1
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Thorpe MP, Blackwell DJ, Knollmann BC, Johnston JN. Backbone-Determined Antiarrhythmic Structure-Activity Relationships for a Mirror Image, Oligomeric Depsipeptide Natural Product. J Med Chem 2024; 67:12205-12220. [PMID: 38958200 DOI: 10.1021/acs.jmedchem.4c00923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/04/2024]
Abstract
Cyclic oligomeric depsipeptides (COD) are a structural class within naturally occurring compounds with a wide range of biological activity. Verticilide is a COD (24-membered ring) that was identified by its inhibition of insect ryanodine receptor (RyR). We have since found that the enantiomer of verticilide (ent-verticilide, 1) is a potent inhibitor of mammalian RyR2, a cardiac calcium channel, and therefore a potential antiarrhythmic agent. Oddly, nat-verticilide does not inhibit RyR2. To further develop ent-verticilide as an antiarrhythmic, we explored potential SAR through systematic modification of the ester's functionality to both N-H and N-Me amides. The syntheses of these ent-verticilide-inspired analogs are detailed using a monomer-based platform enabled by enantioselective catalysis. Two analogs among 23 exhibited measurable reduction of calcium sparks in a functional assay of RyR2 activity. These findings illustrate the value of natural product-inspired therapeutic development, but the less-studied approach where the non-natural enantiomeric series harbors important SAR.
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Affiliation(s)
- Madelaine P Thorpe
- Department of Chemistry and Vanderbilt Institute of Chemical Biology, Vanderbilt University, Nashville, Tennessee 37235, United States
| | - Daniel J Blackwell
- Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee 37235, United States
| | - Bjorn C Knollmann
- Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee 37235, United States
| | - Jeffrey N Johnston
- Department of Chemistry and Vanderbilt Institute of Chemical Biology, Vanderbilt University, Nashville, Tennessee 37235, United States
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2
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Zhang H, Xu N, Su B, Zhang J, Zhang C, Zhang Z, Guo B, Xu S, Wang S, Tang R. Synthesis of Amides via the Amination of Aldehydes with Hydroxylamines Promoted by TBAF·3H 2O. J Org Chem 2024. [PMID: 38781579 DOI: 10.1021/acs.joc.4c00246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
Abstract
A metal-free, mild, and efficient method for the synthesis of amides has been developed from the amination of aldehydes with hydroxylamines promoted by TBAF·3H2O in the presence of KOH. Control experiments showed that the nitrone was the intermediate of this amination. By this method, a series of amides, biologically active compounds bebenil and a COX inhibitor were obtained in moderate to good yields.
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Affiliation(s)
- Huaiyuan Zhang
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
| | - Nuo Xu
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
| | - Botao Su
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
| | - Jingren Zhang
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
| | - Chongen Zhang
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
| | - Zhiyuan Zhang
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
| | - Binbin Guo
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
| | - Shengjie Xu
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
| | - Shouwei Wang
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
| | - Rongping Tang
- School of Applied Chemical Engineering, Lanzhou Petrochemical University of Vocational Technology, No. 1 Shandan Street, Lanzhou 730060, P. R. China
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3
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Thakur DG, Rathod NB, Patel SD, Patel DM, Patel RN, Sonawane MA, Ghosh SC. Palladium-Catalyzed Chelation-Assisted Aldehyde C-H Bond Activation of Quinoline-8-carbaldehydes: Synthesis of Amides from Aldehydes with Anilines and Other Amines. J Org Chem 2024. [PMID: 38195393 DOI: 10.1021/acs.joc.3c02139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2024]
Abstract
A palladium-catalyzed chelation-assisted direct aldehyde C-H bond amidation of quinoline-8-carbaldehydes with an amine was developed under mild reaction conditions. A wide range of amides were obtained in good to excellent yields from aldehyde with a variety of aniline derivatives and aliphatic amines. Our methodology was successfully applied to synthesize known DNA intercalating agents and can be easily scaled up to a gram scale.
