexed: 02/06/2023]
Abstract
Prostate specific antigen (PSA) has become a potential biomarker for detecting prostate cancer (PCa) in the early stage. Herein, we report a target-induced resolution for the detection of PSA sensitively and specifically by amperometric electrochemical measurements. To meet a satisfactory performance, three conformations of pre-design DNA aptamers including two stem-loop structures and a double strand structure have been investigated and compared. All of them are immobilized on gold electrode as capture probes with redox-active molecular. The mechanism of signal transduction depends on molecular recognition events involving aptamer conformational changes, thus influencing the charge transfer. A short, single-stranded DNA (ssDNA) pseudoknot forming two stem-loop structural aptamers with labeled MB at the 3' -terminus was found to posse the highest signal variation than other structure when induced by PSA due to the strong conformational change. With the optimized capture strand, the aptasensor showed the peak current increase of MB by the binding relationship between PSA and the sensor over a wide concentration range of 4 magnitude orders. The proposed aptasensor exhibited a wide detection range from 10 pg/mL to 500 ng/mL with a low detection limit of 1.24 pg/mL (S/N = 3). Moreover, the electrochemical aptasensor demonstrated good reproducibility, sensitivity, selectivity, and reliability for the detection of PSA. We also found the aptasensor had a good response in the human serum samples, making this device easy to operate for the detection of the PSA physiological concentration.
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Affiliation(s)
- Biying Zhao
- Materials Genome Institute, Shanghai University, China
| | - Ping Miao
- Renji Hospital, Shanghai Jiaotong University School of Medicine, 160th Pujian Road, Shanghai, China
| | - Ziheng Hu
- Materials Genome Institute, Shanghai University, China
| | - Xinying Zhang
- Materials Genome Institute, Shanghai University, China
| | - Xue Geng
- Nanjing Normal University, Coll Chem & Mat Sci, Nanjing, 210046, Jiangsu, China
| | - Yingying Chen
- Materials Genome Institute, Shanghai University, China
| | - Lingyan Feng
- Materials Genome Institute, Shanghai University, China.
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8
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Washing-free Electrochemical Strategy to Detect Target DNA Utilizing Peroxidase Mimicking DNAzyme. BIOTECHNOL BIOPROC E 2020. [DOI: 10.1007/s12257-020-0272-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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9
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Abstract
In recent years, a diverse set of mechanisms have been developed that allow DNA strands with specific sequences to sense information in their environment and to control material assembly, disassembly, and reconfiguration. These sequences could serve as the inputs and outputs for DNA computing circuits, enabling DNA circuits to act as chemical information processors to program complex behavior in chemical and material systems. This review describes processes that can be sensed and controlled within such a paradigm. Specifically, there are interfaces that can release strands of DNA in response to chemical signals, wavelengths of light, pH, or electrical signals, as well as DNA strands that can direct the self-assembly and dynamic reconfiguration of DNA nanostructures, regulate particle assemblies, control encapsulation, and manipulate materials including DNA crystals, hydrogels, and vesicles. These interfaces have the potential to enable chemical circuits to exert algorithmic control over responsive materials, which may ultimately lead to the development of materials that grow, heal, and interact dynamically with their environments.
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Affiliation(s)
- Dominic Scalise
- Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA
| | - Rebecca Schulman
- Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA.,Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218, USA;
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10
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Shundrin LA, Os’kina IA, Irtegova IG, Poveshchenko AF. 9H-Thioxanthen-9-one S,S-dioxide based redox active labels for electrochemical detection of DNA duplexes immobilized on Au electrodes. MENDELEEV COMMUNICATIONS 2020. [DOI: 10.1016/j.mencom.2020.05.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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11
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Wang L, Wen Y, Yang X, Xu L, Liang W, Zhu Y, Wang L, Li Y, Li Y, Ding M, Ren S, Yang Z, Lv M, Zhang J, Ma K, Liu G. Ultrasensitive Electrochemical DNA Biosensor Based on a Label-Free Assembling Strategy Using a Triblock polyA DNA Probe. Anal Chem 2019; 91:16002-16009. [PMID: 31746200 DOI: 10.1021/acs.analchem.9b04757] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Multiblock DNA probe attracted a large amount of scientific attention, for the development of multitarget biosensor and improved specificity/sensitivity. However, the development of multiblock DNA probes highly relied on the chemical synthesis of organic linkers or nanomaterials, which limited their practicability and biological compatibility. In this work, we developed a label-free assembling strategy using a triblock DNA capture probe, which connects two DNA probes with its intrinsic polyA fragment (probe-PolyA-probe, PAP). The middle polyA segment has a high affinity to the gold electrode surface, leading to excellent reproducibility, stability, and regeneration of our biosensor. Two flanking capture probes were tandemly co-assembled on the electrode surface with consistent spatial relationship and exactly the same amount. When combined with the target DNA, the hybridization stability was improved, because of the strong base stacking effect of two capture probes. The sensitivity of our biosensor was proved to be 10 fM, with a wide analysis range between 10 fM to 1 nM. Our PAP-based biosensor showed excellent specificity when facing mismatched DNA sequences. Even single nucleotide polymorphisms can be distinguished by each probe. The excellent practicability of our biosensor was demonstrated by analyzing genomic DNA both with and without PCR amplification.
