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Samanta S, Sengupta S, Roy T, Pal A, Dey A. Catalytic Aldehyde Decarbonylase Activity by a Thiolate-Bound Iron Porphyrin: Observation of a Peroxyhemiacetal Intermediate during Catalysis. J Am Chem Soc 2025; 147:12285-12297. [PMID: 40134244 DOI: 10.1021/jacs.5c01859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2025]
Abstract
Aldehyde decarbonylation is a key chemical step in nature that is involved in the biosynthesis of hormones and long-chain hydrocarbons where O2 is the oxidant. A cytochrome P450 enzyme, aromatase, catalyzes this reaction, where a thiolate-bound ferric peroxide is proposed to be the oxidant. Despite several attempts, only substoichiometric yields have been reported by synthetic iron porphyrins in organic solvents using peroxide. Several synthetic nonheme complexes have been reported to catalyze decarbonylation in stoichiometric yields using peroxides as oxidants. Catalytic decarbonylation with molecular O2 using either heme or nonheme complexes remains elusive. Iron picket-fence porphyrin is attached to thiol-terminated self-assembled monolayers. In situ resonance Raman spectroscopy reveals the accumulation of an Fe(III)-OOH intermediate with Fe-O and O-O vibrations at 579 cm-1 and 798 cm-1, respectively, during heterogeneous electrocatalytic O2 reduction in a pH 7 buffer solution. In the presence of different aldehydes in solution, catalytic aldehyde decarbonylase reactivity is observed with TON and TOF of ∼ 83000 and 277 s-1, respectively, for 2-methyl-2-phenylpropionaldehyde and ∼ 13000 and 45 s-1, respectively, for undecanal using molecular O2 in a pH 7 buffer solution. In situ SERRS-RDE in the presence of 2-phenylpropionaldehyde indicates the formation of a peroxyhemiacetal species with Fe-O, O-O, and C-O vibrations at 520 cm-1, 833 cm-1, and 1185 cm-1, respectively, as an intermediate in catalytic aldehyde decarbonylase activity.
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Affiliation(s)
- Soumya Samanta
- School of Chemical Science, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
| | - Srijan Sengupta
- School of Chemical Science, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
| | - Triparna Roy
- School of Chemical Science, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
| | - Apurba Pal
- School of Chemical Science, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
| | - Abhishek Dey
- School of Chemical Science, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
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Nayek A, Poria RK, Ahmed ME, Patra S, Dey SG, Dey A. Hydrogen Oxidation by Bioinspired Models of [FeFe]-Hydrogenase. ACS ORGANIC & INORGANIC AU 2025; 5:105-116. [PMID: 40190389 PMCID: PMC11969278 DOI: 10.1021/acsorginorgau.4c00073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/21/2024] [Revised: 11/06/2024] [Accepted: 11/20/2024] [Indexed: 04/09/2025]
Abstract
Synthetic azadithiolate-bridged diiron clusters serve as structural analogues of the active site of [FeFe]-hydrogenases. Recently, an o-alkyl substitution of aniline-based azadithiolate bridge allowed these synthetic models to both oxidize H2 and reduce H+, i.e., bidirectional catalysis. Hydrogen oxidation by synthetic analogues of hydrogenases is rare, and even rarer is the ability of diiron hexacarbonyls to oxidize H2. A series of synthetic azadithiolate-bridged biomimetic diiron hexacarbonyl complexes are synthesized where the substitution in the para position of the ortho-methyl aniline in the azadithiolate bridge is systematically varied between electron-withdrawing and electron-donating groups to understand factors that control H2 oxidation by diiron hexacarbonyl analogues of [FeFe]-hydrogenases. The results show that the substituents in the para position of the ortho-ethyl aniline affect the electronic structure of the azadithiolate bridge as well as that of the diiron cluster. The electron-withdrawing -NO2 substituent results in faster H2 oxidation relative to that of a -OCH3 substituent.
