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Kummetha LR, Oh JJ, van der Linden FH, Aubin-Tam ME. Leveraging the versatile properties of bacterial spores in materials. Trends Biotechnol 2025; 43:812-825. [PMID: 39472253 DOI: 10.1016/j.tibtech.2024.09.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Revised: 09/13/2024] [Accepted: 09/26/2024] [Indexed: 04/05/2025]
Abstract
Inspired by biological functions of living systems, researchers have engineered cells as independent functional materials or integrated them within a natural or synthetic matrix to create engineered living materials (ELMs). However, the 'livingness' of cells in such materials poses serious drawbacks, such as a short lifespan and the need for cold-chain logistics. Bacterial spores have emerged as a game changer to bypass these shortcomings as a result of their intrinsic dormancy and resistance against harsh conditions. Emerging synthetic biology tools tailored for engineering spores and better understanding of their physical properties have led to novel applications of spore-based materials. Here, we review recent advances in such materials and discuss future challenges for the development of time- and cost-efficient spore-based materials with high performance.
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Affiliation(s)
- Likhitha Reddy Kummetha
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, Delft 2629, HZ, the Netherlands
| | - Jeong-Joo Oh
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, Delft 2629, HZ, the Netherlands.
| | - Franka H van der Linden
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, Delft 2629, HZ, the Netherlands
| | - Marie-Eve Aubin-Tam
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Van der Maasweg 9, Delft 2629, HZ, the Netherlands.
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Bautista E, Estrada E, Deyell J, Sun M, Spada ARL, Sim S. Antibacterial Polymers Based on Two Orthogonal Binding Motifs Coalesce with Bacterial Matter. ACS APPLIED BIO MATERIALS 2025; 8:2377-2385. [PMID: 39977622 PMCID: PMC11927954 DOI: 10.1021/acsabm.4c01872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2025]
Abstract
Addressing the growing concern about antibiotic-resistant bacteria, we have developed a series of polymers exhibiting intrinsic antibacterial activities with a dual-targeting system that induces physical lysis upon copolymer coalescence with bacterial matter. These polymers are equipped with two orthogonal binding motifs that form electrostatic interactions and dynamic covalent complexes on bacterial surfaces and exhibit potent antibacterial activity against Gram-positive and Gram-negative bacteria. The effect of the chemical composition and architecture of copolymers incorporating phenylboronic acid and quaternary ammonium groups on the antimicrobial activities was systematically examined. This work expands the current chemical repertoire to combat antimicrobial resistance by intrinsically antibacterial polymers with a unique mode of action.
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Affiliation(s)
- Esteban Bautista
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
| | - Eduardo Estrada
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
| | - Jacob Deyell
- Department of Pathology & Laboratory Medicine, University of California Irvine, Irvine, California 92697, United States
- Department of Neurology, University of California Irvine, Irvine, California 92697, United States
- Department of Biological Chemistry, University of California Irvine, Irvine, California 92697, United States
- Department of Neurobiology & Behavior, University of California Irvine, Irvine, California 92697, United States
- UCI Center for Neurotherapeutics, University of California Irvine, Irvine, CA 92697, United States
| | - Melody Sun
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
| | - Albert R. La Spada
- Department of Pathology & Laboratory Medicine, University of California Irvine, Irvine, California 92697, United States
- Department of Neurology, University of California Irvine, Irvine, California 92697, United States
- Department of Biological Chemistry, University of California Irvine, Irvine, California 92697, United States
- Department of Neurobiology & Behavior, University of California Irvine, Irvine, California 92697, United States
- UCI Center for Neurotherapeutics, University of California Irvine, Irvine, CA 92697, United States
| | - Seunghyun Sim
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
- Department of Chemical and Biomolecular Engineering, University of California Irvine, Irvine, California 92697, United States
- Department of Biomedical Engineering, University of California Irvine, Irvine, California 92697, United States
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Wang G, Wang Y, Wang L, Wu S, Cao A, Pu W, Li T, Xie R, Wang H, Ding L, Ju H. Stressor-Actuated Proximity Labeling for Reporting Cellular Interaction. Anal Chem 2024; 96:20065-20073. [PMID: 39621845 DOI: 10.1021/acs.analchem.4c05008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2024]
Abstract
Cell-cell interactions determine the activation state and function of cells. When host cells are exposed to stressors such as microorganisms, immune defense machinery is activated to release H2O2, providing direct evidence of the relevant cellular physiological processes. Inspired by the fact that peroxidase can catalyze proximity labeling in the presence of exogenous H2O2, a stressor-actuated proximity labeling (SAPL) strategy is developed to report the process information on cell-cell interactions by recording stress levels. The stressors are covalently modified with horseradish peroxidase (HRP) and the H2O2 released by the host cells in response to the stressors triggers HRP-based proximity labeling. Using a fungal mimic or live fungi as stressors, the stress levels of different host cells are compared by in situ imaging of the labeling signals. The ability to accumulate stress signals allows SAPL to more sensitively differentiate between interactions involving different macrophage phenotypes. SAPL is also a powerful tool for real-time, in situ monitoring of the effects of surface modifications on cellular interactions. Thus, the SAPL strategy represents a new perspective in the monitoring of cell-cell interactions using endogenous effector molecules.
