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Tran VA, Teucher M, Galazzo L, Sharma B, Pongratz T, Kast SM, Marx D, Bordignon E, Schnegg A, Neese F. Dissecting the Molecular Origin of g-Tensor Heterogeneity and Strain in Nitroxide Radicals in Water: Electron Paramagnetic Resonance Experiment versus Theory. J Phys Chem A 2023; 127:6447-6466. [PMID: 37524058 PMCID: PMC10424240 DOI: 10.1021/acs.jpca.3c02879] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 07/01/2023] [Indexed: 08/02/2023]
Abstract
Nitroxides are common EPR sensors of microenvironmental properties such as polarity, numbers of H-bonds, pH, and so forth. Their solvation in an aqueous environment is facilitated by their high propensity to form H-bonds with the surrounding water molecules. Their g- and A-tensor elements are key parameters to extracting the properties of their microenvironment. In particular, the gxx value of nitroxides is rich in information. It is known to be characterized by discrete values representing nitroxide populations previously assigned to have different H-bonds with the surrounding waters. Additionally, there is a large g-strain, that is, a broadening of g-values associated with it, which is generally correlated with environmental and structural micro-heterogeneities. The g-strain is responsible for the frequency dependence of the apparent line width of the EPR spectra, which becomes evident at high field/frequency. Here, we address the molecular origin of the gxx heterogeneity and of the g-strain of a nitroxide moiety (HMI: 2,2,3,4,5,5-hexamethylimidazolidin-1-oxyl, C9H19N2O) in water. To treat the solvation effect on the g-strain, we combined a multi-frequency experimental approach with ab initio molecular dynamics simulations for structural sampling and quantum chemical EPR property calculations at the highest realistically affordable level, including an explicitly micro-solvated HMI ensemble and the embedded cluster reference interaction site model. We could clearly identify the distinct populations of the H-bonded nitroxides responsible for the gxx heterogeneity experimentally observed, and we dissected the role of the solvation shell, H-bond formation, and structural deformation of the nitroxide in the creation of the g-strain associated with each nitroxide subensemble. Two contributions to the g-strain were identified in this study. The first contribution depends on the number of hydrogen bonds formed between the nitroxide and the solvent because this has a large and well-understood effect on the gxx-shift. This contribution can only be resolved at high resonance frequencies, where it leads to distinct peaks in the gxx region. The second contribution arises from configurational fluctuations of the nitroxide that necessarily lead to g-shift heterogeneity. These contributions cannot be resolved experimentally as distinct resonances but add to the line broadening. They can be quantitatively analyzed by studying the apparent line width as a function of microwave frequency. Interestingly, both theory and experiment confirm that this contribution is independent of the number of H-bonds. Perhaps even more surprisingly, the theoretical analysis suggests that the configurational fluctuation broadening is not induced by the solvent but is inherently present even in the gas phase. Moreover, the calculations predict that this broadening decreases upon solvation of the nitroxide.
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Affiliation(s)
- Van Anh Tran
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Markus Teucher
- Max-Planck-Institut
für Chemische Energiekonversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Laura Galazzo
- Department
of Physical Chemistry, University of Geneva, Quai Ernest Ansermet 30, 1211 Geneva, Switzerland
- Faculty
of Chemistry and Biochemistry, Ruhr-Universität
Bochum, 44780 Bochum, Germany
| | - Bikramjit Sharma
- Lehrstuhl
für Theoretische Chemie, Ruhr-Universität
Bochum, 44780 Bochum, Germany
| | - Tim Pongratz
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Str. 4a, 44227 Dortmund, Germany
| | - Stefan M. Kast
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Str. 4a, 44227 Dortmund, Germany
| | - Dominik Marx
- Lehrstuhl
für Theoretische Chemie, Ruhr-Universität
Bochum, 44780 Bochum, Germany
| | - Enrica Bordignon
- Department
of Physical Chemistry, University of Geneva, Quai Ernest Ansermet 30, 1211 Geneva, Switzerland
- Faculty
of Chemistry and Biochemistry, Ruhr-Universität
Bochum, 44780 Bochum, Germany
| | - Alexander Schnegg
- Max-Planck-Institut
für Chemische Energiekonversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Frank Neese
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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Coppola F, Cimino P, Perrella F, Crisci L, Petrone A, Rega N. Electronic and Vibrational Manifold of Tetracyanoethylene-Chloronaphthalene Charge Transfer Complex in Solution: Insights from TD-DFT and Ab Initio Molecular Dynamics. J Phys Chem A 2022; 126:7179-7192. [PMID: 36174118 PMCID: PMC9574931 DOI: 10.1021/acs.jpca.2c05001] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 09/17/2022] [Indexed: 11/29/2022]
Abstract
The interplay between light absorption and the molecular environment has a central role in the observed photophysics of a wide range of photoinduced chemical and biological phenomena. The understanding of the interplay between vibrational and electronic transitions is the focus of this work, since it can provide a rationale to tune the optical properties of charge transfer (CT) materials used for technological applications. A clear description of these processes poses a nontrivial challenge from both the theoretical and experimental points of view, where the main issue is how to accurately describe and probe drastic changes in the electronic structure and the ultrafast molecular relaxation and dynamics. In this work we focused on the intermolecular CT reaction that occurs upon photon absorption in a π-stacked model system in dichloromethane solution, in which the 1-chloronaphthalene (1ClN) acts as the electron donor and tetracyanoethylene (TCNE) is the electron acceptor. Density functional theory calculations have been carried out to characterize both the ground-state properties and more importantly the low-lying CT electronic transition, and excellent agreement with recently available experimental results [Mathies, R. A.; et al. J. Phys. Chem. A 2018, 122 (14), 3594] was obtained. The minima of the ground state and first singlet excited state have been accurately characterized in terms of spatial arrangements and vibrational Raman frequencies, and the CT natures of the first two low-lying electronic transitions in the absorption spectra have been addressed and clarified too. Finally, by modeling the possible coordination sites of the TCNE electron acceptor with respect to monovalent ions (Na+, K+) in an implicit solution of acetonitrile, we find that TCNE can accommodate a counterion in two different arrangements, parallel and orthogonal to the C═C axis, leading to the formation of a contact ion pair. The nature of the counterion and its relative position entail structural modifications of the TCNE radical anion, mainly the central C═C and C≡N bonds, compared to the isolated case. An important red shift of the C═C stretching frequency was observed when the counterion is orthogonal to the double bond, to a greater extent for Na+. On the contrary, in the second case, where the counterion ion lies along the internuclear C═C axis, we find that K+ polarizes the electron density of the double bond more, resulting in a greater red shift than with Na+.