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Affiliation(s)
- Lele Wang
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
| | - Yanli Wen
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
| | - Xue Yang
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
| | - Li Xu
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
| | - Wen Liang
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
| | - Ying Zhu
- Division of Physical Biology & Bioimaging Center, Shanghai Synchrotron Radiation Facility, CAS Key Laboratory of Interfacial Physics and Technology , Shanghai Institute of Applied Physics, Chinese Academy of Sciences , Shanghai 201800 , People's Republic of China.,Shanghai Advanced Research Institute , Chinese Academy of Sciences , Shanghai 201210 , People's Republic of China
| | - Lihua Wang
- Division of Physical Biology & Bioimaging Center, Shanghai Synchrotron Radiation Facility, CAS Key Laboratory of Interfacial Physics and Technology , Shanghai Institute of Applied Physics, Chinese Academy of Sciences , Shanghai 201800 , People's Republic of China.,Shanghai Advanced Research Institute , Chinese Academy of Sciences , Shanghai 201210 , People's Republic of China
| | - Yan Li
- Division of Chemical Metrology and Analytical Science , National Institute of Metrology of China , Beijing 102200 , People's Republic of China
| | - Yuan Li
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
| | - Min Ding
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
| | - Shuzhen Ren
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
| | - Zhenzhou Yang
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
| | - Min Lv
- Division of Physical Biology & Bioimaging Center, Shanghai Synchrotron Radiation Facility, CAS Key Laboratory of Interfacial Physics and Technology , Shanghai Institute of Applied Physics, Chinese Academy of Sciences , Shanghai 201800 , People's Republic of China.,Shanghai Advanced Research Institute , Chinese Academy of Sciences , Shanghai 201210 , People's Republic of China
| | - Jichao Zhang
- Division of Physical Biology & Bioimaging Center, Shanghai Synchrotron Radiation Facility, CAS Key Laboratory of Interfacial Physics and Technology , Shanghai Institute of Applied Physics, Chinese Academy of Sciences , Shanghai 201800 , People's Republic of China.,Shanghai Advanced Research Institute , Chinese Academy of Sciences , Shanghai 201210 , People's Republic of China
| | - Kang Ma
- Division of Chemical Metrology and Analytical Science , National Institute of Metrology of China , Beijing 102200 , People's Republic of China
| | - Gang Liu
- Laboratory of Biometrology, Division of Chemistry , Shanghai Institute of Measurement and Testing Technology , 1500 Zhang Heng Road , Shanghai 201203 , People's Republic of China
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12
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Ding D, Gao P, Ma Q, Wang D, Xia F. Biomolecule-Functionalized Solid-State Ion Nanochannels/Nanopores: Features and Techniques. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2019; 15:e1804878. [PMID: 30756522 DOI: 10.1002/smll.201804878] [Citation(s) in RCA: 92] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Revised: 12/18/2018] [Indexed: 05/12/2023]
Abstract
Solid-state ion nanochannels/nanopores, the biomimetic products of biological ion channels, are promising materials in real-world applications due to their robust mechanical and controllable chemical properties. Functionalizations of solid-state ion nanochannels/nanopores by biomolecules pave a wide way for the introduction of varied properties from biomolecules to solid-state ion nanochannels/nanopores, making them smart in response to analytes or external stimuli and regulating the transport of ions/molecules. In this review, two features for nanochannels/nanopores functionalized by biomolecules are abstracted, i.e., specificity and signal amplification. Both of the two features are demonstrated from three kinds of nanochannels/nanopores: nucleic acid-functionalized nanochannels/nanopores, protein-functionalized nanochannels/nanopores, and small biomolecule-functionalized nanochannels/nanopores, respectively. Meanwhile, the fundamental mechanisms of these combinations between biomolecules and nanochannels/nanopores are explored, providing reasonable constructs for applications in sensing, transport, and energy conversion. And then, the techniques of functionalizations and the basic principle about biomolecules onto the solid-state ion nanochannels/nanopores are summarized. Finally, some views about the future developments of the biomolecule-functionalized nanochannels/nanopores are proposed.
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Affiliation(s)
- Defang Ding
- Engineering Research Center of Nano-Geomaterials of Ministry of Education, Faculty of Materials Science and Chemistry, China University of Geosciences (CUG), 388 Lumo Road, Wuhan, 430074, P. R. China
| | - Pengcheng Gao
- Engineering Research Center of Nano-Geomaterials of Ministry of Education, Faculty of Materials Science and Chemistry, China University of Geosciences (CUG), 388 Lumo Road, Wuhan, 430074, P. R. China
| | - Qun Ma
- Engineering Research Center of Nano-Geomaterials of Ministry of Education, Faculty of Materials Science and Chemistry, China University of Geosciences (CUG), 388 Lumo Road, Wuhan, 430074, P. R. China
| | - Dagui Wang
- Engineering Research Center of Nano-Geomaterials of Ministry of Education, Faculty of Materials Science and Chemistry, China University of Geosciences (CUG), 388 Lumo Road, Wuhan, 430074, P. R. China
| | - Fan Xia
- Engineering Research Center of Nano-Geomaterials of Ministry of Education, Faculty of Materials Science and Chemistry, China University of Geosciences (CUG), 388 Lumo Road, Wuhan, 430074, P. R. China
- State Key Laboratory of Material Processing and Die & Mould Technology, School of Material Sciences and Engineering, Huazhong University of Science and Technology (HUST), Wuhan, 430074, P. R. China
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13
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Fernández-Moreira V, Herrera RP, Gimeno MC. Anticancer properties of gold complexes with biologically relevant ligands. PURE APPL CHEM 2018. [DOI: 10.1515/pac-2018-0901] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Abstract
The present review highlights our findings in the field of antitumor gold complexes bearing biologically relevant molecules, such as DNA-bases, amino acids or peptide derivatives. The results show that very active complexes are achieved with this sort of ligands in several cancer cells. In these compounds the gold center is bonded to these biological molecules mainly through a sulfur atom belonging to a cysteine moiety or to a thionicotinic moiety as result of the functionalization of the biological compounds, and additionally phosphines or N-heterocyclic carbenes are present as ancillary ligands. These robust compounds are stable in the biological media and can be transported to their targets without previous deactivation. The presence of these scaffolds represents a good approach to obtain complexes with improved biologically activity, better transport and biodistribution to cancer cells. Thioredoxin reductase (TrxR) has been shown as the main target for these complexes and in some cases, DNA interactions has been also observed.
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Affiliation(s)
- Vanesa Fernández-Moreira
- Departamento de Química Inorgánica, Instituto de Síntesis Química y Catálisis Homogénea (ISQCH) , CSIC-Universidad de Zaragoza , C/Pedro Cerbuna, No. 12 , E-50009 Zaragoza , Spain
| | - Raquel P. Herrera
- Departamento de Química Orgánica, Laboratorio de Organocatálisis Asimétrica, Instituto de Síntesis Química y Catálisis Homogénea (ISQCH) , CSIC-Universidad de Zaragoza , C/Pedro Cerbuna, No. 12 , E-50009 Zaragoza , Spain
| | - M. Concepción Gimeno
- Departamento de Química Inorgánica, Instituto de Síntesis Química y Catálisis Homogénea (ISQCH) , CSIC-Universidad de Zaragoza , C/Pedro Cerbuna, No. 12 , E-50009 Zaragoza , Spain
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14
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Wang L, Liu D, Sun Y, Su J, Jin B, Geng L, Song YY, Huang X, Yang M. Signal-On Electrochemiluminescence of Self-Ordered Molybdenum Oxynitride Nanotube Arrays for Label-Free Cytosensing. Anal Chem 2018; 90:10858-10864. [PMID: 30126272 DOI: 10.1021/acs.analchem.8b02196] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
In this paper, a signal-on electrochemiluminescence (ECL) cytosensing platform was developed based on nitrogen doped molybdenum oxynitride nanotube arrays (MoO xN y NTs) for the first time. The MoO xN y NTs exhibited excellent cathodic ECL behavior with 2-(dibutylamino)-ethanol (DBAE) as a coreactant. Owing to the surface plasmon resonance (SPR) of Au triggered by the ECL emission, the generation of "hot electrons" on AuNPs hampered DBAE to give off electrons and leads to the ECL quenching. This process could be hindered via adding "barriers" on the surface of AuNPs, such as antibody molecules and cells, to achieve the signal recovery. Based on the quenching-recovering mechanism, a facile label-free ECL cytosensor was constructed. The linear response of HepG2 cells was in the range of 50-13800 cells mL-1 with a low detection limit of 47 cells mL-1 (S/N = 3). Moreover, the proposed ECL cytosensor exhibits a satisfying performance in the practical application. Due to the anodic formation from a Mo metal substrate, the valuable feature is that the MoO xN y NTs-based ECL cytosensor can be used directly, thereby providing a stable and simplified ECL cytosensing platform for future clinical applications.