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Affiliation(s)
- Dinesh Gopichand Thakur
- Natural Products and Green Chemistry Division, Central Salt and Marine Chemicals Research Institute (CSIR), G. B. Marg, Bhavnagar , Gujarat 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Nileshkumar B Rathod
- Natural Products and Green Chemistry Division, Central Salt and Marine Chemicals Research Institute (CSIR), G. B. Marg, Bhavnagar , Gujarat 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Sachinkumar D Patel
- Natural Products and Green Chemistry Division, Central Salt and Marine Chemicals Research Institute (CSIR), G. B. Marg, Bhavnagar , Gujarat 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Dharmik M Patel
- Natural Products and Green Chemistry Division, Central Salt and Marine Chemicals Research Institute (CSIR), G. B. Marg, Bhavnagar , Gujarat 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Raj N Patel
- Natural Products and Green Chemistry Division, Central Salt and Marine Chemicals Research Institute (CSIR), G. B. Marg, Bhavnagar , Gujarat 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Mahesh A Sonawane
- Natural Products and Green Chemistry Division, Central Salt and Marine Chemicals Research Institute (CSIR), G. B. Marg, Bhavnagar , Gujarat 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Subhash Chandra Ghosh
- Natural Products and Green Chemistry Division, Central Salt and Marine Chemicals Research Institute (CSIR), G. B. Marg, Bhavnagar , Gujarat 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
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4
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Wang X, Xu S, Tang Y, Lear MJ, He W, Li J. Nitroalkanes as thioacyl equivalents to access thioamides and thiopeptides. Nat Commun 2023; 14:4626. [PMID: 37532721 PMCID: PMC10397191 DOI: 10.1038/s41467-023-40334-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 07/20/2023] [Indexed: 08/04/2023] Open
Abstract
Thioamides are an important, but a largely underexplored class of amide bioisostere in peptides. Replacement of oxoamide units with thioamides in peptide therapeutics is a valuable tactic to improve biological activity and resistance to enzymatic hydrolysis. This tactic, however, has been hampered by insufficient methods to introduce thioamide bonds into peptide or protein backbones in a site-specific and stereo-retentive fashion. In this work, we developed an efficient and mild thioacylation method to react nitroalkanes with amines directly in the presence of elemental sulfur and sodium sulfide to form a diverse range of thioamides in high yields. Notably, this convenient method can be employed for the controlled thioamide coupling of multifunctionalized peptides without epimerization of stereocenters, including the late stage thioacylation of advanced compounds of biological and medicinal interest. Experimental interrogation of postulated mechanisms currently supports the intermediacy of thioacyl species.
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Affiliation(s)
- Xiaonan Wang
- School of Chemistry, and Xi'an Key Laboratory of Sustainable Energy Materials Chemistry, Xi'an Jiaotong University, 710049, Xi'an, China
| | - Silong Xu
- School of Chemistry, and Xi'an Key Laboratory of Sustainable Energy Materials Chemistry, Xi'an Jiaotong University, 710049, Xi'an, China
| | - Yuhai Tang
- School of Chemistry, and Xi'an Key Laboratory of Sustainable Energy Materials Chemistry, Xi'an Jiaotong University, 710049, Xi'an, China
| | - Martin J Lear
- School of Chemistry, University of Lincoln, Brayford Pool, Lincoln, LN6 7TS, UK
| | - Wangxiao He
- The First Affiliated Hospital of Xi'an Jiao Tong University, 710061, Xi'an, China
| | - Jing Li
- School of Chemistry, and Xi'an Key Laboratory of Sustainable Energy Materials Chemistry, Xi'an Jiaotong University, 710049, Xi'an, China.