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Affiliation(s)
- Federico Coppola
- Department
of Chemical Sciences, University of Napoli
Federico II, Complesso Universitario di M.S. Angelo, 80126 Napoli, Italy
- Scuola
Superiore Meridionale, Largo San Marcellino 10, 80138 Napoli, Italy
| | - Paola Cimino
- Department
of Pharmaceutical Sciences, University of
Salerno, 84084 Fisciano, Italy
| | - Fulvio Perrella
- Department
of Chemical Sciences, University of Napoli
Federico II, Complesso Universitario di M.S. Angelo, 80126 Napoli, Italy
- Scuola
Superiore Meridionale, Largo San Marcellino 10, 80138 Napoli, Italy
| | - Luigi Crisci
- Department
of Chemical Sciences, University of Napoli
Federico II, Complesso Universitario di M.S. Angelo, 80126 Napoli, Italy
| | - Alessio Petrone
- Department
of Chemical Sciences, University of Napoli
Federico II, Complesso Universitario di M.S. Angelo, 80126 Napoli, Italy
- Scuola
Superiore Meridionale, Largo San Marcellino 10, 80138 Napoli, Italy
- Istituto
Nazionale di Fisica Nucleare, Sezione di Napoli, Complesso Universitario di Monte S. Angelo ed. 6, 80126 Napoli, Italy
| | - Nadia Rega
- Department
of Chemical Sciences, University of Napoli
Federico II, Complesso Universitario di M.S. Angelo, 80126 Napoli, Italy
- Scuola
Superiore Meridionale, Largo San Marcellino 10, 80138 Napoli, Italy
- Istituto
Nazionale di Fisica Nucleare, Sezione di Napoli, Complesso Universitario di Monte S. Angelo ed. 6, 80126 Napoli, Italy
- Centro
Interdipartimentale di Ricerca sui Biomateriali (CRIB), Piazzale Tecchio, 80125 Napoli, Italy
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Sharma B, Tran VA, Pongratz T, Galazzo L, Zhurko I, Bordignon E, Kast SM, Neese F, Marx D. A Joint Venture of Ab Initio Molecular Dynamics, Coupled Cluster Electronic Structure Methods, and Liquid-State Theory to Compute Accurate Isotropic Hyperfine Constants of Nitroxide Probes in Water. J Chem Theory Comput 2021; 17:6366-6386. [PMID: 34516119 PMCID: PMC8515807 DOI: 10.1021/acs.jctc.1c00582] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Indexed: 01/11/2023]
Abstract
The isotropic hyperfine coupling constant (HFCC, Aiso) of a pH-sensitive spin probe in a solution, HMI (2,2,3,4,5,5-hexamethylimidazolidin-1-oxyl, C9H19N2O) in water, is computed using an ensemble of state-of-the-art computational techniques and is gauged against X-band continuous wave electron paramagnetic resonance (EPR) measurement spectra at room temperature. Fundamentally, the investigation aims to delineate the cutting edge of current first-principles-based calculations of EPR parameters in aqueous solutions based on using rigorous statistical mechanics combined with correlated electronic structure techniques. In particular, the impact of solvation is described by exploiting fully atomistic, RISM integral equation, and implicit solvation approaches as offered by ab initio molecular dynamics (AIMD) of the periodic bulk solution (using the spin-polarized revPBE0-D3 hybrid functional), embedded cluster reference interaction site model integral equation theory (EC-RISM), and polarizable continuum embedding (using CPCM) of microsolvated complexes, respectively. HFCCs are obtained from efficient coupled cluster calculations (using open-shell DLPNO-CCSD theory) as well as from hybrid density functional theory (using revPBE0-D3). Re-solvation of "vertically desolvated" spin probe configuration snapshots by EC-RISM embedding is shown to provide significantly improved results compared to CPCM since only the former captures the inherent structural heterogeneity of the solvent close to the spin probe. The average values of the Aiso parameter obtained based on configurational statistics using explicit water within AIMD and from EC-RISM solvation are found to be satisfactorily close. Using either such explicit or RISM solvation in conjunction with DLPNO-CCSD calculations of the HFCCs provides an average Aiso parameter for HMI in aqueous solution at 300 K and 1 bar that is in good agreement with the experimentally determined one. The developed computational strategy is general in the sense that it can be readily applied to other spin probes of similar molecular complexity, to aqueous solutions beyond ambient conditions, as well as to other solvents in the longer run.
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Affiliation(s)
- Bikramjit Sharma
- Lehrstuhl
für Theoretische Chemie, Ruhr-Universität
Bochum, 44780 Bochum, Germany
| | - Van Anh Tran
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Tim Pongratz
- Physikalische
Chemie III, Technische Universität
Dortmund, Otto-Hahn-Str. 4a, 44227 Dortmund, Germany
| | - Laura Galazzo
- Faculty
of Chemistry and Biochemistry, Ruhr University
Bochum, 44780 Bochum, Germany
| | - Irina Zhurko
- Laboratory
of Nitrogen Compounds, N.N. Vorozhtsov Novosibirsk Institute of Organic
Chemistry, NIOCH SB RAS, 9 Lavrentiev Avenue, 630090, Novosibirsk, Russia
| | - Enrica Bordignon
- Faculty
of Chemistry and Biochemistry, Ruhr University
Bochum, 44780 Bochum, Germany
| | - Stefan M. Kast
- Physikalische
Chemie III, Technische Universität
Dortmund, Otto-Hahn-Str. 4a, 44227 Dortmund, Germany
| | - Frank Neese
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Dominik Marx
- Lehrstuhl
für Theoretische Chemie, Ruhr-Universität
Bochum, 44780 Bochum, Germany
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Giovannini T, Lafiosca P, Chandramouli B, Barone V, Cappelli C. Effective yet reliable computation of hyperfine coupling constants in solution by a QM/MM approach: Interplay between electrostatics and non-electrostatic effects. J Chem Phys 2019; 150:124102. [DOI: 10.1063/1.5080810] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | - Piero Lafiosca
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Balasubramanian Chandramouli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
- Compunet, Istituto Italiano di Tecnologia (IIT), Via Morego 30, 16163 Genova, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Chiara Cappelli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
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Janbazi M, T. Azar Y, Ziaie F. EPR parameters of L-α-alanine radicals in aqueous solution: a first-principles study. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1456684] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Mehdi Janbazi
- Radiation Application Research School, Nuclear Science and Technology Research Institute, Tehran, Iran
| | - Yavar T. Azar
- Physics and Accelerator Research School, Nuclear Science and Technology Research Institute, Tehran, Iran
| | - Farhood Ziaie
- Radiation Application Research School, Nuclear Science and Technology Research Institute, Tehran, Iran
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6
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Huang C, Muñoz-García AB, Pavone M. Effective scheme for partitioning covalent bonds in density-functional embedding theory: From molecules to extended covalent systems. J Chem Phys 2016; 145:244103. [DOI: 10.1063/1.4972012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Barone V, Cimino P, Stendardo E. Development and Validation of the B3LYP/N07D Computational Model for Structural Parameter and Magnetic Tensors of Large Free Radicals. J Chem Theory Comput 2015; 4:751-64. [PMID: 26621090 DOI: 10.1021/ct800034c] [Citation(s) in RCA: 187] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Extensive calculations on a large set of free radicals containing atoms of the second and third row show that the B3LYP/N07D computational model provides remarkably accurate structural parameters and magnetic tensors at reasonable computational costs. The key of this success is the optimization of core-valence s functions for hyperfine coupling constants, while retaining (and even improving) the good performances of the parent 6-31+G(d,p) basis set for valence properties through reoptimization of polarization and diffuse p functions.
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Affiliation(s)
- Vincenzo Barone
- LSDM and INSTM-Village, Dipartimento di Chimica 'Paolo Corradini', Complesso Universitario Monte S. Angelo, via Cintia, I-80126 Napoli, Italy
| | - Paola Cimino
- LSDM and INSTM-Village, Dipartimento di Chimica 'Paolo Corradini', Complesso Universitario Monte S. Angelo, via Cintia, I-80126 Napoli, Italy
| | - Emiliano Stendardo
- LSDM and INSTM-Village, Dipartimento di Chimica 'Paolo Corradini', Complesso Universitario Monte S. Angelo, via Cintia, I-80126 Napoli, Italy
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8
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Witwicki M, Jezierska J. Toward an Understanding of the Ambiguous Electron Paramagnetic Resonance Spectra of the Iminoxy Radical from o-Fluorobenzaldehyde Oxime: Density Functional Theory and ab Initio Studies. J Phys Chem A 2015; 119:9109-20. [PMID: 26258434 DOI: 10.1021/acs.jpca.5b06143] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Iminoxy radicals (R1R2C═N—O•) possess an inherent ability to exist as E and Z isomers. Although isotropic hyperfine couplings for the species with R1 = H allow one to distinguish between E and Z, unequivocal assignment of the parameters observed in the EPR spectra of the radicals without the hydrogen atom at the azomethine carbon to the right isomer is not a simple task. The iminoxyl derived from o-fluoroacetophenone oxime (R1 = CH3 and R2 = o-FC6H5) appears to be a case in point. Moreover, for its two isomers the rotation of the o-FC6H5 group brings into existence the syn and anti conformers, depending on the mutual orientation of the F atom and C═N—O• group, making a description of hyperfine couplings to structure even more challenging. To accomplish this, a vast array of theoretical methods (DFT, OO-SCS-MP2, QCISD) was used to calculate the isotropic hyperfine couplings. The comparison between experimental and theoretical values revealed that the E isomer is the dominant radical form, for which a fast interconversion between anti and syn conformers is expected. In addition, the origin of the significant AF increase with solvent polarity was analyzed.