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Affiliation(s)
- Abhijit Nayek
- School of Chemical Science, Indian Association for
the Cultivation of Science, 2A & 2B Raja S.C Mullick Road, Kolkata, West Bengal 700032 India
| | - Rabin Kumar Poria
- School of Chemical Science, Indian Association for
the Cultivation of Science, 2A & 2B Raja S.C Mullick Road, Kolkata, West Bengal 700032 India
| | - Md Estak Ahmed
- School of Chemical Science, Indian Association for
the Cultivation of Science, 2A & 2B Raja S.C Mullick Road, Kolkata, West Bengal 700032 India
| | - Suman Patra
- School of Chemical Science, Indian Association for
the Cultivation of Science, 2A & 2B Raja S.C Mullick Road, Kolkata, West Bengal 700032 India
| | - Somdatta Ghosh Dey
- School of Chemical Science, Indian Association for
the Cultivation of Science, 2A & 2B Raja S.C Mullick Road, Kolkata, West Bengal 700032 India
| | - Abhishek Dey
- School of Chemical Science, Indian Association for
the Cultivation of Science, 2A & 2B Raja S.C Mullick Road, Kolkata, West Bengal 700032 India
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Ahmed ME, Das P, Ahamed SM, Chattopadhyay S, Nayek A, Mondal M, Malik S, Dey A. Amplifying Reactivity of Bio-Inspired [FeFe]-Hydrogenase Mimics by Organic Nanotubes. Chemistry 2024; 30:e202403011. [PMID: 39206678 DOI: 10.1002/chem.202403011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2024] [Revised: 08/23/2024] [Accepted: 08/26/2024] [Indexed: 09/04/2024]
Abstract
A bio-inspired FeFe hydrogenase model which catalyses hydrogen evolution reaction (HER) in acidic solutions is immobilized in polyaniline (PANI)-based nanotubes. A combination of analytical techniques reveals that this construct maintains both the molecular signatures of the bio-inspired complex and the material properties of PANI. The amine and imine-rich environment of the PANI chain amplifies the inherent HER activity of the bio-inspired complex, allowing electrocatalytic HER at neutral pH, with lower overpotentials and higher current densities compared to the bio-inspired complex alone. This construct retains the oxygen stability of the bio-inspired complex and remains stable through several hours of aerobic electrolysis, producing only 6.5 % H₂O₂ from the competing oxygen reduction reaction (ORR).
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Affiliation(s)
- Md Estak Ahmed
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
| | - Puspendu Das
- School of Applied and Interdisciplinary Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
| | - Sk Mustak Ahamed
- School of Applied and Interdisciplinary Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
| | - Samir Chattopadhyay
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
| | - Abhijit Nayek
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
| | - Mintu Mondal
- School of Physical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
| | - Sudip Malik
- School of Applied and Interdisciplinary Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
| | - Abhishek Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
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Sarkar P, Sarkar S, Nayek A, Adarsh NN, Pal AK, Datta A, Dey A, Ghosh P. Low Potential CO 2 Reduction by Inert Fe(II)-Macrobicyclic Complex: A New Concept of Cavity Assisted CO 2 Activation. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2304794. [PMID: 37888827 DOI: 10.1002/smll.202304794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 10/04/2023] [Indexed: 10/28/2023]
Abstract
The advantage of a pre-organized π-cavity of Fe(II) complex of a newly developed macrobicycle cryptand is explored for CO2 reduction by overcoming the problem of high overpotential associated with the inert nature of the cryptate. Thus, a bipyridine-centered tritopic macrobicycle having a molecular π-cavity capable of forming Fe(II) complex as well as potential for CO2 encapsulation is synthesized. The inert Fe(II)-cryptate shows much lower potential in cyclic voltammetry than the Fe(II)-tris-dimethylbipyridine (Fe-MBP) core. Interestingly, this cryptate shows electrochemical CO2 reduction at a considerably lower potential than the Fe-MBP inert core. Therefore, this study represents that a well-structured π-cavity may generate a new series of molecular catalysts for the CO2 reduction reaction (CO2 RR), even with the inert metal complexes.