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Affiliation(s)
- Lei Wang
- MIIT Key Laboratory of Critical Materials Technology for New Energy Conversion and Storage, School of Chemistry and Chemical Engineering , Harbin Institute of Technology , Harbin 150001 , China.,School of Material Science and Engineering , Harbin Institute of Technology , Harbin 150001 , China
| | - Danqing Liu
- School of Chemical and Environmental Engineering , Harbin University of Science and Technology , Harbin 150040 , China
| | - Yuling Sun
- School of Chemical and Environmental Engineering , Harbin University of Science and Technology , Harbin 150040 , China
| | - Jiaojiao Su
- MIIT Key Laboratory of Critical Materials Technology for New Energy Conversion and Storage, School of Chemistry and Chemical Engineering , Harbin Institute of Technology , Harbin 150001 , China
| | - Bowen Jin
- MIIT Key Laboratory of Critical Materials Technology for New Energy Conversion and Storage, School of Chemistry and Chemical Engineering , Harbin Institute of Technology , Harbin 150001 , China
| | - Lin Geng
- School of Material Science and Engineering , Harbin Institute of Technology , Harbin 150001 , China
| | - Yan-Yan Song
- College of Sciences , Northeastern University , Box 332, Shenyang 110004 , China
| | - Xin Huang
- MIIT Key Laboratory of Critical Materials Technology for New Energy Conversion and Storage, School of Chemistry and Chemical Engineering , Harbin Institute of Technology , Harbin 150001 , China
| | - Min Yang
- MIIT Key Laboratory of Critical Materials Technology for New Energy Conversion and Storage, School of Chemistry and Chemical Engineering , Harbin Institute of Technology , Harbin 150001 , China
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15
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Bousmail D, Chidchob P, Sleiman HF. Cyanine-Mediated DNA Nanofiber Growth with Controlled Dimensionality. J Am Chem Soc 2018; 140:9518-9530. [PMID: 29985613 DOI: 10.1021/jacs.8b04157] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Danny Bousmail
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A0B8, Canada
| | - Pongphak Chidchob
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A0B8, Canada
| | - Hanadi F. Sleiman
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, QC H3A0B8, Canada
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16
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Li C, Hu X, Lu J, Mao X, Xiang Y, Shu Y, Li G. Design of DNA nanostructure-based interfacial probes for the electrochemical detection of nucleic acids directly in whole blood. Chem Sci 2018; 9:979-984. [PMID: 29629164 PMCID: PMC5874986 DOI: 10.1039/c7sc04663d] [Citation(s) in RCA: 83] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Accepted: 11/26/2017] [Indexed: 12/29/2022] Open
Abstract
Here we report a robust and sensitive DNA nanostructure-based electrochemical (E-nanoDNA) sensor that utilizes tetrahedral DNA nanostructures (TDNs) as an interfacial probe to detect biomolecules in a single-step procedure. In this study, we have firstly demonstrated that the use of TDNs can significantly suppress electrochemical background signals compared to traditional linear DNA probes upon introduction of base mismatches in the edges of TDNs. After further optimization of the two functional strands in the TDNs, quantitative, one-step detection of DNA can be achieved in the picomolar range in less than 10 min, and directly in complex media. Moreover, the baseline drift of this biosensor can be greatly decreased even after several hours in flowing whole blood in vitro, which suggests that the sensor holds potential to be employed in live animals. Furthermore, through replacing functional strands with aptamers or other DNA elements, this E-nanoDNA sensor can be easily used to probe various analytes, broadening the application range of the proposed sensor.
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Affiliation(s)
- Chao Li
- State Key Laboratory of Pharmaceutical Biotechnology , Collaborative Innovation Center of Chemistry for Life Sciences , Department of Biochemistry , Nanjing University , Nanjing 210093 , P. R. China . ; ; Tel: +86-25-83593596
| | - Xiaolu Hu
- State Key Laboratory of Pharmaceutical Biotechnology , Collaborative Innovation Center of Chemistry for Life Sciences , Department of Biochemistry , Nanjing University , Nanjing 210093 , P. R. China . ; ; Tel: +86-25-83593596
| | - Jianyang Lu
- State Key Laboratory of Pharmaceutical Biotechnology , Collaborative Innovation Center of Chemistry for Life Sciences , Department of Biochemistry , Nanjing University , Nanjing 210093 , P. R. China . ; ; Tel: +86-25-83593596
| | - Xiaoxia Mao
- Laboratory of Biosensing Technology , School of Life Sciences , Shanghai University , Shanghai , 200444 , China
| | - Yang Xiang
- State Key Laboratory of Pharmaceutical Biotechnology , Collaborative Innovation Center of Chemistry for Life Sciences , Department of Biochemistry , Nanjing University , Nanjing 210093 , P. R. China . ; ; Tel: +86-25-83593596
| | - Yongqian Shu
- Department of Oncology , The First Affiliated Hospital of Nanjing Medical University , Nanjing 210029 , P. R. China .
| | - Genxi Li
- State Key Laboratory of Pharmaceutical Biotechnology , Collaborative Innovation Center of Chemistry for Life Sciences , Department of Biochemistry , Nanjing University , Nanjing 210093 , P. R. China . ; ; Tel: +86-25-83593596
- Laboratory of Biosensing Technology , School of Life Sciences , Shanghai University , Shanghai , 200444 , China
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17
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Lotfi Zadeh Zhad HR, Lai RY. Hexavalent Chromium as an Electrocatalyst in DNA Sensing. Anal Chem 2017; 89:13342-13348. [DOI: 10.1021/acs.analchem.7b03514] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hamid R. Lotfi Zadeh Zhad
- Department of Chemistry, University of Nebraska—Lincoln, Lincoln, Nebraska 68588-0304, United States
| | - Rebecca Y. Lai
- Department of Chemistry, University of Nebraska—Lincoln, Lincoln, Nebraska 68588-0304, United States
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18
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Gao F, Fan T, Wu J, Liu S, Du Y, Yao Y, Zhou F, Zhang Y, Liao X, Geng D. Proximity hybridization triggered hemin/G-quadruplex formation for construction a label-free and signal-on electrochemical DNA sensor. Biosens Bioelectron 2017; 96:62-67. [DOI: 10.1016/j.bios.2017.04.024] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2017] [Revised: 04/07/2017] [Accepted: 04/18/2017] [Indexed: 01/06/2023]
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19
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Evtugyn GA, Porfireva AV, Stoikov II. Electrochemical DNA sensors based on spatially distributed redox mediators: challenges and promises. PURE APPL CHEM 2017. [DOI: 10.1515/pac-2016-1124] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
AbstractDNA and aptasensors are widely used for fast and reliable detection of disease biomarkers, pharmaceuticals, toxins, metabolites and other species necessary for biomedical diagnostics. In the overview, the concept of spatially distributed redox mediators is considered with particular emphasis to the signal generation and biospecific layer assembling. The application of non-conductive polymers bearing redox labels, supramolecular carriers with attached DNA aptamers and redox active dyes and E-sensor concept are considered as examples of the approach announced.