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Fumanal M, Capdevila-Cortada M, Ribas-Arino J, Novoa JJ. Electronic excitation energies in dimers between radical ions presenting long, multicenter bonding. J Chem Theory Comput 2015; 11:2651-60. [PMID: 26575562 DOI: 10.1021/acs.jctc.5b00381] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The formation of long, multicenter dimers between radical ions is usually monitored through UV-vis spectroscopy given the characteristic low-energy absorption band that they exhibit, not observed for the parent monomers. In this work, the performance of CASPT2, RASPT2, and TD-DFT methods for obtaining excitation energies of the long, multicenter bonded π-[TCNE]2(2-) and π-[TTF]2(2+) dimers has been addressed (TCNE = tetracyanoethylene; TTF = tetrathiafulvalene). The impact of the active space on the vertical electronic transitions computed at the RASPT2 and CASPT2 levels has been tested against experimentally observed absorption bands. Analogous tests have been carried out for a wide variety of density functionals within the TD-DFT formalism. Our calculations show that whereas CASPT2 predicts very accurate excitation energies for the π-[TCNE]2(2-), the mean absolute error for π-[TTF]2(2+) is higher for CASPT2 than for TD-DFT calculations, whenever pure density functionals or low % HF exchange hybrid functionals are used. Hybrid functionals with high % HF exchange (and thus RSH functionals) conduct to large errors on the excitation energies in both dimers. Furthermore, vertical electronic transitions are also obtained for 100 configurations extracted from a 45 ps molecular dynamics (CPMD) simulation aimed at providing an accurate description of the thermal fluctuation effects of a π-[TCNE]2(2-) dimer in dichloromethane. These thermal effects explain the shape of the experimental UV-vis spectrum, where the lowest HOMO → LUMO absorption presents a broad band and the following HOMO-1 → LUMO absorption exhibits a narrower band.
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Affiliation(s)
- Maria Fumanal
- Departament de Química Física and IQTCUB, Facultat de Química, Universitat de Barcelona , Avenida Diagonal 645, 08028 Barcelona, Spain
| | - Marçal Capdevila-Cortada
- Departament de Química Física and IQTCUB, Facultat de Química, Universitat de Barcelona , Avenida Diagonal 645, 08028 Barcelona, Spain
| | - Jordi Ribas-Arino
- Departament de Química Física and IQTCUB, Facultat de Química, Universitat de Barcelona , Avenida Diagonal 645, 08028 Barcelona, Spain
| | - Juan J Novoa
- Departament de Química Física and IQTCUB, Facultat de Química, Universitat de Barcelona , Avenida Diagonal 645, 08028 Barcelona, Spain
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10
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Witwicki M. Theoretical Characterisation of Phosphinyl Radicals and Their Magnetic Properties: g Matrix. Chemphyschem 2015; 16:1912-25. [PMID: 25873130 DOI: 10.1002/cphc.201500121] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2015] [Indexed: 11/11/2022]
Abstract
The g matrices (g tensors) of various phosphinyl radicals (R2 P(.) ) were calculated using the DFT and multireference configuration interaction (MRCI) methods. The g matrices were distinctly dependent on the molecular structure of the radical. To thoroughly examine this dependence, the contributions from individual atoms and excited states were calculated. The former revealed the gain from the phosphorus atom to be preeminent unless PO or PS bonds are present in the radical molecule. The contributions owing to excited states arising from electronic transitions between doubly occupied molecular orbitals and the SOMO were clearly positive, as in the case of semiquinone and niroxide radicals. The transitions from the phosphorus lone pair were of paramount importance. Surprisingly, unlike for semiquinones and nitroxides, a significant negative contribution was observed from excitations from the SOMO to unoccupied molecular orbitals. For radicals with PO bonds, this contribution to the g2 component was dominant.
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Affiliation(s)
- Maciej Witwicki
- Faculty of Chemistry, Wroclaw University, 14 F. Joliot-Curie St., Wroclaw 50-283 (Poland).
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11
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Vela S, Deumal M, Shiga M, Novoa JJ, Ribas-Arino J. Dynamical effects on the magnetic properties of dithiazolyl bistable materials. Chem Sci 2015; 6:2371-2381. [PMID: 29308151 PMCID: PMC5645919 DOI: 10.1039/c4sc03930k] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2014] [Accepted: 01/22/2015] [Indexed: 12/13/2022] Open
Abstract
The magnetic properties of molecule-based magnets are commonly rationalized by considering only a single nuclear configuration of the system under study (usually an X-ray crystal structure). Here, by means of a computational study, we compare the results obtained using such a static approach with those obtained by explicitly accounting for thermal fluctuations, and uncover the serious limitations of the static perspective when dealing with magnetic crystals whose radicals undergo wide-amplitude motions. As a proof of concept, these limitations are illustrated for the magnetically bistable 1,3,5-trithia-2,4,6-triazapentalenyl (TTTA) material. For its high-temperature phase at 300 K, we show that nuclear dynamics induce large fluctuations in the magnetic exchange interactions (JAB) between spins (up to 1000% of the average value). These deviations result in a ∼20% difference between the 300 K magnetic susceptibility computed by explicitly considering the nuclear dynamics and that computed using the X-ray structure, the former being in better agreement with the experimental data. The unveiled strong coupling between JAB interactions and intermolecular vibrations reveals that considering JAB as a constant value at a given temperature (as always done in molecular magnetism) leads to a flawed description of the magnetism of TTTA. Instead, the physically relevant concept in this case is the statistical distribution of JAB values. The discovery that a single X-ray structure is not adequate enough to interpret the magnetic properties of TTTA is also expected to be decisive in other organic magnets with dominant exchange interactions propagating through labile π-π networks.
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Affiliation(s)
- Sergi Vela
- Departament de Química Física and IQTCUB , Facultat de Química , Universitat de Barcelona , Av. Diagonal 645 , 08028-Barcelona , Spain . ;
| | - Mercè Deumal
- Departament de Química Física and IQTCUB , Facultat de Química , Universitat de Barcelona , Av. Diagonal 645 , 08028-Barcelona , Spain . ;
| | - Motoyuki Shiga
- Center for Computational Science and E-Systems , Japan Atomic Energy Agency , 148-4, Kashiwanoha Campus, 178-4 Wakashiba, Kashiwa , Chiba , 277-0871 , Japan
| | - Juan J Novoa
- Departament de Química Física and IQTCUB , Facultat de Química , Universitat de Barcelona , Av. Diagonal 645 , 08028-Barcelona , Spain . ;
| | - Jordi Ribas-Arino
- Departament de Química Física and IQTCUB , Facultat de Química , Universitat de Barcelona , Av. Diagonal 645 , 08028-Barcelona , Spain . ;
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12
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A computational approach to the electronic, optical and acid–base properties of Ru(II) dyes for photoelectrochemical solar cells applications. Polyhedron 2014. [DOI: 10.1016/j.poly.2014.05.010] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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13
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Elgabarty H, Wolff M, Glaubitz A, Hinderberger D, Sebastiani D. First principles calculation of inhomogeneous broadening in solid-state cw-EPR spectroscopy. Phys Chem Chem Phys 2013; 15:16082-9. [PMID: 23985880 DOI: 10.1039/c3cp51938d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
We present a scheme for the first-principles calculation of EPR lineshapes for continuous-wave-EPR spectroscopy (cw-EPR) of spin centers in complex chemical environments. We specifically focus on poorly characterized systems, e.g. powders and frozen glasses with variable microsolvation structures. Our approach is based on ab initio molecular dynamics simulations and ab initio calculations of the ensemble of g- and A-tensors along the trajectory. The method incorporates temperature effects as well as the full anharmonicity of the intra- and intermolecular degrees of freedom of the system. We apply this scheme to compute the lineshape of a prototypical spin probe, the nitrosodisulfonate dianionic radical (Fremy's salt), dissolved in a 50 : 50 mixture of water and methanol. We are able to determine the specific effect of variations of local solvent composition and microsolvation structure on the cw-EPR lineshape. Our molecular dynamics reveal a highly anisotropic solvation structure with distinct spatial preferences for water and methanol around Fremy's salt that can be traced back to a combination of steric and polar influences. The overall solvation structure and conformational preferences of Fremy's salt as found in our MD simulations agree very well with the results obtained from EPR and orientation-selective ENDOR spectroscopy performed on the frozen glass. The simulated EPR lineshapes show good agreement with the experimental spectra. When combined with our MD results, they characterize the lineshape dependence on local morphological fluctuations.