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Wang Y, Wu XF. Palladium-catalyzed dicarbonylation of terminal alkynes: A redox-neutral strategy for the synthesis of maleimides. J Catal 2023. [DOI: 10.1016/j.jcat.2023.03.034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
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6
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Li X, Lu B, Jiang J, Wang L, Trabelsi T, Francisco JS, Fang W, Zhou M, Zeng X. Water Complex of Imidogen. J Am Chem Soc 2023; 145:1982-1987. [PMID: 36633923 DOI: 10.1021/jacs.2c12808] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Imidogen (NH) is the simplest nitrogen hydride that plays an important role in combustion and interstellar chemistry, and its combination with H2O is the prototypical amidation reaction of O-H bonds involving a nitrene intermediate. Herein, we report the observation of the elusive water complex of NH, a prereaction complex associated with the amidation reaction in a solid N2 matrix at 10 K. The hydrogen-bonded structure of NH···OH2 (versus HN···HOH) is confirmed via IR spectroscopy with comprehensive isotope labeling (D, 18O, and 15N) and quantum chemical calculations at the UCCSD(T)/aug-cc-pVQZ level of theory. In line with the observed absorption at 350 nm, irradiation of the complex at 365 nm leads to O-H bond insertion, yielding hydroxylamine NH2OH.
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Affiliation(s)
- Xiaolong Li
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, 200433 Shanghai, China
| | - Bo Lu
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, 200433 Shanghai, China
| | - Junjie Jiang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, 200433 Shanghai, China
| | - Lina Wang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, 200433 Shanghai, China
| | - Tarek Trabelsi
- Department of Earth and Environment Science, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6243, United States
| | - Joseph S Francisco
- Department of Earth and Environment Science, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6243, United States
| | - Wei Fang
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, 200433 Shanghai, China
| | - Mingfei Zhou
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, 200433 Shanghai, China
| | - Xiaoqing Zeng
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University, 200433 Shanghai, China
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7
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Li Q, Zhang W, Zhu C, Pan H, Shi KY, Zhang Y, Han MY, Tan CH. Organobase-Catalyzed Umpolung of Amides: The Generation and Transfer of Carbamoyl Anion. J Org Chem 2023; 88:1245-1255. [PMID: 36628963 DOI: 10.1021/acs.joc.2c02487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
A novel organobase-catalyzed umpolung reaction of amides was disclosed. This method provides an efficient method to generate and transfer carbamoyl anions. In this transformation, some of the inherent disadvantages of carbamoyl metal were avoided. The mechanistic analysis revealed that the reaction proceeds through polarity inversion of amide, and various carbamoyl anions were applied in the reaction. Moreover, a wide range of substrates was achieved with moderate to excellent yield.
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Affiliation(s)
- Qi Li
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, College of Chemistry and Materials Science, Huabei Normal University, Huaibei, Anhui 235000, PR China
| | - Wang Zhang
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, College of Chemistry and Materials Science, Huabei Normal University, Huaibei, Anhui 235000, PR China
| | - Chen Zhu
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, College of Chemistry and Materials Science, Huabei Normal University, Huaibei, Anhui 235000, PR China
| | - Hong Pan
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, College of Chemistry and Materials Science, Huabei Normal University, Huaibei, Anhui 235000, PR China
| | - Kang-Yue Shi
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, College of Chemistry and Materials Science, Huabei Normal University, Huaibei, Anhui 235000, PR China
| | - Yicheng Zhang
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, College of Chemistry and Materials Science, Huabei Normal University, Huaibei, Anhui 235000, PR China
| | - Man-Yi Han
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, College of Chemistry and Materials Science, Huabei Normal University, Huaibei, Anhui 235000, PR China
| | - Choon-Hong Tan
- Division of Chemistry and Biological Chemistry, Nanyang Technological University, Singapore 637371
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8
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Patra T, Wirth T. Oxidative Cleavage of Alkenes by Photosensitized Nitroarenes. Angew Chem Int Ed Engl 2022; 61:e202213772. [DOI: 10.1002/anie.202213772] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2022] [Indexed: 11/16/2022]
Affiliation(s)
- Tuhin Patra
- School of Chemistry Cardiff University Main Building, Park Place Cardiff CF10 3AT UK
| | - Thomas Wirth
- School of Chemistry Cardiff University Main Building, Park Place Cardiff CF10 3AT UK
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