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Affiliation(s)
- Piyali Sarkar
- School of Chemical Sciences, Indian Association for the Cultivation of Science (IACS), Kolkata, 700032, India
- Institute of Health Sciences, Presidency University, Second Campus, Plot No. DG/02/02, Premises No. 14-0358, Action Area-ID, New Town, Kolkata, West Bengal, 700156, India
| | - Sayan Sarkar
- School of Chemical Sciences, Indian Association for the Cultivation of Science (IACS), Kolkata, 700032, India
| | - Abhijit Nayek
- School of Chemical Sciences, Indian Association for the Cultivation of Science (IACS), Kolkata, 700032, India
| | - Nayarassery N Adarsh
- Chemistry and Biomolecular Science, Clarkson University, 8 Clarkson Ave., Potsdam, NY, 13699, USA
| | - Arun K Pal
- School of Chemical Sciences, Indian Association for the Cultivation of Science (IACS), Kolkata, 700032, India
| | - Ayan Datta
- School of Chemical Sciences, Indian Association for the Cultivation of Science (IACS), Kolkata, 700032, India
| | - Abhishek Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science (IACS), Kolkata, 700032, India
| | - Pradyut Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science (IACS), Kolkata, 700032, India
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Nayek A, Dey S, Patra S, Rana A, Serrano PN, George SJ, Cramer SP, Ghosh Dey S, Dey A. Facile electrocatalytic proton reduction by a [Fe-Fe]-hydrogenase bio-inspired synthetic model bearing a terminal CN - ligand. Chem Sci 2024; 15:2167-2180. [PMID: 38332837 PMCID: PMC10848691 DOI: 10.1039/d3sc05397k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 12/22/2023] [Indexed: 02/10/2024] Open
Abstract
An azadithiolate bridged CN- bound pentacarbonyl bis-iron complex, mimicking the active site of [Fe-Fe] H2ase is synthesized. The geometric and electronic structure of this complex is elucidated using a combination of EXAFS analysis, infrared and Mössbauer spectroscopy and DFT calculations. The electrochemical investigations show that complex 1 effectively reduces H+ to H2 between pH 0-3 at diffusion-controlled rates (1011 M-1 s-1) i.e. 108 s-1 at pH 3 with an overpotential of 140 mV. Electrochemical analysis and DFT calculations suggests that a CN- ligand increases the pKa of the cluster enabling hydrogen production from its Fe(i)-Fe(0) state at pHs much higher and overpotential much lower than its precursor bis-iron hexacarbonyl model which is active in its Fe(0)-Fe(0) state. The formation of a terminal Fe-H species, evidenced by spectroelectrochemistry in organic solvent, via a rate determining proton coupled electron transfer step and protonation of the adjacent azadithiolate, lowers the kinetic barrier leading to diffusion controlled rates of H2 evolution. The stereo-electronic factors enhance its catalytic rate by 3 order of magnitude relative to a bis-iron hexacarbonyl precursor at the same pH and potential.
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Affiliation(s)
- Abhijit Nayek
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Subal Dey
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Suman Patra
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Atanu Rana
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Pauline N Serrano
- Department of Chemistry, University of California Davis CA 94616 USA
| | - Simon J George
- Department of Chemistry, University of California Davis CA 94616 USA
- SETI Institute 339 Bernardo Ave, Suite, 200 Mountain View CA 94043 USA
| | - Stephen P Cramer
- Department of Chemistry, University of California Davis CA 94616 USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory Berkeley CA 94720 USA
- SETI Institute 339 Bernardo Ave, Suite, 200 Mountain View CA 94043 USA
| | - Somdatta Ghosh Dey
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Abhishek Dey
- School of Chemical Science, Indian Association for the Cultivation of Science Kolkata 700032 India
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Chattopadhyay S, Samanta S, Sarkar A, Bhattacharya A, Patra S, Dey A. Silver nanostructure-modified graphite electrode for in-operando SERRS investigation of iron porphyrins during high-potential electrocatalysis. J Chem Phys 2023; 158:044201. [PMID: 36725507 DOI: 10.1063/5.0136333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
In-operando spectroscopic observation of the intermediates formed during various electrocatalytic oxidation and reduction reactions is crucial to propose the mechanism of the corresponding reaction. Surface-enhanced resonance Raman spectroscopy coupled to rotating disk electrochemistry (SERRS-RDE), developed about a decade ago, proved to be an excellent spectroscopic tool to investigate the mechanism of heterogeneous oxygen reduction reaction (ORR) catalyzed by synthetic iron porphyrin complexes under steady-state conditions in water. The information about the formation of the intermediates accumulated during the course of the reaction at the electrode interface helped to develop better ORR catalysts with second sphere residues in the porphyrin rings. To date, the application of this SERRS-RDE setup is limited to ORR only because the thiol self-assembled monolayer (SAM)-modified Ag electrode, used as the working electrode in these experiments, suffers from stability issues at more cathodic and anodic potential, where H2O oxidation, CO2 reduction, and H+ reduction reactions occur. The current investigation shows the development of a second-generation SERRS-RDE setup consisting of an Ag nanostructure (AgNS)-modified graphite electrode as the working electrode. These electrodes show higher stability (compared to the conventional thiol SAM-modified Ag electrode) upon exposure to very high cathodic and anodic potential with a good signal-to-noise ratio in the Raman spectra. The behavior of this modified electrode toward ORR is found to be the same as the SAM-modified Ag electrode, and the same ORR intermediates are observed during electrochemical ORR. At higher cathodic potential, the signatures of Fe(0) porphyrin, an important intermediate in H+ and CO2 reduction reactions, was observed at the electrode-water interface.