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Affiliation(s)
- Hossam Elgabarty
- Dahlem Center for Complex Quantum Systems (DCCQS), Physics Department, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
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Hermosilla L, Prampolini G, Calle P, García de la Vega JM, Brancato G, Barone V. Extension of the AMBER Force Field for Nitroxide Radicals and Combined QM/MM/PCM Approach to the Accurate Determination of EPR Parameters of DMPO-H in Solution. J Chem Theory Comput 2013; 9:3626-36. [PMID: 26584116 PMCID: PMC4660035 DOI: 10.1021/ct4003256] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A computational strategy that combines both time-dependent and time-independent approaches is exploited to accurately model molecular dynamics and solvent effects on the isotropic hyperfine coupling constants of the DMPO-H nitroxide. Our recent general force field for nitroxides derived from AMBER ff99SB is further extended to systems involving hydrogen atoms in β-positions with respect to NO-moiety. The resulting force-field has been employed in a series of classical molecular dynamics simulations, comparing the computed EPR parameters from selected molecular configurations to the corresponding experimental data in different solvents. The effect of vibrational averaging on the spectroscopic parameters is also taken into account, by second-order vibrational perturbation theory involving semidiagonal third energy derivatives together first and second property derivatives.
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Affiliation(s)
- Laura Hermosilla
- Departamento de Química Física Aplicada, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid (Spain)
| | - Giacomo Prampolini
- Istituto per i Processi Chimico-Fisici, Consiglio Nazionale delle Ricerche, Area della Ricerca, via Moruzzi 1, I-56124, Pisa (Italy)
| | - Paloma Calle
- Departamento de Química Física Aplicada, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid (Spain)
| | | | - Giuseppe Brancato
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126, Pisa (Italy)
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126, Pisa (Italy)
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Li X, Rinkevicius Z, Kongsted J, Murugan NA, Ågren H. Binding Mechanism and Magnetic Properties of a Multifunctional Spin Label for Targeted EPR Imaging of Amyloid Proteins: Insight from Atomistic Simulations and First-Principles Calculations. J Chem Theory Comput 2012; 8:4766-74. [DOI: 10.1021/ct300606q] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Xin Li
- Department of Theoretical Chemistry
and Biology, School of Biotechnology, KTH Royal Institute of Technology, SE-10691 Stockholm, Sweden
| | - Zilvinas Rinkevicius
- Department of Theoretical Chemistry
and Biology, School of Biotechnology, KTH Royal Institute of Technology, SE-10691 Stockholm, Sweden
- Swedish e-Science Research Center
(SeRC), KTH Royal Institute of Technology, SE-10044 Stockholm, Sweden
| | - Jacob Kongsted
- Department of Physics, Chemistry
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - N. Arul Murugan
- Department of Theoretical Chemistry
and Biology, School of Biotechnology, KTH Royal Institute of Technology, SE-10691 Stockholm, Sweden
| | - Hans Ågren
- Department of Theoretical Chemistry
and Biology, School of Biotechnology, KTH Royal Institute of Technology, SE-10691 Stockholm, Sweden
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16
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Zamora PL, Villamena FA. Theoretical and experimental studies of the spin trapping of inorganic radicals by 5,5-dimethyl-1-pyrroline N-oxide (DMPO). 3. Sulfur dioxide, sulfite, and sulfate radical anions. J Phys Chem A 2012; 116:7210-8. [PMID: 22668066 PMCID: PMC3428032 DOI: 10.1021/jp3039169] [Citation(s) in RCA: 87] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Radical forms of sulfur dioxide (SO(2)), sulfite (SO(3)(2-)), sulfate (SO(4)(2-)), and their conjugate acids are known to be generated in vivo through various chemical and biochemical pathways. Oxides of sulfur are environmentally pervasive compounds and are associated with a number of health problems. There is growing evidence that their toxicity may be mediated by their radical forms. Electron paramagnetic resonance (EPR) spin trapping using the commonly used spin trap, 5,5-dimethyl-1-pyrroline N-oxide (DMPO), has been employed in the detection of SO(3)(•-) and SO(4)(•-). The thermochemistries of SO(2)(•-), SO(3)(•-), SO(4)(•-), and their respective conjugate acids addition to DMPO were predicted using density functional theory (DFT) at the PCM/B3LYP/6-31+G**//B3LYP/6-31G* level. No spin adduct was observed for SO(2)(•-) by EPR, but an S-centered adduct was observed for SO(3)(•-)and an O-centered adduct for SO(4)(•-). Determination of adducts as S- or O-centered was made via comparison based on qualitative trends of experimental hfcc's with theoretical values. The thermodynamics of the nonradical addition of SO(3)(2-) and HSO(3)(-) to DMPO followed by conversion to the corresponding radical adduct via the Forrester-Hepburn mechanism was also calculated. Adduct acidities and decomposition pathways were investigated as well, including an EPR experiment using H(2)(17)O to determine the site of hydrolysis of O-centered adducts. The mode of radical addition to DMPO is predicted to be governed by several factors, including spin population density, and geometries stabilized by hydrogen bonds. The thermodynamic data supports evidence for the radical addition pathway over the nucleophilic addition mechanism.
