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Stindt C, Jo T, Steen JD, Feringa BL, Crespi S. Computational Study on the Dynamics of a Bis(benzoxazole)-Based Overcrowded Alkene. J Phys Chem A 2025; 129:1301-1309. [PMID: 39847760 PMCID: PMC11808780 DOI: 10.1021/acs.jpca.4c06773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2024] [Revised: 01/08/2025] [Accepted: 01/10/2025] [Indexed: 01/25/2025]
Abstract
Understanding and controlling molecular motions is of pivotal importance for designing molecular machinery and functional molecular systems, capable of performing complex tasks. Herein, we report a comprehensive theoretical study to elucidate the dynamic behavior of a bis(benzoxazole)-based overcrowded alkene displaying several coupled and uncoupled molecular motions. The benzoxazole moieties give rise to 4 different stable conformers that interconvert through single-bond rotations. By performing excited- and ground-state molecular dynamics simulations, DFT calculations, and NMR studies, we found that the photochemical E-Z isomerization of the central double bond of each stable conformer is directional and leads to a mixture of metastable isomers. This transformation is analogous to the classical Feringa-type molecular motors, with the notable difference that, during the photochemical isomerization and the subsequent thermal helix inversion (THI) steps, multiple possible pathways take place that involve single-bond rotations that can be both coupled and uncoupled to the rotation of the naphthyl half of the molecule.
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Affiliation(s)
- Charlotte
N. Stindt
- Stratingh
Institute for Chemistry, University of Groningen, Nijenborgh 4, Groningen 9747 AG, the
Netherlands
| | - Taegeun Jo
- Department
of Chemistry - Ångström Laboratory, Uppsala University, Box 523, Uppsala 751 20, Sweden
| | - Jorn D. Steen
- Department
of Chemistry - Ångström Laboratory, Uppsala University, Box 523, Uppsala 751 20, Sweden
| | - Ben L. Feringa
- Stratingh
Institute for Chemistry, University of Groningen, Nijenborgh 4, Groningen 9747 AG, the
Netherlands
| | - Stefano Crespi
- Department
of Chemistry - Ångström Laboratory, Uppsala University, Box 523, Uppsala 751 20, Sweden
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Gisbert Y, Ovalle M, Stindt CN, Costil R, Feringa BL. Coupling Rotary Motion to Helicene Inversion within a Molecular Motor. Angew Chem Int Ed Engl 2025; 64:e202416097. [PMID: 39526696 PMCID: PMC11753609 DOI: 10.1002/anie.202416097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2024] [Revised: 10/21/2024] [Accepted: 11/09/2024] [Indexed: 11/16/2024]
Abstract
Towards complex coupled molecular motions, the remote handedness inversion of a helicene moiety was achieved by a rotary molecular motor. The use of a specifically engineered dynamic helicene stator in a novel overcrowded-alkene second-generation molecular motor based on a fluorinated dibenzofluorene fragment allows for an unprecedented control over helicity inversion. This is achieved by the mechanical coupling of the rotation of the rotor to the helicene inversion of the stator half via a remote chirality transmission process. Thus, the unidirectional rotary motion generated upon irradiation is used to invert the dynamic stereochemistry of a helicene, leading to a 6-step cycle with eight intermediates. In this cycle, both alternation between P and M configurations of the helicene stator and dynamic thermal interconversion (paddling motion) can be achieved. In-depth computational and spectroscopic studies were performed to support the associated mechanism. The control over coupled motion and dynamic helicity offers prospects for the development of complex responsive systems.
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Affiliation(s)
- Yohan Gisbert
- Stratingh Institute for ChemistryUniversity of GroningenNijenborgh 39747 AGGroningen, TheNetherlands
| | - Marco Ovalle
- Stratingh Institute for ChemistryUniversity of GroningenNijenborgh 39747 AGGroningen, TheNetherlands
| | - Charlotte N. Stindt
- Stratingh Institute for ChemistryUniversity of GroningenNijenborgh 39747 AGGroningen, TheNetherlands
| | - Romain Costil
- Stratingh Institute for ChemistryUniversity of GroningenNijenborgh 39747 AGGroningen, TheNetherlands
| | - Ben L. Feringa
- Stratingh Institute for ChemistryUniversity of GroningenNijenborgh 39747 AGGroningen, TheNetherlands
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3
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Pang X, Zhao K, Hu D, Zhong Q, Zhang N, Jiang C. Effect of load-resisting force on photoisomerization mechanism of a single second generation light-driven molecular rotary motor. J Chem Phys 2024; 161:164302. [PMID: 39435841 DOI: 10.1063/5.0216074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2024] [Accepted: 09/30/2024] [Indexed: 10/23/2024] Open
Abstract
A pivotal aspect of molecular motors is their capability to generate load capacity from a single entity. However, few studies have directly characterized the load-resisting force of a single light-driven molecular motor. This research provides a simulation analysis of the load-resisting force for a highly efficient, second-generation molecular motor developed by Feringa et al. We investigate the M-to-P photoinduced nonadiabatic molecular dynamics of 9-(2,3-dihydro-2-methyl-1H-benz[e]inden-1-ylidene)-9H-fluorene utilizing Tully's surface hopping method at the semi-empirical OM2/MRCI level under varying load-resisting forces. The findings indicate that the quantum yield remains relatively stable under forces up to 0.003 a.u., with the photoisomerization mechanism functioning typically. Beyond this threshold, the quantum yield declines, and an alternative photoisomerization mechanism emerges, characterized by an inversion of the central double bond's twisting direction. The photoisomerization process stalls when the force attains a critical value of 0.012 a.u. Moreover, the average lifetime of the excited state oscillates around that of the unperturbed system. The quantum yield and mean lifetime of the S1 excited state in the absence of external force are recorded at 0.54 and 877.9 fs, respectively. In addition, we analyze a time-dependent fluorescence radiation spectrum, confirming the presence of a dark state and significant vibrations, as previously observed experimentally by Conyard et al.
