Shedding Light on Helical Microtubules: Real-Time Observations of Microtubule Self-Assembly by Light Microscopy

Crystallographic models of ribbons and ribbon-based J-aggregate nanotubes from the geometry of tube ends

Self-assembly into tubular structures typically proceeds by helical winding of ribbon intermediates, however, only the central parts of the tubes, that retain no information on the ribbon geometry, have received attention so far. We propose the procedure of establishing the crystal structure of ribbons and ribbon-based tubes on the basis of crystallographic analysis of the tube-end geometry, where the terminal parts of the ribbons fold and form characteristic mono/bilayer polygonal shapes. The terminal parts of flattened J-aggregate nanotubes of trimethine cyanine dye were clearly resolved in electron microscopy and atomic force microscopy images, and the original parallelogram shape of ribbons was reconstructed and interpreted as a two-dimensional [1-10]/[010] facetted crystal with inclined molecular π-stacks parallel to the long ribbon side. The back-reconstructed molecular orientations in a tube wall tend to be close to the tube normal. A two-stage "nucleation and growth" type model of the ribbon to tube transition is proposed that takes into account the established ribbon mechanical asymmetry. The model includes closure of the single ribbon loop as a nucleation event and explains, mostly observed in experiments, nearly rectangular shapes of tubes by the transition kinetics. Due to its universal character, the suggested approach can be applied to any ribbon-based tubes, regardless of their chemical composition.

Real-time Observation of Macroscopic Helical Morphologies under Optical Microscope: A Curious Case of π-π Stacking Driven Molecular Self-assembly of an Organic Gelator Devoid of Hydrogen Bonding

Supramolecular assemblies such as tubules/helix/double helix/helical tape etc. are usually submicron objects preventing direct observation under optical microscope. Chiral-pure form of these assemblies is important for potential applications. Herein, we report a rare phenomenon wherein a DMSO gel of a simple terpyridine derivative [(4-CNPhe)4PyTerp] produced macroscopic helical morphologies (μm length scale) which could be observed under optical microscope, formation of which could be monitored by optical videography, stable enough to withstand acidic vapour, robust enough to display reversible gel↔sol in response to acidic and ammonia vapour and sturdy enough to be maneuvered with a needle. These properties appeared to be unique to the title compound as the other related derivatives failed to display such assembly structures. SXRD and MD simulation studies suggested that weak interactions (π-π stacking) played a crucial role in the self-assembly process.

Revealing the mechanisms of vesicle formation with multiple spectral methods

The investigation of the self-assembly of amphiphilic molecules and the formation of micelles/vesicles has attracted significant attention. However, in situ and real-time methods for such studies are rare. Here, a surface-sensitive second harmonic generation (SHG) technique was applied to study the formation of vesicles in solutions of an anti-cancer drug, doxorubicin (DOX), and a generally used surfactant (sodium bis (2-ethylhexyl) sulfosuccinate, AOT). With the aid of two-photon fluorescence (TPF), Rayleigh scattering and TEM, we revealed the structural evolution of the aggregated micelles/vesicles. It was found that AOT and DOX molecules rapidly aggregated and formed micelles in the solution. The residual DOX then acted as a "glue" that induced the aggregating/growing of the micelles and the transformation from aggregates to vesicles. The existence of lipid films, which was considered as the necessary intermediate state for vesicle formation, was excluded via the SHG observations, indicating that hollow shells may be directly transformed from solid aggregated micelles in the self-assembly formation of complex vesicles. The combined spectroscopic methods were also used to investigate the formation of vesicles from a commonly used lipid (i.e., 1,2-dioleoyl-sn-glycero-3-phospho-rac-(1-glycerol) sodium salt, DOPG) from its stacked bilayers. The swelling, curving and sealing of the DOPG bilayers for vesicle formation was monitored and clear dynamics were revealed. This work shows that the vesicle formation mechanism varies with the initial state of the surfactant/lipid molecules. It not only demonstrates the capability of the combined spectroscopic methods in investigating the aggregated systems but also provides new insight for understanding the formation of vesicles.