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Affiliation(s)
- Pedro L. Zamora
- Department of Pharmacology, The Davis Heart and Lung Research Institute and Center for Biomedical EPR Spectroscopy and Imaging, College of Medicine, The Ohio State University, Columbus, Ohio, USA 43210
| | - Frederick A. Villamena
- Department of Pharmacology, The Davis Heart and Lung Research Institute and Center for Biomedical EPR Spectroscopy and Imaging, College of Medicine, The Ohio State University, Columbus, Ohio, USA 43210
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Houriez C, Ferré N, Siri D, Tordo P, Masella M. Assessing the accuracy of a QM/MM//MD combined protocol to compute spectromagnetic properties of polyfunctional nitroxides in solution. Theor Chem Acc 2012. [DOI: 10.1007/s00214-012-1240-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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18
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Barone V, Baiardi A, Biczysko M, Bloino J, Cappelli C, Lipparini F. Implementation and validation of a multi-purpose virtual spectrometer for large systems in complex environments. Phys Chem Chem Phys 2012; 14:12404-22. [DOI: 10.1039/c2cp41006k] [Citation(s) in RCA: 122] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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19
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Rinkevicius Z, Frecuş B, Murugan NA, Vahtras O, Kongsted J, Ågren H. Encapsulation Influence on EPR Parameters of Spin-Labels: 2,2,6,6-Tetramethyl-4-methoxypiperidine-1-oxyl in Cucurbit[8]uril. J Chem Theory Comput 2011; 8:257-63. [DOI: 10.1021/ct200816z] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Zilvinas Rinkevicius
- Department of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
- Swedish e-Science Research Center (SeRC), Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - Bogdan Frecuş
- Department of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - N. Arul Murugan
- Department of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Olav Vahtras
- Department of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Jacob Kongsted
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Hans Ågren
- Department of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
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20
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A computational approach to the electronic and optical properties of Ru(II) and Ir(III) polypyridyl complexes: Applications to DSC, OLED and NLO. Coord Chem Rev 2011. [DOI: 10.1016/j.ccr.2011.03.008] [Citation(s) in RCA: 151] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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21
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Rinkevicius Z, Murugan NA, Kongsted J, Frecuş B, Steindal AH, Ågren H. Density Functional Restricted–Unrestricted/Molecular Mechanics Theory for Hyperfine Coupling Constants of Molecules in Solution. J Chem Theory Comput 2011; 7:3261-71. [DOI: 10.1021/ct2003572] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Zilvinas Rinkevicius
- Department of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
- Swedish e-Science Research Center (SeRC), Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - N. Arul Murugan
- Department of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Jacob Kongsted
- Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Bogdan Frecuş
- Department of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Arnfinn Hykkerud Steindal
- Centre of Theoretical and Computational Chemistry, Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway
| | - Hans Ågren
- Department of Theoretical Chemistry & Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
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22
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Dumont É, Ferré N. Geometrical Embedding Governs a Dramatic Variation of Electron Paramagnetic Resonance Hyperfine Coupling Constants of Disulfide Radical Anions. J Phys Chem B 2011; 115:6776-83. [DOI: 10.1021/jp2021566] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Élise Dumont
- Institut de Chimie de Lyon, Université de Lyon, UMR 5182 CNRS LCh École Normale Supérieure de Lyon, 46, allée d’Italie, 69364 Lyon Cedex 07, France
| | - Nicolas Ferré
- Universite de Provence, UMR 6264 Laboratoire Chimie Provence, Équipe Chimie Théorique, Faculté des Sciences de Saint-Jérôme Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France
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23
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Rinkevicius Z, Murugan NA, Kongsted J, Aidas K, Steindal AH, Ågren H. Density Functional Theory/Molecular Mechanics Approach for Electronic g-Tensors of Solvated Molecules. J Phys Chem B 2011; 115:4350-8. [DOI: 10.1021/jp1108653] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Zilvinas Rinkevicius
- Department of Theoretical Chemistry and Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
- Swedish e-Science Research Center (SeRC), Royal Institute of Technology, 10044 Stockholm, Sweden
| | - N. Arul Murugan
- Department of Theoretical Chemistry and Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Jacob Kongsted
- Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Kęstutis Aidas
- Department of Theoretical Chemistry and Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Arnfinn Hykkerud Steindal
- Centre of Theoretical and Computational Chemistry, Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway
| | - Hans Ågren
- Department of Theoretical Chemistry and Biology, School of Biotechnology, Royal Institute of Technology, SE-106 91 Stockholm, Sweden
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24
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Přecechtělová J, Novák P, Munzarová ML, Kaupp M, Sklenář V. Phosphorus Chemical Shifts in a Nucleic Acid Backbone from Combined Molecular Dynamics and Density Functional Calculations. J Am Chem Soc 2010; 132:17139-48. [DOI: 10.1021/ja104564g] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Jana Přecechtělová
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotlářská 2, CZ-61137 Brno, Czech Republic, and Institut für Chemie, Technische Universität Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany
| | - Petr Novák
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotlářská 2, CZ-61137 Brno, Czech Republic, and Institut für Chemie, Technische Universität Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany
| | - Markéta L. Munzarová
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotlářská 2, CZ-61137 Brno, Czech Republic, and Institut für Chemie, Technische Universität Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany
| | - Martin Kaupp
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotlářská 2, CZ-61137 Brno, Czech Republic, and Institut für Chemie, Technische Universität Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany
| | - Vladimír Sklenář
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotlářská 2, CZ-61137 Brno, Czech Republic, and Institut für Chemie, Technische Universität Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany
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25
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Olsen JM, Aidas K, Kongsted J. Excited States in Solution through Polarizable Embedding. J Chem Theory Comput 2010. [DOI: 10.1021/ct1003803] [Citation(s) in RCA: 264] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jógvan Magnus Olsen
- Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark, and Department of Chemistry, H. C. Ørsted Institute, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Kęstutis Aidas
- Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark, and Department of Chemistry, H. C. Ørsted Institute, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Jacob Kongsted
- Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark, and Department of Chemistry, H. C. Ørsted Institute, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
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26
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Houriez C, Ferré N, Siri D, Tordo P, Masella M. Structure and Spectromagnetic Properties of the Superoxide Radical Adduct of DMPO in Water: Elucidation by Theoretical Investigations. J Phys Chem B 2010; 114:11793-803. [DOI: 10.1021/jp1033307] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Céline Houriez
- UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérome Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France, and Laboratoire de Chimie du Vivant, Service d’ingénierie moléculaire des protéines, Institut de biologie et de technologies de Saclay, Commissariat a l’énergie atomique, Centre de Saclay, 91191 Gif-sur-Yvette Cedex, France
| | - Nicolas Ferré
- UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérome Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France, and Laboratoire de Chimie du Vivant, Service d’ingénierie moléculaire des protéines, Institut de biologie et de technologies de Saclay, Commissariat a l’énergie atomique, Centre de Saclay, 91191 Gif-sur-Yvette Cedex, France
| | - Didier Siri
- UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérome Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France, and Laboratoire de Chimie du Vivant, Service d’ingénierie moléculaire des protéines, Institut de biologie et de technologies de Saclay, Commissariat a l’énergie atomique, Centre de Saclay, 91191 Gif-sur-Yvette Cedex, France
| | - Paul Tordo
- UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérome Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France, and Laboratoire de Chimie du Vivant, Service d’ingénierie moléculaire des protéines, Institut de biologie et de technologies de Saclay, Commissariat a l’énergie atomique, Centre de Saclay, 91191 Gif-sur-Yvette Cedex, France
| | - Michel Masella
- UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérome Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France, and Laboratoire de Chimie du Vivant, Service d’ingénierie moléculaire des protéines, Institut de biologie et de technologies de Saclay, Commissariat a l’énergie atomique, Centre de Saclay, 91191 Gif-sur-Yvette Cedex, France
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27
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Pavone M, Biczysko M, Rega N, Barone V. Magnetic Properties of Nitroxide Spin Probes: Reliable Account of Molecular Motions and Nonspecific Solvent Effects by Time-Dependent and Time-Independent Approaches. J Phys Chem B 2010; 114:11509-14. [DOI: 10.1021/jp102232c] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Michele Pavone