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Affiliation(s)
- Xiaojuan Pang
- School of Materials and Physics, China University of Mining and Technology, Xuzhou, Jiangsu 221116, People's Republic of China
| | - Kaiyue Zhao
- School of Materials and Physics, China University of Mining and Technology, Xuzhou, Jiangsu 221116, People's Republic of China
| | - Deping Hu
- Center for Advanced Materials Research, Beijing Normal University, Zhuhai 519087, People's Republic of China
| | - Quanjie Zhong
- School of Materials and Physics, China University of Mining and Technology, Xuzhou, Jiangsu 221116, People's Republic of China
| | - Ningbo Zhang
- School of Mines, China University of Mining and Technology, Xuzhou, Jiangsu 221116, People's Republic of China
| | - Chenwei Jiang
- Ministry of Education Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, Shaanxi Province Key Laboratory of Quantum Information and Quantum Optoelectronic Devices, School of Physics, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, People's Republic of China
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4
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Xiao H, Hu WY, Wang Q, Zeng CH, Li HH, Liu H, Du ZY, He CT. Molecular rotators anchored on a rod-like anionic coordination polymer adhered by charge-assisted hydrogen bonds. Phys Chem Chem Phys 2024; 26:3974-3980. [PMID: 38221866 DOI: 10.1039/d3cp05597c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2024]
Abstract
On the basis of variable-temperature single-crystal X-ray diffraction, variable-temperature/frequency dielectric analysis, variable-temperature solid-state nuclear magnetic resonance spectroscopy, and molecular dynamics simulations, here we present a new model of crystalline supramolecular rotor (i-PrNHMe2)[CdBr3], where a conformationally flexible near-spherical (i-PrNHMe2)+ cation functions as a rotator and a rod-like anionic coordination polymer {[CdBr3]-}∞ acts as the stator, and the adhesion of them is realized by charge-assisted hydrogen bonds.
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Affiliation(s)
- Hui Xiao
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang 330022, China.
| | - Wei-Yu Hu
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang 330022, China.
| | - Qing Wang
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
| | - Cheng-Hui Zeng
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang 330022, China.
| | - Hao-Hong Li
- College of Chemistry, Fuzhou University, Fuzhou 350108, China
| | - Haiming Liu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
| | - Zi-Yi Du
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang 330022, China.
| | - Chun-Ting He
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang 330022, China.
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Guo J, Zhang SY, Zeng CH, Zhou ZG, Xie M, Du ZY, He CT, Zhang WX, Chen XM. Temperature-Tuned Variable Confined Space for Modulating Dipolar Polarization of a Disc-Shaped Ammonium Ion. J Phys Chem Lett 2023; 14:8009-8015. [PMID: 37651131 DOI: 10.1021/acs.jpclett.3c01961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
Free accessible confined space and loose interaction are crucial for most solid-state ionic motions. Here, by using a near-spherical anion and a disc-shaped ammonium as two distinct but rigid building blocks, we report a new ionic crystal, (HMIm)3[La(NO3)6] (HMIm = 1-methyl-1H-imidazol-3-ium), in which the different confined spaces of three (HMIm)+ ions are fine-tuned over a broad temperature range. This effect can be utilized to modulate the dipolar polarization across a wide temperature/frequency range. Additionally, small-scale substitution of (HMIm)+ by its isomer of almost identical shape/size affords molecular solid solutions, which can further tune the dipolar polarization by varying the doping ratio. It is revealed that the differences in dipole moment and hydrogen bond rather than that of shape/size lead to a distorted crystalline environment for these solid solutions. Overall, we provide an exceptional model for understanding and regulating the dipole motion of polar aromatic molecules/ions in a crystalline environment.
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Affiliation(s)
- Jing Guo
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, Jiangxi 330022, China
| | - Shi-Yong Zhang
- College of Chemistry and Chemical Engineering, Gannan Normal University, Ganzhou, Jiangxi 341000, China
| | - Cheng-Hui Zeng
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, Jiangxi 330022, China
| | - Zhong-Gao Zhou
- College of Chemistry and Chemical Engineering, Gannan Normal University, Ganzhou, Jiangxi 341000, China
| | - Miao Xie
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, Jiangxi 330022, China
| | - Zi-Yi Du
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, Jiangxi 330022, China
| | - Chun-Ting He
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, Jiangxi 330022, China
| | - Wei-Xiong Zhang
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, IGCME, Sun Yat-Sen University, Guangzhou, Guangdong 510275, China
| | - Xiao-Ming Chen
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, IGCME, Sun Yat-Sen University, Guangzhou, Guangdong 510275, China
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