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Affiliation(s)
- Gennady A. Evtugyn
- A.M.Butlerov’ Chemistry Institute of Kazan Federal University, 420008 Kazan, Russian Federation
| | - Anna V. Porfireva
- A.M.Butlerov’ Chemistry Institute of Kazan Federal University, 420008 Kazan, Russian Federation
| | - Ivan I. Stoikov
- A.M.Butlerov’ Chemistry Institute of Kazan Federal University, 420008 Kazan, Russian Federation
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20
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An electrochemical DNA sensor without electrode pre-modification. Biosens Bioelectron 2017; 91:110-114. [DOI: 10.1016/j.bios.2016.10.008] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2016] [Revised: 09/30/2016] [Accepted: 10/03/2016] [Indexed: 01/19/2023]
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21
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Abstract
A number of electrochemical DNA sensors based on the target-induced change in the conformation and/or flexibility of surface-bound oligonucleotides have been developed in recent years. These sensors, which are often termed E-DNA sensors, are comprised of an oligonucleotide probe modified with a redox label (e.g., methylene blue) at one terminus and attached to a gold electrode via a thiol-gold bond at the other. Binding of the target to the DNA probe changes its structure and dynamics, which, in turn, influences the efficiency of electron transfer to the interrogating electrode. Since electrochemically active contaminants are less common, these sensors are resistant to false-positive signals arising from the nonspecific adsorption of contaminants and perform well even when employed directly in serum, whole blood, and other realistically complex sample matrices. Moreover, because all of the sensor components are chemisorbed to the electrode, the E-DNA sensors are essentially label-free and readily reusable. To date, these sensors have achieved state-of-the-art sensitivity, while offering the unprecedented selectivity, reusability, and the operational convenience of direct electrochemical detection. This chapter reviews the recent advances in the development of both "signal-off" and "signal-on" E-DNA sensors. Critical aspects that dictate the stability and performance of these sensors are also addressed so as to provide a realistic overview of this oligonucleotide detection platform.
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Affiliation(s)
- Rebecca Y Lai
- University of Nebraska-Lincoln, Lincoln, NE, United States.
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22
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Sidhureddy B, Thiruppathi AR, Chen A. From graphite to interconnected reduced graphene oxide: one-pot synthesis and supercapacitor application. Chem Commun (Camb) 2017; 53:7828-7831. [DOI: 10.1039/c7cc03060f] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An innovative one-pot approach for the scalable production of novel interconnected reduced graphene oxide (IC-RGO) is demonstrated, and we name it the streamlined Hummers method (SHM).
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Affiliation(s)
| | | | - Aicheng Chen
- Department of Chemistry
- Lakehead University
- Thunder Bay
- Canada
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23
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Ghobadi AF, Jayaraman A. Effects of Polymer Conjugation on Hybridization Thermodynamics of Oligonucleic Acids. J Phys Chem B 2016; 120:9788-99. [DOI: 10.1021/acs.jpcb.6b06970] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Ahmadreza F. Ghobadi
- Department
of Chemical and Biomolecular Engineering, Colburn Laboratory, University of Delaware, 150 Academy Street, Newark, Delaware 19711, United States
| | - Arthi Jayaraman
- Department
of Chemical and Biomolecular Engineering, Colburn Laboratory, University of Delaware, 150 Academy Street, Newark, Delaware 19711, United States
- Department
of Material Science and Engineering, University of Delaware, Newark, Delaware 19711, United States
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24
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Trinh T, Chidchob P, Bazzi HS, Sleiman HF. DNA micelles as nanoreactors: efficient DNA functionalization with hydrophobic organic molecules. Chem Commun (Camb) 2016; 52:10914-7. [PMID: 27533528 DOI: 10.1039/c6cc04970b] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
We report a micelle-templated method to enhance the reactivity of DNA with highly hydrophobic molecules. Lipids, chromophores and polymers can be conjugated to DNA in high yield and under mild conditions. This method expands the range of DNA-templated reactions for DNA-encoded libraries, oligonucleotide and drug delivery, nanopore mimetics and DNA nanotechnology.
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Affiliation(s)
- Tuan Trinh
- Department of Chemistry and Center for Self-Assembled Chemical Structures, McGill University, 801 Sherbrooke Street West, Montreal, Quebec, Canada H3A 0B8.
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25
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Parlak O, Turner AP. Switchable bioelectronics. Biosens Bioelectron 2016; 76:251-65. [DOI: 10.1016/j.bios.2015.06.023] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2015] [Revised: 06/09/2015] [Accepted: 06/11/2015] [Indexed: 12/26/2022]
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26
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27
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Silambarasan K, Narendra Kumar AV, Joseph J. K4[Fe(CN)6] immobilized anion sensitive protonated amine functionalized polysilsesquioxane films for ultra-low electrochemical detection of dsDNA. Phys Chem Chem Phys 2016; 18:7468-74. [DOI: 10.1039/c6cp00283h] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We describe the ultra-low detection of dsDNA molecule using redox couple, ferro/ferricyanide immobilized in PSQ films possessing protonated amine functional groups by electrochemical impedance spectroscopy.