- Department of Chemistry “P. Corradini”, University of Napoli Federico II and CR-INSTM “Village”, Complesso Universitario Monte Sant’Angelo, Via Cintia 80126, Napoli, Italy; and Scuola Normale Superiore di Pisa, and INFN Sezione di Pisa, Piazza dei Cavalieri 7, I-56126, Pisa, Italy
| | - Malgorzata Biczysko
- Department of Chemistry “P. Corradini”, University of Napoli Federico II and CR-INSTM “Village”, Complesso Universitario Monte Sant’Angelo, Via Cintia 80126, Napoli, Italy; and Scuola Normale Superiore di Pisa, and INFN Sezione di Pisa, Piazza dei Cavalieri 7, I-56126, Pisa, Italy
| | - Nadia Rega
- Department of Chemistry “P. Corradini”, University of Napoli Federico II and CR-INSTM “Village”, Complesso Universitario Monte Sant’Angelo, Via Cintia 80126, Napoli, Italy; and Scuola Normale Superiore di Pisa, and INFN Sezione di Pisa, Piazza dei Cavalieri 7, I-56126, Pisa, Italy
| | - Vincenzo Barone
- Department of Chemistry “P. Corradini”, University of Napoli Federico II and CR-INSTM “Village”, Complesso Universitario Monte Sant’Angelo, Via Cintia 80126, Napoli, Italy; and Scuola Normale Superiore di Pisa, and INFN Sezione di Pisa, Piazza dei Cavalieri 7, I-56126, Pisa, Italy
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28
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Stendardo E, Pedone A, Cimino P, Cristina Menziani M, Crescenzi O, Barone V. Extension of the AMBER force-field for the study of large nitroxides in condensed phases: an ab initio parameterization. Phys Chem Chem Phys 2010; 12:11697-709. [DOI: 10.1039/c001481h] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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29
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Mattar SM, Sanford J. Effects of restricted rotations and dynamic averaging on the calculated isotropic hyperfine coupling constants of the bis-dimethyl and bis-Di(trifluoromethyl) nitroxide radicals. J Phys Chem A 2009; 113:11435-42. [PMID: 19764801 DOI: 10.1021/jp9076646] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The rotational effects of the CH(3) and CF(3) groups on the electronic structure and nuclear hyperfine coupling constants (HFCCs) in dimethylnitroxide (DMNO*) and ditrifluoro-methynitroxide (TFMNO*) are investigated using the UB1LYP hybrid density functional method. The CH(3) and CF(3) HFCCs of both radicals are found to obey the McConnell relation during rotation. The two CH(3) groups of the DMNO* do not gear with each other, but the rotation of the first CH(3) group induces only a small rocking effect ( approximately 7 degrees ) in the second group. However, in TFMNO*, the fluorine atoms from different CF(3) groups are close enough so that the steric repulsion between them causes them to act as two interlocked gears, where one drives the other. Therefore, both CF(3) groups undergo full rotation. To the best of our knowledge, this is only the second example of "gearing" to be studied. Stabilization due to hyperconjugation is also a major factor that affects the magnitudes of the HFCCs of the CF(3) groups during rotational averaging. Stable configurations at specific CF(3) group orientations have a large overlap with the NO pi-electron cloud because the lobes of the hybridized p(sigma)(F(2)), p(sigma)(F(3)), p(sigma)(F(5)), and p(sigma)(F(6)) orbitals along the F-C bonds have cylindrical symmetry and are of the correct phases for hyperconjugation to occur. The calculated TFMNO* C(1)-N and C(2)-N bond orders range from 0.91 to 0.95 as the CF(3) groups are rotated. Therefore, the C-N bonds are essentially single bonds. This, in conjunction with the low rotational energy barrier of approximately 50 cm(-1), explains why the EPR intensities of the (19)F hyperfine splittings, in the range of 163-297 K, are characteristic of six equivalent rapidly rotating fluorine atoms. The TFMNO* out-of-plane NO vibrations induce additional s character at the (14)N nucleus. This increases the magnitude of the (14)N HFCC and decreases the (19)F HFCCs. As the temperature increases and because of mixing of the first excited out-of-plane vibrational state, the NO vibrational amplitudes also increase. This leads to an increased (14)N HFCC and decreased (19)F HFCCs, which is in agreement with experiment.
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Affiliation(s)
- Saba M Mattar
- Department of Chemistry and Centre for Laser, Atomic and Molecular Sciences, University of New Brunswick, Fredericton, New Brunswick, Canada.
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30
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Puzzarini C, Barone V. On the stability of X2NO radicals (X = F, Cl, Br, I). Phys Chem Chem Phys 2009; 11:11463-70. [PMID: 20024417 DOI: 10.1039/b917446j] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The stability of X(2)NO radicals has been studied by investigating the three possible dissociative channels, namely X+XNO, X(2)+NO, and NX(2)+O. While all the radicals have been found stable with respect to the latter, the second pathway shows that Br(2)NO and I(2)NO are unstable with respect to dissociation. The first dissociative channel has been thoroughly investigated with the aim of understanding whether F(2)NO and Cl(2)NO are stable and how much. This implied the molecular structures and energies of X(2)NO and XNO, with X = F, Cl, to be computed at high level of theory. The coupled cluster ansatz in conjunction with hierarchical series of basis sets has been employed, thus accounting for extrapolation to the complete basis-set limit. Core correlation as well as higher excitations in the electronic-correlation treatment have also been taken into account. It is particularly noteworthy that explicit inclusion of quadruple excitations allowed to obtain for the first time equilibrium geometries of FNO and ClNO in full quantitative agreement with their experimental counterparts.
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Affiliation(s)
- Cristina Puzzarini
- Dipartimento di Chimica G. Ciamician, Università di Bologna, Via F. Selmi 2, 40126 Bologna, Italy.
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31
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Houriez C, Ferré N, Siri D, Masella M. Further Insights into the Environmental Effects on the Computed Hyperfine Coupling Constants of Nitroxides in Aqueous Solution. J Phys Chem B 2009; 113:15047-56. [DOI: 10.1021/jp906828v] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Céline Houriez
- UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérôme Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France, UMR 8000 Laboratoire de Chimie Physique, Université Paris-Sud 11, 91405 Orsay Cedex, France, and Laboratoire de Chimie du Vivant, Service d’ingénierie moléculaire des protéines, Institut de biologie et de technologies de Saclay, Commissariat à l’énergie atomique, Centre de Saclay, 91191 Gif-sur-Yvette Cedex, France
| | - Nicolas Ferré
- UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérôme Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France, UMR 8000 Laboratoire de Chimie Physique, Université Paris-Sud 11, 91405 Orsay Cedex, France, and Laboratoire de Chimie du Vivant, Service d’ingénierie moléculaire des protéines, Institut de biologie et de technologies de Saclay, Commissariat à l’énergie atomique, Centre de Saclay, 91191 Gif-sur-Yvette Cedex, France
| | - Didier Siri
- UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérôme Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France, UMR 8000 Laboratoire de Chimie Physique, Université Paris-Sud 11, 91405 Orsay Cedex, France, and Laboratoire de Chimie du Vivant, Service d’ingénierie moléculaire des protéines, Institut de biologie et de technologies de Saclay, Commissariat à l’énergie atomique, Centre de Saclay, 91191 Gif-sur-Yvette Cedex, France
| | - Michel Masella
- UMR 6264 Laboratoire Chimie Provence, Faculté des Sciences de Saint-Jérôme Case 521, Avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France, UMR 8000 Laboratoire de Chimie Physique, Université Paris-Sud 11, 91405 Orsay Cedex, France, and Laboratoire de Chimie du Vivant, Service d’ingénierie moléculaire des protéines, Institut de biologie et de technologies de Saclay, Commissariat à l’énergie atomique, Centre de Saclay, 91191 Gif-sur-Yvette Cedex, France
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Houriez C, Ferré N, Masella M, Siri D. Quantitative evaluation of the aqueous dihydronitroxide nitrogen hyperfine coupling constant from QM/MM//MD computations. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.theochem.2008.06.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Barone V, Cimino P. Validation of the B3LYP/N07D and PBE0/N07D Computational Models for the Calculation of Electronic g-Tensors. J Chem Theory Comput 2008; 5:192-9. [DOI: 10.1021/ct800279g] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Vincenzo Barone
- Istituto per i Processi Chimico-Fisici del Consiglio Nazionale delle Ricerche, Via G. Moruzzi 1, I-56124 Pisa, Italy, and Dipartimento di Scienze Farmaceutiche, Università di Salerno, via Ponte don Melillo, I-84084 Fisciano (Sa), Italy
| | - Paola Cimino
- Istituto per i Processi Chimico-Fisici del Consiglio Nazionale delle Ricerche, Via G. Moruzzi 1, I-56124 Pisa, Italy, and Dipartimento di Scienze Farmaceutiche, Università di Salerno, via Ponte don Melillo, I-84084 Fisciano (Sa), Italy
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De Angelis F, Fantacci S, Selloni A. Alignment of the dye's molecular levels with the TiO(2) band edges in dye-sensitized solar cells: a DFT-TDDFT study. NANOTECHNOLOGY 2008; 19:424002. [PMID: 21832662 DOI: 10.1088/0957-4484/19/42/424002] [Citation(s) in RCA: 150] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
We present a theoretical study of the lineup of the LUMO of Ru(II)-polypyridyl (N3 and N719) molecular dyes with the conduction band edge of a TiO(2) anatase nanoparticle. We use density functional theory (DFT) and the Car-Parrinello scheme for efficient optimization of the dye-nanoparticle systems, followed by hybrid B3LYP functional calculations of the electronic structure and time-dependent DFT (TDDFT) determination of the lowest vertical excitation energies. The electronic structure and TDDFT calculations are performed in water solution, using a continuum model. Various approximate procedures to compute the excited state oxidation potential of dye sensitizers are discussed. Our calculations show that the level alignment for the interacting nanoparticle-sensitizer system is very similar, within about 0.1 eV, to that for the separated TiO(2) and dye. The excellent agreement of our results with available experimental data indicates that the approach of this work could be used as an efficient predictive tool to help the optimization of dye-sensitized solar cells.