Tuning the shell structure of peptide nanotubes with sodium tartrate: From monolayer to bilayer

Though the function of peptide based nanotubes are well correlated with its shape and size, controlling the dimensions of nanotubes still remains a great challenge in the field of peptide self-assembly. Here, we demonstrated that the shell structure of nanotubes formed by a bola peptide Ac-KI₃VK-NH₂ (KI₃VK, in which K, I, and V are abbreviations of lysine, isoleucine, and valine) can be regulated by mixing it with the salt sodium tartrate (STA). The ratio of KI₃VK and STA had a great impact on shell structure of the nanotubes. Bilayer nanotubes can be constructed when the molar ratio of KI₃VK and STA was less than 1:2. Both the two hydroxyls and the negative charges carried by STA were proved to play important roles in the bilayer nanotubes formation. Observations of different intermediates provided obvious evidence for the varied pathway of the bilayer nanotubes formation. Based on these experimental results, the possible mechanism for bilayer nanotubes formation was proposed. Such a study provides a simple and effective way for regulating the shell structure of the nanotubes and may expand their applications in different fields.

Ordered Packing of β-Sheet Nanofibrils into Nanotubes: Multi-hierarchical Assembly of Designed Short Peptides

Although it is well-known proteins and their complexes are hierarchically organized and highly ordered structures, it remains a major challenge to replicate their hierarchical self-assembly process and to fabricate multihierarchical architectures with well-defined shapes and monodisperse characteristic sizes via peptide self-assembly. Here we describe an amphiphilic short peptide Ac-I₃GGHK-NH₂ that first preassembles into thin, left-handed β-sheet nanofibrils, followed by their ordered packing into right-handed nanotubes. The key intermediate morphology and structures featuring the hierarchical process are simultaneously demonstrated. Further mechanistic exploration with the variants Ac-I₃GGGK-NH₂, Ac-I₃GGFK-NH₂, and Ac-I₃GG^DH^DK-NH₂ reveals the vital role of multiple His-His side chain interactions between nanofibrils in mediating higher-order assembly and architectures. Altogether, our findings not only advance current understanding of hierarchical assembly of peptides and proteins but also afford a paradigm of how to take advantage of side chain interactions to construct higher-order assemblies with enhanced complexities.

Diacetylene-Functionalized Dendrons: Self-Assembled and Photopolymerized Three-Dimensional Networks for Advanced Self-Healing and Wringing Soft Materials

The physical properties of supramolecular soft materials strongly depend on the molecular packing structures constructed by thermodynamically and kinetically controlled molecular self-assembly. To investigate the relationship between molecular function and self-assembled molecular packing structure, a series of diacetylene (DA)-based supramolecules was synthesized by chemically connecting flexible dendrons to DA with amide (aDA-D) or ester (eDA-D) functions. The three-dimensional (3D) organogel network of amide-functionalized aDA-D was prepared in both polar and nonpolar solvents due to the intermolecular hydrogen bonding. 3D networks of aDA-D can be further stabilized by topochemical photopolymerization. The self-healing behavior of aDA-D was observed in the sheet-like structure formed in n-dodecane by the hydrophobic interaction between the gelator and solvent. The wringing behavior of aDA-D was also demonstrated using the dynamic interaction of amide function with n-butanol solvent. Kinetically controlled and photostabilized 3D networks can be a key component from biomedical devices to soft robotic applications.

Hierarchical chirality expression of gemini surfactant aggregates via equilibrium between chiral nucleotide and nonchiral mono-anions

The assembling behaviors of nonchiral dicationic amphiphilic molecules (gemini) in the presence of the mixture of chiral anionic nucleotides and nonchiral anions are investigated. We demonstrate that subtle balance of various physico-chemical parameters and the competition between chiral and nonchiral anions at the interface of gemini assemblies influences the expression of molecular chirality at the micrometer scale through the hierarchical molecular assembly.

Curved boundaries and chiral instabilities - two sources of twist in homeotropic nematic tori

Many liquid crystalline systems display spontaneous breaking of achiral symmetry, as achiral molecules aggregate into large chiral domains. In confined cylinders with homeotropic boundary conditions, chromonic liquid crystals - which have a twist elastic modulus which is at least an order of magnitude less than their splay and bend counter parts - adopt a twisted escaped radial texture (TER) to minimize their free energy, whilst 5CB - which has all three elastic constants roughly comparable - does not. In a recent series of experiments, we have shown that 5CB confined to tori and bent cylindrical capillaries with homeotropic boundary conditions also adopts a TER structure resulting from the curved nature of the confining boundaries [P. W. Ellis et al., Phys. Rev. Lett., 2018, 247803]. We shall call this microscopic twist, as the twisted director organization not only depends on the confinement geometry but also on the values of elastic moduli. Additionally, we demonstrate theoretically that the curved geometry of the boundary induces a twist in the escaped radial (ER) texture. Moving the escaped core of the structure towards the center of the torus not only lowers the splay and bend energies, but lowers the energetic cost of this distinct source for twist that we shall call geometric twist. As the torus becomes more curved, the ideal location for the escaped core approaches the inner radius of the torus.