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Affiliation(s)
- Krishnamoorthy Silambarasan
- Electrodics and Electrocatalysis Division
- CSIR-Central Electrochemical Research Institute
- Karaikudi – 630003
- India
| | | | - James Joseph
- Electrodics and Electrocatalysis Division
- CSIR-Central Electrochemical Research Institute
- Karaikudi – 630003
- India
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28
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Kurzątkowska K, Sirko A, Zagórski-Ostoja W, Dehaen W, Radecka H, Radecki J. Electrochemical Label-free and Reagentless Genosensor Based on an Ion Barrier Switch-off System for DNA Sequence-Specific Detection of the Avian Influenza Virus. Anal Chem 2015; 87:9702-9. [DOI: 10.1021/acs.analchem.5b01988] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Katarzyna Kurzątkowska
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland
| | - Agnieszka Sirko
- Institute
of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego
5A, 02-106 Warsaw, Poland
| | | | - Wim Dehaen
- Department
of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Hanna Radecka
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland
| | - Jerzy Radecki
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland
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29
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Li P, Ge B, Ou LML, Yao Z, Yu HZ. DNA-Redox Cation Interaction Improves the Sensitivity of an Electrochemical Immunosensor for Protein Detection. SENSORS 2015; 15:20543-56. [PMID: 26307986 PMCID: PMC4570436 DOI: 10.3390/s150820543] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Revised: 07/31/2015] [Accepted: 08/12/2015] [Indexed: 01/15/2023]
Abstract
A simple DNA-redox cation interaction enhancement strategy has been developed to improve the sensitivity of electrochemical immunosensors for protein detection. Instead of labeling with fluorophores or redox-active groups, the detection antibodies were tethered with DNA single strands. Based on the electrostatic interaction between redox cations ([Ru(NH3)6]3+) and negatively charged DNA backbone, enhanced electrochemical signals were obtained. Human chorionic gonadotropin (hCG) detection has been performed as a trial analysis. A linear response range up to the concentration of 25 mIU/mL and a detection limit of 1.25 mIU/mL have been achieved, both are comparable with the ultrasensitive enzyme-linked immunosorbent assay (ELISA) tests. The method also shows great selectivity towards hCG over other hormones such as thyroid stimulating hormone (TSH) and follicle stimulating hormone (FSH). By and large, our approach bears the merits of cost effectiveness and simplicity of instrumentation in comparison with conventional optical detection methods.
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Affiliation(s)
- Ping Li
- Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
| | - Bixia Ge
- Biogate Laboratories Ltd., 110-4238 Lozells Avenue, Burnaby, BC V5A 0C4, Canada.
| | - Lily M-L Ou
- Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
- Biogate Laboratories Ltd., 110-4238 Lozells Avenue, Burnaby, BC V5A 0C4, Canada.
| | - Zhihui Yao
- Biogate Laboratories Ltd., 110-4238 Lozells Avenue, Burnaby, BC V5A 0C4, Canada.
| | - Hua-Zhong Yu
- Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
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30
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Zheng J, Yang R, Shi M, Wu C, Fang X, Li Y, Li J, Tan W. Rationally designed molecular beacons for bioanalytical and biomedical applications. Chem Soc Rev 2015; 44:3036-55. [PMID: 25777303 PMCID: PMC4431697 DOI: 10.1039/c5cs00020c] [Citation(s) in RCA: 267] [Impact Index Per Article: 26.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Nucleic acids hold promise as biomolecules for future applications in biomedicine and biotechnology. Their well-defined structures and compositions afford unique chemical properties and biological functions. Moreover, the specificity of hydrogen-bonded Watson-Crick interactions allows the construction of nucleic acid sequences with multiple functions. In particular, the development of nucleic acid probes as essential molecular engineering tools will make a significant contribution to advancements in biosensing, bioimaging and therapy. The molecular beacon (MB), first conceptualized by Tyagi and Kramer in 1996, is an excellent example of a double-stranded nucleic acid (dsDNA) probe. Although inactive in the absence of a target, dsDNA probes can report the presence of a specific target through hybridization or a specific recognition-triggered change in conformation. MB probes are typically fluorescently labeled oligonucleotides that range from 25 to 35 nucleotides (nt) in length, and their structure can be divided into three components: stem, loop and reporter. The intrinsic merit of MBs depends on predictable design, reproducibility of synthesis, simplicity of modification, and built-in signal transduction. Using resonance energy transfer (RET) for signal transduction, MBs are further endowed with increased sensitivity, rapid response and universality, making them ideal for chemical sensing, environmental monitoring and biological imaging, in contrast to other nucleic acid probes. Furthermore, integrating MBs with targeting ligands or molecular drugs can substantially support their in vivo applications in theranositics. In this review, we survey advances in bioanalytical and biomedical applications of rationally designed MBs, as they have evolved through the collaborative efforts of many researchers. We first discuss improvements to the three components of MBs: stem, loop and reporter. The current applications of MBs in biosensing, bioimaging and therapy will then be described. In particular, we emphasize recent progress in constructing MB-based biosensors in homogeneous solution or on solid surfaces. We expect that such rationally designed and functionalized MBs will open up new and exciting avenues for biological and medical research and applications.
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Affiliation(s)
- Jing Zheng
- Molecular Science and Biomedicine Laboratory, State Key Laboratory for Chemo/Bio-Sensing and Chemometrics, College of Chemistry and Chemical Engineering, and Collaborative Research Center of Molecular Engineering for Theranostics, Hunan University, Changsha 410082, China
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31
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Gao F, Du L, Zhang Y, Tang D, Du Y. Molecular beacon mediated circular strand displacement strategy for constructing a ratiometric electrochemical deoxyribonucleic acid sensor. Anal Chim Acta 2015; 883:67-73. [PMID: 26088778 DOI: 10.1016/j.aca.2015.04.058] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2015] [Revised: 04/24/2015] [Accepted: 04/25/2015] [Indexed: 11/30/2022]
Abstract
A novel ratiometric electrochemical sensor for sensitive and selective determination of deoxyribonucleic acid (DNA) had been developed based on signal-on and signal-off strategy. The target DNA hybridized with the loop portion of ferrocene (Fc) labeled hairpin probe immobilized on the gold electrode (GE), the Fc away from the surface of GE and the methylene blue (MB) was attached to an electrode surface by hybridization between hairpin probe and MB labeled primer. Such conformational changes resulted in the oxidation peak current of Fc decreased and that of MB increased, and the changes of dual signals are linear with the concentration of DNA. Furthermore, with the help of strand-displacement polymerization, polymerase catalyzed the extension of the primer and the sequential displacement of the target DNA, which led to the release of target and another polymerization cycle. Thus the circular strand displacement produced the multiplication of the MB confined near the GE surface and Fc got away from the GE surface. Therefore, the recognition of target DNA resulted in both the "signal-off" of Fc and the "signal-on" of MB for dual-signal electrochemical ratiometric readout. The dual signal strategy offered a dramatic enhancement of the stripping response. The dynamic range of the target DNA detection was from 10(-13) to 10(-8) mol L(-1) with a detection limit down to 28 fM level. Compared with the single signaling electrochemical sensor, the dual-signaling electrochemical sensing strategy developed in this paper was more selective. It would have important applications in the sensitive and selective electrochemical determination of other small molecules and proteins.