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Affiliation(s)
- Filippo De Angelis
- Istituto CNR di Scienze e Tecnologie Molecolari (ISTM-CNR), c/o Dipartimento di Chimica, Università di Perugia, Via elce di Sotto 8, I-06213 Perugia, Italy
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Houriez C, Ferré N, Masella M, Siri D. Prediction of nitroxide hyperfine coupling constants in solution from combined nanosecond scale simulations and quantum computations. J Chem Phys 2008; 128:244504. [DOI: 10.1063/1.2939121] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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36
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Aidas K, Møgelhøj A, Nilsson EJK, Johnson MS, Mikkelsen KV, Christiansen O, Söderhjelm P, Kongsted J. On the performance of quantum chemical methods to predict solvatochromic effects: The case of acrolein in aqueous solution. J Chem Phys 2008; 128:194503. [DOI: 10.1063/1.2918537] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
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Barone V, Improta R, Rega N. Quantum mechanical computations and spectroscopy: from small rigid molecules in the gas phase to large flexible molecules in solution. Acc Chem Res 2008; 41:605-16. [PMID: 18307319 DOI: 10.1021/ar7002144] [Citation(s) in RCA: 128] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Interpretation of structural properties and dynamic behavior of molecules in solution is of fundamental importance to understand their stability, chemical reactivity, and catalytic action. While information can be gained, in principle, by a variety of spectroscopic techniques, the interpretation of the rich indirect information that can be inferred from the analysis of experimental spectra is seldom straightforward because of the subtle interplay of several different effects, whose specific role is not easy to separate and evaluate. In such a complex scenario, theoretical studies can be very helpful at two different levels: (i) supporting and complementing experimental results to determine the structure of the target molecule starting from its spectral properties; (ii) dissecting and evaluating the role of different effects in determining the observed spectroscopic properties. This is the reason why computational spectroscopy is rapidly evolving from a highly specialized research field into a versatile and widespread tool for the assignment of experimental spectra and their interpretation in terms of chemical physical effects. In such a situation, it becomes important that both computationally and experimentally oriented chemists are aware that new methodological advances and integrated computational strategies are available, providing reliable estimates of fundamental spectral parameters not only for relatively small molecules in the gas phase but also for large and flexible molecules in condensed phases. In this Account, we review the most significant methodological contributions from our research group in this field, and by exploiting some recent results of their application to the computation of IR, UV-vis, NMR, and EPR spectral parameters, we discuss the microscopic mechanisms underlying solvent and vibrational effects on the spectral parameters. After reporting some recent achievements for the study of excited states by first principle quantum mechanical approaches, we focus on the treatment of environmental effects by means of mixed discrete-continuum solvent models and on effective methods for computing vibronic contributions to the spectra. We then discuss some new developments, mainly based on time-dependent approaches, allowing us to go beyond the determination of spectroscopic parameters toward the simulation of line widths and shapes. Although further developments are surely needed to improve the accuracy and effectiveness of several items in the proposed approach, we try to show that the first important steps toward a direct comparison between the results obtained in vitro and those obtained in silico have been made, making easier fruitful crossovers among experiments, computations and theoretical models, which would be decisive for a deeper understanding of the spectral behavior associated with complex systems and processes.
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Affiliation(s)
- Vincenzo Barone
- LSDM and CR-INSTM VILLAGE, Chemistry Department Paolo Corradini, University Federico II, Complesso Universitario Monte S. Angelo, via Cintia, I-80126 Napoli, Italy
| | - Roberto Improta
- LSDM and CR-INSTM VILLAGE, Chemistry Department Paolo Corradini, University Federico II, Complesso Universitario Monte S. Angelo, via Cintia, I-80126 Napoli, Italy
| | - Nadia Rega
- LSDM and CR-INSTM VILLAGE, Chemistry Department Paolo Corradini, University Federico II, Complesso Universitario Monte S. Angelo, via Cintia, I-80126 Napoli, Italy
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38
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Accurate and feasible computations of structural and magnetic properties of large free radicals: The PBE0/N07D model. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2008.01.080] [Citation(s) in RCA: 104] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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39
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Asher JR, Kaupp M. Car-Parrinello molecular dynamics simulations and EPR property calculations on aqueous ubisemiquinone radical anion. Theor Chem Acc 2008. [DOI: 10.1007/s00214-007-0408-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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40
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Brancato G, Rega N, Barone V. Unraveling the Role of Stereo-electronic, Dynamical, and Environmental Effects in Tuning the Structure and Magnetic Properties of Glycine Radical in Aqueous Solution at Different pH Values. J Am Chem Soc 2007; 129:15380-90. [DOI: 10.1021/ja074910t] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Giuseppe Brancato
- Contribution from the Chemistry Department Paolo Corradini, University Federico II, Complesso Universitario Monte S. Angelo, via Cintia, I-80126 Napoli, Italy
| | - Nadia Rega
- Contribution from the Chemistry Department Paolo Corradini, University Federico II, Complesso Universitario Monte S. Angelo, via Cintia, I-80126 Napoli, Italy
| | - Vincenzo Barone
- Contribution from the Chemistry Department Paolo Corradini, University Federico II, Complesso Universitario Monte S. Angelo, via Cintia, I-80126 Napoli, Italy
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41
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Improta R, Scalmani G, Frisch MJ, Barone V. Toward effective and reliable fluorescence energies in solution by a new state specific polarizable continuum model time dependent density functional theory approach. J Chem Phys 2007; 127:074504. [PMID: 17718617 DOI: 10.1063/1.2757168] [Citation(s) in RCA: 372] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A state specific (SS) model for the inclusion of solvent effects in time dependent density functional theory (TD-DFT) computations of emission energies has been developed and coded in the framework of the so called polarizable continuum model (PCM). The new model allows for a rigorous and effective treatment of dynamical solvent effects in the computation of fluorescence and phosphorescence spectra in solution, and it can be used for studying different relaxation time regimes. SS and conventional linear response (LR) models have been compared by computing the emission energies for different benchmark systems (formaldehyde in water and three coumarin derivatives in ethanol). Special attention is given to the influence of dynamical solvation effects on LR geometry optimizations in solution. The results on formaldehyde point out the complementarity of LR and SS approaches and the advantages of the latter model especially for polar solvents and/or weak transitions. The computed emission energies for coumarin derivatives are very close to their experimental counterparts, pointing out the importance of a proper treatment of nonequilibrium solvent effects on both the excited and the ground state energies. The availability of SS-PCM/TD-DFT models for the study of absorption and emission processes allows for a consistent treatment of a number of different spectroscopic properties in solution.
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Affiliation(s)
- Roberto Improta
- Dipartimento di Chimica, Università Federico II, Complesso Monte S. Angelo, via Cintia, I-80126 Napoli, Italy.