Generation of twisted nanowires with achiral organic amphiphilic copper complexes

Drying under solvent atmosphere (DUSA) was investigated as an experimental technique to generate self-assembled nanowires and needles from solutions of organic molecules under controlled conditions. Experimental observations of twisted nanowires are reported. These twisted nanowires were obtained by drying of solutions of achiral molecules under solvent controlled atmospheres: achiral, amphiphilic copper complexes were dissolved in an achiral solvent and these solutions were dried under controlled conditions. Two structurally related copper complexes were investigated. Microscopic investigations of the resulting nanowires revealed, and scanning electron microscopy confirmed: self-assembled twisted ribbons could be selectively obtained from one of these compounds. This behavior could be explained by comparing the ratio of the size of the head group and the overall length of the molecules. The occurrence of chiral filaments and chiral phases of nanosegregated filaments are rare in achiral compounds. The occurance of such twisted filaments is thought to be related to symmetry-breaking during a phase transition from liquid crystalline or lyotropic liquid crystalline phases to a nanosegregated phase. In the reported experiments, the concentration of a solution was gradually increased until crystallization occurred. The results clearly show how DUSA can be applied to investigate the capability of achiral substances to yield twisted filaments. Moreover, the investigated compounds had high-enough charge carrier mobilities, such that the twisted filaments obtained are candidates for self-assembled, intrinsically coiled nano-inductivities.

Morphology transition in helical tubules of a supramolecular gel driven by metal ions

Our aim to access a particular chemical functionality on helical tubules has been achieved by the rational molecular design and synthesis of glucono-appended cardanol derivatives. For the first time, we report a chiral molecular packing with α-helical tubules, and chiral symmetry-breaking upon exposure to Cu²⁺ that generated the final ordered structure via an in situ morphological transition without undergoing any phase change.

On the stability of lithocholate derivative supramolecular tubules

Solubility and calorimetry data provide the description of a phase map for metastable supramolecular nanotubes of biological origin.

Dynamic Evolution of Coaxial Nanotoruloid in the Self-Assembled Naphthyl-Containing l-Glutamide

Supramolecular gelation provides an efficient way of fabricating functional soft materials with various nanostructures. Amphiphiles containing naphthyl group and dialkyl l-glutamide with a methylene spacer, 1NALG and 2NALG, have been designed and their self-assembly in various organic solvents were investigated. Both of these compounds formed organogels in organic solvents. In the case of the alcohol solvents, the initially formed organogel underwent gel-precipitate transformation, which process was monitored by the UV-vis, CD spectra, and SEM observation. It was revealed that both the compounds formed the nanofiber structures in gel phases. Interestingly, in alcohol solvents, during the phase transition from the gel to precipitates, the nanofibers gradually transformed into a series of long coaxial solid nanotoruloid, a unique nanostructure that has never been observed in other self-assembly systems. In addition, during the gel formation, the nanofibers with supramolecular chirality or M-chirality were obtained. However, the coaxial nanotoruloid showed an inversed P-chirality. Comprehensive analysis based on various data and the gelator structure, substituent position, type of organic solvents, it was suggested that the synergistic interactions between the amide H-bond and π-π stacking of the naphthyl groups played important roles in the formation of the gels as well as the nanofiber, while the H-bonding ability of alcohol to the amide group can subtly regulate the gelator-gelator interactions and lead to the dynamic and hierarchical evolution of the unique nanostructures.

Morphology engineering: dramatic roles of serine and threonine in supramolecular assembly

Macrocycles containing serine self-assembled into fibres, while threonine induced vesicular self-assembly. Macrocycles with serine can be driven to form vesicular assembly by incorporating a non-planar spacer.

Polymorphic transformation towards formation of nanotubes by self-assembly of an achiral molecule

In this paper, nanotubes with a uniform diameter were prepared by self-assembly of an achiral azobenzene-containing fatty acid. The polymorphic transformation of the assemblies during the cooling process was systematically studied. By controlling the incubation temperature, different morphologies, such as membranes, stripes, helical ribbons and tubes, were all obtained in our experiment. These elements were all predicted by Selinger et al. in the theoretical model of the formation of nanotubes. To the best of our knowledge, this is the first experimental example to fully support their theory.