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Affiliation(s)
- Fenglei Gao
- Jiangsu Key Laboratory of New Drug Research and Clinical Pharmacy, School of Pharmacy, Xuzhou Medical College, 221004 Xuzhou, China.
| | - Lili Du
- Jiangsu Key Laboratory of New Drug Research and Clinical Pharmacy, School of Pharmacy, Xuzhou Medical College, 221004 Xuzhou, China
| | - Yu Zhang
- Jiangsu Key Laboratory of New Drug Research and Clinical Pharmacy, School of Pharmacy, Xuzhou Medical College, 221004 Xuzhou, China
| | - Daoquan Tang
- Jiangsu Key Laboratory of New Drug Research and Clinical Pharmacy, School of Pharmacy, Xuzhou Medical College, 221004 Xuzhou, China
| | - Yan Du
- Jiangsu Key Laboratory of New Drug Research and Clinical Pharmacy, School of Pharmacy, Xuzhou Medical College, 221004 Xuzhou, China
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32
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Qi H, Huang G, Han Y, Zhang X, Li Y, Pingguan-Murphy B, Lu TJ, Xu F, Wang L. Engineering artificial machines from designable DNA materials for biomedical applications. TISSUE ENGINEERING PART B-REVIEWS 2015; 21:288-97. [PMID: 25547514 DOI: 10.1089/ten.teb.2014.0494] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Deoxyribonucleic acid (DNA) emerges as building bricks for the fabrication of nanostructure with complete artificial architecture and geometry. The amazing ability of DNA in building two- and three-dimensional structures raises the possibility of developing smart nanomachines with versatile controllability for various applications. Here, we overviewed the recent progresses in engineering DNA machines for specific bioengineering and biomedical applications.
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Affiliation(s)
- Hao Qi
- 1Key Laboratory of Systems Bioengineering, Ministry of Education, Tianjin, P.R. China.,2School of Chemical Engineering and Technology, Tianjin University, Tianjin, P.R. China
| | - Guoyou Huang
- 3MOE Key Laboratory of Biomedical Information Engineering, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, P.R. China.,4Bioinspired Engineering and Biomechanics Center, Xi'an Jiaotong University, Xi'an, P.R. China
| | - Yulong Han
- 3MOE Key Laboratory of Biomedical Information Engineering, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, P.R. China.,4Bioinspired Engineering and Biomechanics Center, Xi'an Jiaotong University, Xi'an, P.R. China
| | - Xiaohui Zhang
- 3MOE Key Laboratory of Biomedical Information Engineering, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, P.R. China.,4Bioinspired Engineering and Biomechanics Center, Xi'an Jiaotong University, Xi'an, P.R. China
| | - Yuhui Li
- 3MOE Key Laboratory of Biomedical Information Engineering, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, P.R. China.,4Bioinspired Engineering and Biomechanics Center, Xi'an Jiaotong University, Xi'an, P.R. China
| | - Belinda Pingguan-Murphy
- 5Department of Biomedical Engineering, Faculty of Engineering, University of Malaya, Kuala Lumpur, Malaysia
| | - Tian Jian Lu
- 4Bioinspired Engineering and Biomechanics Center, Xi'an Jiaotong University, Xi'an, P.R. China
| | - Feng Xu
- 3MOE Key Laboratory of Biomedical Information Engineering, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, P.R. China.,4Bioinspired Engineering and Biomechanics Center, Xi'an Jiaotong University, Xi'an, P.R. China
| | - Lin Wang
- 3MOE Key Laboratory of Biomedical Information Engineering, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, P.R. China.,4Bioinspired Engineering and Biomechanics Center, Xi'an Jiaotong University, Xi'an, P.R. China
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33
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Qian Y, Tang D, Du L, Zhang Y, Zhang L, Gao F. A novel signal-on electrochemical DNA sensor based on target catalyzed hairpin assembly strategy. Biosens Bioelectron 2015; 64:177-81. [DOI: 10.1016/j.bios.2014.09.001] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2014] [Revised: 08/21/2014] [Accepted: 09/01/2014] [Indexed: 12/11/2022]
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34
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An ultrasensitive supersandwich electrochemical DNA biosensor based on gold nanoparticles decorated reduced graphene oxide. Anal Biochem 2015; 469:71-5. [DOI: 10.1016/j.ab.2014.09.023] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2014] [Revised: 09/23/2014] [Accepted: 09/30/2014] [Indexed: 12/16/2022]
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35
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Wang X, Deng W, Shen L, Yan M, Ge S, Yu J. A sensitive quenched electrochemiluminescent DNA sensor based on the catalytic activity of gold nanoparticle functionalized MoS2. NEW J CHEM 2015. [DOI: 10.1039/c5nj01451d] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A simple sandwich-type ECL sensor for DNA detection based on MoS2–Au quenching the ECL signal of CdS/ZnS QDs.
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Affiliation(s)
- Xiu Wang
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong
- School of Chemistry and Chemical Engineering
- University of Jinan
- Jinan 250022
- P. R. China
| | - Wenping Deng
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong
- School of Chemistry and Chemical Engineering
- University of Jinan
- Jinan 250022
- P. R. China
| | - Lei Shen
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong
- School of Chemistry and Chemical Engineering
- University of Jinan
- Jinan 250022
- P. R. China
| | - Mei Yan
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong
- School of Chemistry and Chemical Engineering
- University of Jinan
- Jinan 250022
- P. R. China
| | - Shenguang Ge
- Shandong Provincial Key Laboratory of Preparation and Measurement of Building Materials
- University of Jinan
- Jinan 250022
- P. R. China
| | - Jinghua Yu
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong
- School of Chemistry and Chemical Engineering
- University of Jinan
- Jinan 250022
- P. R. China
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36
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Zheng J, Hu L, Zhang M, Xu J, He P. An electrochemical sensing strategy for the detection of the hepatitis B virus sequence with homogenous hybridization based on host–guest recognition. RSC Adv 2015. [DOI: 10.1039/c5ra16204a] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Schematic for electrochemically sensing DNA with hybridization in homogeneous solutionviahost–guest recognition based on MNPs/β-CD.