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42
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Cimino P, Pavone M, Barone V. Halogen bonds between 2,2,6,6-tetramethylpiperidine-N-oxyl radical and CxHyFzI species: DFT calculations of physicochemical properties and comparison with hydrogen bonded adducts. J Phys Chem A 2007; 111:8482-90. [PMID: 17685598 DOI: 10.1021/jp073567b] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Structural, thermodynamic, and magnetic properties of adducts between the 2,2,6,6-tetramethylpiperidine-N-oxyl radical and representative hydrogen and halogen bond donors in solution have been investigated by an integrated computational tool including hybrid density functionals and discrete-continuum solvent models. From a quantitative point of view, the computed values show a fair agreement with experiment when environmental effects are taken into the proper account. From a more general point of view, our analysis points out a number of analogies, but also some difference, between hydrogen and halogen bond, which have been interpreted in terms of the various effects tuning thermodynamic and spectroscopic parameters.
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Affiliation(s)
- Paola Cimino
- Dipartimento di Chimica, Università di Napoli Federico II, Complesso Universitario Monte S. Angelo, via Cintia, I-80126, Napoli, Italy.
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43
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Brancato G, Rega N, Barone V. A quantum mechanical/molecular dynamics/mean field study of acrolein in aqueous solution: analysis of H bonding and bulk effects on spectroscopic properties. J Chem Phys 2007; 125:164515. [PMID: 17092113 DOI: 10.1063/1.2359723] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
A novel molecular dynamics methodology recently proposed by our group [Rega et al., Chem. Phys. Lett. 422, 367 (2006)], which is based on an integrated hybrid potential rooted in high level quantum mechanical methods using localized basis functions and nonperiodic boundary conditions, has been applied to study acrolein in aqueous solution. The solute structural rearrangement and its hydrogen-bonding pattern due to the interactions with water have been analyzed in some detail. Moreover, the solvent effects on the UV n-->pi* vertical transition and on the NMR 13C and 17O shielding constants of acrolein have been investigated theoretically by performing a posteriori quantum mechanical calculations on a statistically significant number of snapshots extracted from both gas-phase and aqueous solution simulations. Results show that such effective computational strategy can be successfully used to improve our understanding, at atomic level, of important spectroscopic observables.
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Affiliation(s)
- Giuseppe Brancato
- Dipartimento di Chimica, Università Federico II, Complesso Monte S. Angelo, Via Cintia, I-80126 Napoli, Italy
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44
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Pavone M, Cimino P, Crescenzi O, Sillanpää A, Barone V. Interplay of Intrinsic, Environmental, and Dynamic Effects in Tuning the EPR Parameters of Nitroxides: Further Insights from an Integrated Computational Approach. J Phys Chem B 2007; 111:8928-39. [PMID: 17608525 DOI: 10.1021/jp0727805] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The role of stereoelectronic, environmental, and short-time dynamic effects in tuning the hyperfine and gyromagnetic tensors of a prototypical nitroxide spin probe has been investigated by an integrated computational approach based on extended Lagrangian molecular dynamics and discrete-continuum solvent models. Trajectories were generated in two protic solvents as well as in the gas phase for reference; structural analysis of the dynamics, and comparison with optimized solute-solvent clusters, allowed for the identification of the prevailing solute-solvent hydrogen-bonding patterns and helped to define the strategy for the computation of magnetic parameters. This was performed in a separate step, on a large number of frames, by a high-level DFT approach coupling the PBE0 hybrid functional with a tailored basis set and with proper account of specific and bulk solvent effects. Remarkable changes in solvation networks are found on going from aqueous to methanol solution, thus providing a rationalization of indirect experimentally available evidence. The computed magnetic parameters are in satisfactory agreement with the available measured values and allow for an unbiased evaluation of the role of different effects in tuning the overall EPR observables. Apart from their intrinsic interest, our results pave the route toward the development of tunable detection protocols based on specific spectroscopic signatures.
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Affiliation(s)
- Michele Pavone
- Dipartimento di Chimica and INSTM, Università di Napoli Federico II Complesso Universitario di Monte S. Angelo, Via Cintia, I-80126 Napoli, Italy
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45
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Mattar SM. Accurate calculation of the phenyl radical's magnetic inequivalency, relative orientations of its spin hamiltonian tensors, and its electronic spectrum. J Phys Chem A 2007; 111:251-60. [PMID: 17214461 DOI: 10.1021/jp065752f] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The phenyl radical's electronic structure, magnetic inequivalency, spin Hamiltonian tensor components, and the relative orientation of their principal axes are computed by Neese's coupled-perturbed Kohn-Sham hybrid density functional (CPKS-HDF) technique in a moderate amount of time without resorting to expensive post-Hartree-Fock techniques. The g tensor component values are in excellent agreement with those determined experimentally and differ by less than 370 ppm. The computed hydrogen nuclear hyperfine tensors, A(1H), are also found to be in very good agreement with their experimental counterparts. The correlation of the radical's electronic structure with its g and A numerical values corroborates that it has a 2A(1) ground state. In accordance with our previous studies on the equivalency of planar radicals that possess C(2v) symmetry, the in-plane g and A(1H) principal axes should not be parallel to one another. Consequently, the spatially equivalent ortho (1H(2), 1H(6)) and meta (1H(3), 1H(5)) proton pairs should be magnetically inequivalent. This was confirmed in both the present computations and the simulation of the EPR solid-state spectrum. To the best of our knowledge, this is the first aromatic in-plane sigma-type radical whose magnetic inequivalency is studied both computationally and experimentally. To properly interpret the radical's electronic excitation spectra, the spectroscopy-oriented dedicated difference configuration interaction (SORCI) procedure was employed. Aside from a slight overestimation, the method seems to be capable of reproducing the C(6)H(5)* electronic vertical excitation energies in the range of 0-50,000 cm(-1). These vertical excitations, in conjunction with the corresponding orbit and spin orbit matrix elements, were also used to compute the g tensor components, employing the sum-over-states technique. Due to the limited number of computed roots and excited states, the results were marginally inferior to those obtained using the CPKS-HDF method.
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Affiliation(s)
- Saba M Mattar
- Department of Chemistry and Centre for Laser, Atomic and Molecular Sciences, University of New Brunswick, Fredericton, New Brunswick, Canada E3B 6E2.
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46
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Barone V, Cimino P, Crescenzi O, Pavone M. Ab initio computation of spectroscopic parameters as a tool for the structural elucidation of organic systems. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.theochem.2006.12.056] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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47
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48
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Theoretical modeling of spectroscopic properties of molecules in solution: toward an effective dynamical discrete/continuum approach. Theor Chem Acc 2007. [DOI: 10.1007/s00214-006-0216-z] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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49
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Asher JR, Kaupp M. Hyperfine Coupling Tensors of the Benzosemiquinone Radical Anion from Car–Parrinello Molecular Dynamics. Chemphyschem 2007; 8:69-79. [PMID: 17121407 DOI: 10.1002/cphc.200600325] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Based on Car-Parrinello ab initio molecular dynamics simulations of the benzosemiquinone radical anion in both aqueous solution and the gas phase, density functional calculations provide the currently most refined EPR hyperfine coupling (HFC) tensors of semiquinone nuclei and solvent protons. For snapshots taken at regular intervals from the molecular dynamics trajectories, cluster models with different criteria for inclusion of water molecules and an additional continuum solvent model are used to analyse the HFCs. These models provide a detailed picture of the effects of dynamics and of different intermolecular interactions on the spin-density distribution and HFC tensors. Comparison with static calculations allows an assessment of the importance of dynamical effects, and of error compensation in static DFT calculations. Solvent proton HFCs depend characteristically on the position relative to the semiquinone radical anion. A point-dipolar model works well for in-plane hydrogen-bonded protons but deviates from the quantum chemical values for out-of-plane hydrogen bonding.
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Affiliation(s)
- James R Asher
- Institut für Anorganische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
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50
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De Angelis F, Fantacci S, Sgamellotti A. An integrated computational tool for the study of the optical properties of nanoscale devices: application to solar cells and molecular wires. Theor Chem Acc 2007. [DOI: 10.1007/s00214-006-0224-z] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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