Different nanostructures caused by competition of intra- and inter-β-sheet interactions in hierarchical self-assembly of short peptides

To understand how molecular interactions lead to the self-assembly of twisted, helical and flat nanoribbons, we have compared the hierarchical self-assembly processes of three selected octapeptides with the same amino acid composition but different sequences by both experiments and molecular dynamics (MD) simulations. KE-F8 (NH2-KEFFFFKE-CONH2) and EK-F8 (NH2-KEFFFFEK-CONH2) have the same distribution of hydrophobic residues and only differ by swapping the positive and negative charged residues at their C-terminals, while KFE-8 (NH2-KFEFKFEF-CONH2) differs from KE-F8 and EK-F8 by having all hydrophobic and charged residues evenly distributed. MD simulations indicated that the competition between electrostatic and hydrophobic interactions at the molecular level results in different initial packing modes: KE-F8 monomers form completely matched anti-parallel β-sheets, EK-F8 monomers align with one residue shifting, and KFE-8 monomers pack β-sheets with two heterogeneous surfaces, consistent with previously suggested models. Driven by inter-strand and inter-sheet interactions, further growth of these molecular templates leads to larger oligomers with different twisting and stacking degrees, which are structurally consistent with the experimentally observed self-assembled morphologies. Further MD simulations showed that the competition between intra-β-sheet and inter-β-sheet interactions is responsible for the different twisting and stacking degrees of β-sheets and the subsequent formation of different nanostructures (twisted ribbons for KE-F8, helical ribbons/tubes for EK-F8 and flat ribbons for KFE-8). This study thus provided an important mechanistic insight into the fine tuning of molecular packing and interactions via peptide sequence variation leading to controllable self-assembly of twisted, helical and flat nanostructures.

Role of synergistic π–π stacking and X–H⋯Cl (X = C, N, O) H-bonding interactions in gelation and gel phase crystallization

Gel phase crystallization in a transparent gel via synergistic non-covalent interactions has been reported along with various remarkable features.

Exploiting supramolecular synthons in designing gelators derived from multiple drugs

A simple strategy for designing salt-based supramolecular gelators comprised of various nonsteroidal anti-inflammatory drugs (NSAIDs) and amantadine (AMN) (an antiviral drug) has been demonstrated using a supramolecular synthon approach. Single-crystal and powder X-ray diffraction established the existence of the well-studied gel-forming 1D supramolecular synthon, namely, primary ammonium monocarboxylate (PAM) synthon in all the salts. Remarkably five out of six salts were found to be capable of gelling methyl salicylate (MS)-an important ingredient in commercially available topical gels; one such selected biocompatible salt displayed an anti-inflammatory response in prostaglandin E2 (PGE2 ) assay, thereby indicating their plausible biomedical applications.

Self-assembly of lipidated pseudopeptidic triazolophanes to vesicles

We have transformed the amino acid serine to 32-membered lipidated cyclophanes employing CuAAc reaction. These serine-based lipidated triazolophanes assemble to sturdy and robust vesicles.

Vesicle-mediated growth of tubular branches and centimeter-long microtubes from a single molecule

The mechanism by which small molecules assemble into microscale tubular structures in aqueous solution remains poorly understood, particularly when the initial building blocks are non-amphiphilic molecules and no surfactant is used. It is here shown how a subnanometric molecule, namely p-aminothiophenol (p-ATP), prepared in normal water with a small amount of ethanol, spontaneously assembles into a new class of nanovesicle. Due to Brownian motion, these nanostructures rapidly grow into micrometric vesicles and start budding to yield macroscale tubular branches with a remarkable growth rate of ∼20 μm s⁻¹. A real-time visualization by optical microscopy reveals that tubular growth proceeds by vesicle walk and fusion on the apex (growth cone) and sides of the branches and ultimately leads to the generation of centimeter-long microtubes. This unprecedented growth mechanism is triggered by a pH-activated proton switch and maintained by hydrogen bonding. The vesicle fusion-mediated synthesis suggests that functional microtubes with biological properties can be efficiently prepared with a mixture of appropriate diaminophenyl blocks and the desired macromolecule. The reversibility, timescale, and very high yield (90%) of this synthetic approach make it a valuable model for the investigation of hierarchical and structural transition between organized assemblies with different size scales and morphologies.