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Affiliation(s)
- Guyu Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Yichun Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Lan Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Shijie Wu
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Ao Cao
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Wenyuan Pu
- Jiangsu Key Laboratory of Molecular Medicine, Medical School, Nanjing University, Nanjing 210093, China
| | - Tielei Li
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- Department of Polymer Science & Engineering, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Ran Xie
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing 210023, China
| | - Hongwei Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- Jiangsu Key Laboratory of Molecular Medicine, Medical School, Nanjing University, Nanjing 210093, China
| | - Lin Ding
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing 210023, China
| | - Huangxian Ju
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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Korbanka L, Kim JA, Sim S. Macroscopic Assembly of Materials with Engineered Bacterial Spores via Coiled-Coil Interaction. ACS Synth Biol 2024; 13:3668-3676. [PMID: 39393788 PMCID: PMC11856349 DOI: 10.1021/acssynbio.4c00468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/13/2024]
Abstract
Herein, we report macroscopic materials formed by the assembly of engineered bacterial spores. Spores were engineered by using a T7-driven expression system to display a high density of pH-responsive self-associating proteins on their surface. The engineered surface protein on the spore surface enabled pH-dependent binding at the protein level and enabled the assembly of granular materials. Mechanical properties remained largely constant with changing pH, but erosion stability was pH-dependent in a manner consistent with the pH-dependent interaction between the engineered surface proteins. Our finding utilizes synthetic biology for the design of macroscopic materials and illuminates the impact of coiled-coil interaction across various length scales.
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Affiliation(s)
- Lucas Korbanka
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
| | - Ju-An Kim
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
| | - Seunghyun Sim
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
- Department of Chemical and Biomolecular Engineering, University of California Irvine, Irvine, California 92697, United States
- Department of Biomedical Engineering, University of California Irvine, Irvine, California 92697, United States
- Center for Synthetic Biology, University of California, Irvine, Irvine, California 92697, United States
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Lin P, Wu W, Chen C, Chen Y, Ouyang S, Song Z, Xia Y, An Y, Zhang N, Zhao P, Lin B, Tao J. Walking Dead Macrophage-Based Positive Enhancement MRI for Ultrahighly Efficient Diagnosis of Nephritis. Anal Chem 2024; 96:4933-4941. [PMID: 38483253 DOI: 10.1021/acs.analchem.3c05777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
Nephritis is an inflammatory condition of the glomerulus, and the clinical gold standard for its diagnosis is a kidney biopsy. However, obtaining biopsy results can take several days, which does not meet the requirement of rapid diagnosis, especially for rapidly progressive types. To achieve an effective and noninvasive diagnosis, we propose a nephritis-specific, positive magnetic resonance imaging (MRI) contrast agent based on Gd3+ anchored walking dead macrophage Gd-RAW. Gd-RAW exhibits high selectivity for inflammatory renal parenchyma and provides comparable results to histopathology methods. The Gd-RAW-based MRI contrast agent reduces the diagnostic time of nephritis from 14 days of biopsy to 1 h. Furthermore, in a unilateral nephritis model constructed by increasing the glycerol concentration, the T1WI of renal parenchyma exhibits an increased signal-to-noise ratio, which is crucial for evaluating nephritic severity. This work promotes rapid diagnosis of nephritis and potentially provides sufficient evidence for clinicians to offer timely treatment to patients. The methodology of paramagnetic ion-anchored macrophage corpse also opens up new prospects for designing more specific and biosafe MRI contrast agents.
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Affiliation(s)
- Peiru Lin
- NMPA Key Laboratory for Research and Evaluation of Drug Metabolism, Provincial Key Laboratory of Cardiac Function and Microcirculation, Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Sciences, Southern Medical University, 510515 Guangzhou, China
| | - Wanjia Wu
- Department of Medical Imaging Center, Nanfang Hospital, Southern Medical University, 510515 Guangzhou, China
| | - Chuyao Chen
- Department of Medical Imaging Center, Nanfang Hospital, Southern Medical University, 510515 Guangzhou, China
| | - Yuying Chen
- School of Chemistry and Chemical Engineering, South China University of Technology, 510640 Guangzhou, China
| | - Sixue Ouyang
- School of Chemistry and Chemical Engineering, South China University of Technology, 510640 Guangzhou, China
| | - Zibin Song
- Department of Neurosurgery, Southern Medical University Nanfang Hospital, 510515 Guangzhou, China
| | - Yubin Xia
- Department of Nephrology, The First Affiliated Hospital of Shantou University Medical College, 515100 Shantou, China
| | - Yida An
- NMPA Key Laboratory for Research and Evaluation of Drug Metabolism, Provincial Key Laboratory of Cardiac Function and Microcirculation, Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Sciences, Southern Medical University, 510515 Guangzhou, China
| | - Nan Zhang
- Guangzhou National Laboratory, 510005 Guangzhou, China
| | - Peng Zhao
- NMPA Key Laboratory for Research and Evaluation of Drug Metabolism, Provincial Key Laboratory of Cardiac Function and Microcirculation, Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Sciences, Southern Medical University, 510515 Guangzhou, China
| | - Bingquan Lin
- Department of Medical Imaging Center, Nanfang Hospital, Southern Medical University, 510515 Guangzhou, China
| | - Jia Tao
- School of Chemistry and Chemical Engineering, South China University of Technology, 510640 Guangzhou, China
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