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Affiliation(s)
- Samir Chattopadhyay
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Soumya Samanta
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Ankita Sarkar
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Aishik Bhattacharya
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Suman Patra
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Abhishek Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
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Lukas J, Družeta I, Kühl T. Comparative studies of soluble and immobilized Fe(III) heme-peptide complexes as alternative heterogeneous biocatalysts. Biol Chem 2022; 403:1099-1105. [PMID: 36257922 DOI: 10.1515/hsz-2022-0199] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 10/06/2022] [Indexed: 11/15/2022]
Abstract
Fe(III) heme is known to possess low catalytic activity when exposed to hydrogen peroxide and a reducing substrate. Efficient non-covalently linked Fe(III) heme-peptide complexes may represent suitable alternatives as a new group of green catalysts. Here, we evaluated a set of heme-peptide complexes by determination of their peroxidase-like activity and the kinetics of the catalytic conversion in both, the soluble and the immobilized state. We show the impact of peptide length on binding of the peptides to Fe(III) heme and the catalytic activity. Immobilization of the peptide onto a polymer support maintains the catalytic performance of the Fe(III) heme-peptide complex. This study thus opens up a new perspective with regard to the development of heterogeneous biocatalysts with a peroxidase-like activity.
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Affiliation(s)
- Joey Lukas
- Pharmaceutical Biochemistry and Bioanalytics, Pharmaceutical Institute, University of Bonn, An der Immenburg 4, D-53121, Bonn, Germany
| | - Ivona Družeta
- Pharmaceutical Biochemistry and Bioanalytics, Pharmaceutical Institute, University of Bonn, An der Immenburg 4, D-53121, Bonn, Germany
| | - Toni Kühl
- Pharmaceutical Biochemistry and Bioanalytics, Pharmaceutical Institute, University of Bonn, An der Immenburg 4, D-53121, Bonn, Germany
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Ghatak A, Samanta S, Nayek A, Mukherjee S, Dey SG, Dey A. Second-Sphere Hydrogen-Bond Donors and Acceptors Affect the Rate and Selectivity of Electrochemical Oxygen Reduction by Iron Porphyrins Differently. Inorg Chem 2022; 61:12931-12947. [PMID: 35939766 DOI: 10.1021/acs.inorgchem.2c02170] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The factors that control the rate and selectivity of 4e-/4H+ O2 reduction are important for efficient energy transformation as well as for understanding the terminal step of respiration in aerobic organisms. Inspired by the design of naturally occurring enzymes which are efficient catalysts for O2 and H2O2 reduction, several artificial systems have been generated where different second-sphere residues have been installed to enhance the rate and efficiency of the 4e-/4H+ O2 reduction. These include hydrogen-bonding residues like amines, carboxylates, ethers, amides, phenols, etc. In some cases, improvements in the catalysis were recorded, whereas in some cases improvements were marginal or nonexistent. In this work, we use an iron porphyrin complex with pendant 1,10-phenanthroline residues which show a pH-dependent variation of the rate of the electrochemical O2 reduction reaction (ORR) over 2 orders of magnitude. In-situ surface-enhanced resonance Raman spectroscopy reveals the presence of different intermediates at different pH's reflecting different rate-determining steps at different pH's. These data in conjunction with density functional theory calculations reveal that when the distal 1,10-phenanthroline is neutral it acts as a hydrogen-bond acceptor which stabilizes H2O (product) binding to the active FeII state and retards the reaction. However, when the 1,10-phenanthroline is protonated, it acts as a hydrogen-bond donor which enhances O2 reduction by stabilizing FeIII-O2.- and FeIII-OOH intermediates and activating the O-O bond for cleavage. On the basis of these data, general guidelines for controlling the different possible rate-determining steps in the complex multistep 4e-/4H+ ORR are developed and a bioinspired principle-based design of an efficient electrochemical ORR is presented.
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Affiliation(s)
- Arnab Ghatak
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
| | - Soumya Samanta
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
| | - Abhijit Nayek
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
| | - Sudipta Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
| | - Somdatta Ghosh Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
| | - Abhishek Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, West Bengal 700032, India
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