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Affiliation(s)
- Jing Zheng
- Department of Chemistry & Chemical Engineering
- Shanghai University of Engineering Science
- Shanghai
- P. R. China
- Department of Chemistry
| | - Liping Hu
- Department of Chemistry & Chemical Engineering
- Shanghai University of Engineering Science
- Shanghai
- P. R. China
| | - Min Zhang
- Department of Chemistry & Chemical Engineering
- Shanghai University of Engineering Science
- Shanghai
- P. R. China
| | - Jingli Xu
- Department of Chemistry & Chemical Engineering
- Shanghai University of Engineering Science
- Shanghai
- P. R. China
| | - Pingang He
- Department of Chemistry
- East China Normal University
- Shanghai
- P. R. China
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37
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Lashkor M, Rawson FJ, Preece JA, Mendes PM. Switching specific biomolecular interactions on surfaces under complex biological conditions. Analyst 2014; 139:5400-8. [PMID: 25180245 PMCID: PMC4184031 DOI: 10.1039/c4an01225a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2014] [Accepted: 08/21/2014] [Indexed: 01/11/2023]
Abstract
Herein, electrically switchable mixed self-assembled monolayers based on oligopeptides have been developed and investigated for their suitability in achieving control over biomolecular interactions in the presence of complex biological conditions. Our model system, a biotinylated oligopeptide tethered to gold within a background of tri(ethylene glycol) undecanethiol, is ubiquitous in both switching specific protein interactions in highly fouling media while still offering the non-specific protein-resistance to the surface. Furthermore, the work demonstrated that the performance of the switching on the electro-switchable oligopeptide is sensitive to the characteristics of the media, and in particular, its protein concentration and buffer composition, and thus such aspects should be considered and addressed to assure maximum switching performance. This study lays the foundation for developing more realistic dynamic extracellular matrix models and is certainly applicable in a wide variety of biological and medical applications.
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Affiliation(s)
- Minhaj Lashkor
- School of Chemical Engineering , University of Birmingham , Edgbaston , Birmingham , B15 2TT , UK .
| | - Frankie J. Rawson
- Laboratory of Biophysics and Surface Analysis , School of Pharmacy , University of Nottingham , University Park , Nottingham , NG 72RD , UK
| | - Jon A. Preece
- School of Chemistry , University of Birmingham , Edgbaston , Birmingham , B15 2TT , UK
| | - Paula M. Mendes
- School of Chemical Engineering , University of Birmingham , Edgbaston , Birmingham , B15 2TT , UK .
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38
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Lashkor M, Rawson FJ, Stephenson-Brown A, Preece JA, Mendes PM. Electrically-driven modulation of surface-grafted RGD peptides for manipulation of cell adhesion. Chem Commun (Camb) 2014; 50:15589-92. [PMID: 25360452 PMCID: PMC4230383 DOI: 10.1039/c4cc06649a] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Reported herein is a switchable surface that relies on electrically-induced conformational changes within surface-grafted arginine–glycine–aspartate (RGD) oligopeptides as the means of modulating cell adhesion.
Reported herein is a switchable surface that relies on electrically-induced conformational changes within surface-grafted arginine–glycine–aspartate (RGD) oligopeptides as the means of modulating cell adhesion.
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Affiliation(s)
- Minhaj Lashkor
- School of Chemical Engineering, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
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39
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Wu Y, Lai RY. Effects of DNA Probe and Target Flexibility on the Performance of a “Signal-on” Electrochemical DNA Sensor. Anal Chem 2014; 86:8888-95. [DOI: 10.1021/ac5027226] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yao Wu
- 651 Hamilton Hall, University of Nebraska—Lincoln, Lincoln, Nebraska 68588-0304, United States
| | - Rebecca Y. Lai
- 651 Hamilton Hall, University of Nebraska—Lincoln, Lincoln, Nebraska 68588-0304, United States
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40
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Zhuang J, Tang D, Lai W, Chen G, Yang H. Immobilization-Free Programmable Hairpin Probe for Ultrasensitive Electronic Monitoring of Nucleic Acid Based on a Biphasic Reaction Mode. Anal Chem 2014; 86:8400-7. [DOI: 10.1021/ac501986k] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Junyang Zhuang
- Institute of Nanomedicine
and Nanobiosensing, MOE Key Laboratory of Analysis and Detection for
Food Safety, Department of Chemistry, Fuzhou University, Fuzhou 350108, P.R. China
| | - Dianping Tang
- Institute of Nanomedicine
and Nanobiosensing, MOE Key Laboratory of Analysis and Detection for
Food Safety, Department of Chemistry, Fuzhou University, Fuzhou 350108, P.R. China
| | - Wenqiang Lai
- Institute of Nanomedicine
and Nanobiosensing, MOE Key Laboratory of Analysis and Detection for
Food Safety, Department of Chemistry, Fuzhou University, Fuzhou 350108, P.R. China
| | - Guonan Chen
- Institute of Nanomedicine
and Nanobiosensing, MOE Key Laboratory of Analysis and Detection for
Food Safety, Department of Chemistry, Fuzhou University, Fuzhou 350108, P.R. China
| | - Huanghao Yang
- Institute of Nanomedicine
and Nanobiosensing, MOE Key Laboratory of Analysis and Detection for
Food Safety, Department of Chemistry, Fuzhou University, Fuzhou 350108, P.R. China
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41
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Pranzetti A, Davis M, Yeung CL, Preece JA, Koelsch P, Mendes PM. Direct Observation of Reversible Biomolecule Switching Controlled By Electrical Stimulus. ADVANCED MATERIALS INTERFACES 2014; 1:1-4. [PMID: 25810954 PMCID: PMC4368128 DOI: 10.1002/admi.201400026] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2014] [Revised: 03/14/2014] [Indexed: 06/04/2023]
Affiliation(s)
- Alice Pranzetti
- School of Chemical Engineering, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK
| | - Matthew Davis
- National ESCA and Surface Analysis Center for Biomedical Problems, Department of Bioengineering, University of Washington P.O. Box 351653, Seattle, Washington, 98195-1653, USA
| | - Chun L Yeung
- School of Chemical Engineering, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK
| | - Jon A Preece
- School of Chemistry, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK
| | - Patrick Koelsch
- National ESCA and Surface Analysis Center for Biomedical Problems, Department of Bioengineering, University of Washington P.O. Box 351653, Seattle, Washington, 98195-1653, USA
| | - Paula M Mendes
- School of Chemical Engineering, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK
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42
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Shen J, Li Y, Gu H, Xia F, Zuo X. Recent development of sandwich assay based on the nanobiotechnologies for proteins, nucleic acids, small molecules, and ions. Chem Rev 2014; 114:7631-77. [PMID: 25115973 DOI: 10.1021/cr300248x] [Citation(s) in RCA: 187] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Juwen Shen
- Key Laboratory for Large-Format Battery Materials and System, Ministry of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology (HUST) , Wuhan 430074, China
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43
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Cui HF, Cheng L, Zhang J, Liu R, Zhang C, Fan H. An electrochemical DNA sensor for sequence-specific DNA recognization in a homogeneous solution. Biosens Bioelectron 2014; 56:124-8. [DOI: 10.1016/j.bios.2013.12.027] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2013] [Revised: 12/07/2013] [Accepted: 12/09/2013] [Indexed: 01/01/2023]
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44
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Canales S, Villacampa MD, Laguna A, Gimeno MC. Coordination studies of the ferrocenyl phosphine selenide ligand FcCON(CH2CH2PPh2Se)2. J Organomet Chem 2014. [DOI: 10.1016/j.jorganchem.2013.12.017] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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45
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Yeung CL, Wang X, Lashkor M, Cantini E, Rawson FJ, Iqbal P, Preece JA, Ma J, Mendes PM. Modulation of Biointeractions by Electrically Switchable Oligopeptide Surfaces: Structural Requirements and Mechanism. ADVANCED MATERIALS INTERFACES 2014; 1:1300085. [PMID: 25793154 PMCID: PMC4358153 DOI: 10.1002/admi.201300085] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2013] [Revised: 12/01/2013] [Indexed: 06/04/2023]
Abstract
Understanding the dynamic behavior of switchable surfaces is of paramount importance for the development of controllable and tailor-made surface materials. Herein, electrically switchable mixed self-assembled monolayers based on oligopeptides have been investigated in order to elucidate their conformational mechanism and structural requirements for the regulation of biomolecular interactions between proteins and ligands appended to the end of surface tethered oligopeptides. The interaction of the neutravidin protein to a surface appended biotin ligand was chosen as a model system. All the considerable experimental data, taken together with detailed computational work, support a switching mechanism in which biomolecular interactions are controlled by conformational changes between fully extended ("ON" state) and collapsed ("OFF" state) oligopeptide conformer structures. In the fully extended conformation, the biotin appended to the oligopeptide is largely free from steric factors allowing it to efficiently bind to the neutravidin from solution. While under a collapsed conformation, the ligand presented at the surface is partially embedded in the second component of the mixed SAM, and thus sterically shielded and inaccessible for neutravidin binding. Steric hindrances aroused from the neighboring surface-confined oligopeptide chains exert a great influence over the conformational behaviour of the oligopeptides, and as a consequence, over the switching efficiency. Our results also highlight the role of oligopeptide length in controlling binding switching efficiency. This study lays the foundation for designing and constructing dynamic surface materials with novel biological functions and capabilities, enabling their utilization in a wide variety of biological and medical applications.
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Affiliation(s)
- Chun L Yeung
- School of Chemical Engineering, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK E-mail:
| | - Xingyong Wang
- School of Chemistry, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK
| | - Minhaj Lashkor
- School of Chemical Engineering, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK E-mail:
| | - Eleonora Cantini
- School of Chemical Engineering, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK E-mail:
| | - Frankie J Rawson
- Laboratory of Biophysics and Surface Analysis, School of Pharmacy, University of Nottingham University Park, Nottingham, NG7 2RD, UK
| | - Parvez Iqbal
- School of Chemical Engineering, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK E-mail: ; School of Chemistry, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK
| | - Jon A Preece
- School of Chemistry, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK
| | - Jing Ma
- School of Chemistry and Chemical Engineering, Nanjing University Nanjing, 210093, P. R. China E-mail:
| | - Paula M Mendes
- School of Chemical Engineering, University of Birmingham Edgbaston, Birmingham, B15 2TT, UK E-mail:
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46
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Wang J, Shi A, Fang X, Han X, Zhang Y. Ultrasensitive electrochemical supersandwich DNA biosensor using a glassy carbon electrode modified with gold particle-decorated sheets of graphene oxide. Mikrochim Acta 2014. [DOI: 10.1007/s00604-014-1182-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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47
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Yu ZG, Zaitouna AJ, Lai RY. Effect of redox label tether length and flexibility on sensor performance of displacement-based electrochemical DNA sensors. Anal Chim Acta 2014; 812:176-83. [DOI: 10.1016/j.aca.2013.12.040] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2013] [Revised: 12/19/2013] [Accepted: 12/28/2013] [Indexed: 10/25/2022]
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48
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Grabowska I, Singleton DG, Stachyra A, Góra-Sochacka A, Sirko A, Zagórski-Ostoja W, Radecka H, Stulz E, Radecki J. A highly sensitive electrochemical genosensor based on Co-porphyrin-labelled DNA. Chem Commun (Camb) 2014; 50:4196-9. [DOI: 10.1039/c4cc00172a] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cobalt-porphyrin-modified DNA was used to design an electrochemical genosensor which is able to detect a minimum of 1000 DNA molecules.
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Affiliation(s)
- Iwona Grabowska
- Institute of Animal Reproduction and Food Research
- Polish Academy of Sciences
- 10-747 Olsztyn, Poland
| | - Daniel G. Singleton
- School of Chemistry and Institute for Life Sciences
- University of Southampton
- Southampton SO17 1BJ, UK
| | - Anna Stachyra
- Institute of Biochemistry and Biophysics
- Polish Academy of Sciences
- 02-106 Warsaw, Poland
| | - Anna Góra-Sochacka
- Institute of Biochemistry and Biophysics
- Polish Academy of Sciences
- 02-106 Warsaw, Poland
| | - Agnieszka Sirko
- Institute of Biochemistry and Biophysics
- Polish Academy of Sciences
- 02-106 Warsaw, Poland
| | | | - Hanna Radecka
- Institute of Animal Reproduction and Food Research
- Polish Academy of Sciences
- 10-747 Olsztyn, Poland
| | - Eugen Stulz
- School of Chemistry and Institute for Life Sciences
- University of Southampton
- Southampton SO17 1BJ, UK
| | - Jerzy Radecki
- Institute of Animal Reproduction and Food Research
- Polish Academy of Sciences
- 10-747 Olsztyn, Poland
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49
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50
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Grabowska I, Malecka K, Stachyra A, Góra-Sochacka A, Sirko A, Zagórski-Ostoja W, Radecka H, Radecki J. Single Electrode Genosensor for Simultaneous Determination of Sequences Encoding Hemagglutinin and Neuraminidase of Avian Influenza Virus Type H5N1. Anal Chem 2013; 85:10167-73. [DOI: 10.1021/ac401547h] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Iwona Grabowska
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, Olsztyn, Warmian-Masurian, 10-747 Poland
| | - Kamila Malecka
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, Olsztyn, Warmian-Masurian, 10-747 Poland
| | - Anna Stachyra
- Institute
of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego
5A, Warsaw, Masovian, 02-106 Poland
| | - Anna Góra-Sochacka
- Institute
of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego
5A, Warsaw, Masovian, 02-106 Poland
| | - Agnieszka Sirko
- Institute
of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego
5A, Warsaw, Masovian, 02-106 Poland
| | - Włodzimierz Zagórski-Ostoja
- Institute
of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego
5A, Warsaw, Masovian, 02-106 Poland
| | - Hanna Radecka
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, Olsztyn, Warmian-Masurian, 10-747 Poland
| | - Jerzy Radecki
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, Olsztyn, Warmian-Masurian, 10-747 Poland
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