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For: Chao FA, Byrd RA. Geometric Approximation: A New Computational Approach To Characterize Protein Dynamics from NMR Adiabatic Relaxation Dispersion Experiments. J Am Chem Soc 2016;138:7337-45. [PMID: 27225523 DOI: 10.1021/jacs.6b02786] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Number Cited by Other Article(s)
1
Sorce DJ, Michaeli S. On the geometric phase effects on time evolution of the density matrix during modulated radiofrequency pulses. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2025;372:107840. [PMID: 39854908 PMCID: PMC11870322 DOI: 10.1016/j.jmr.2025.107840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2024] [Revised: 01/10/2025] [Accepted: 01/15/2025] [Indexed: 01/27/2025]
2
Michaeli S. Complete solution for rotating frame relaxation functions during adiabatic pulses. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2025;370:107809. [PMID: 39643963 PMCID: PMC11725442 DOI: 10.1016/j.jmr.2024.107809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Revised: 11/15/2024] [Accepted: 11/20/2024] [Indexed: 12/09/2024]
3
Parvez F, Amin Z, Sangpal D, Chugh J. Role of pH in Modulating RNA-Protein Interactions in TRBP2-dsRBD2: An Interplay between Conformational Dynamics and Electrostatic Interactions. J Phys Chem B 2024;128:12698-12709. [PMID: 39722586 DOI: 10.1021/acs.jpcb.4c04299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2024]
4
Chao FA, Byrd RA. Existence of Singularities in NMR Relaxation Dispersion Profiles: Implications for Hidden Dynamics. J Am Chem Soc 2024;146:24467-24475. [PMID: 39172084 DOI: 10.1021/jacs.4c06720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/23/2024]
5
Parvez F, Sangpal D, Paithankar H, Amin Z, Chugh J. Differential conformational dynamics in two type-A RNA-binding domains drive the double-stranded RNA recognition and binding. eLife 2024;13:RP94842. [PMID: 39116184 PMCID: PMC11309768 DOI: 10.7554/elife.94842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2024]  Open
6
Boucher MC, Sun P, Keresztes I, Harrell LE, Marohn JA. The Landau-Zener-Stückelberg-Majorana transition in the T2 ≪ T1 limit. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2023;354:107523. [PMID: 37625202 PMCID: PMC11382182 DOI: 10.1016/j.jmr.2023.107523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 07/08/2023] [Accepted: 07/09/2023] [Indexed: 08/27/2023]
7
Sorce DJ, Michaeli S. On the geometric phases during radio frequency pulses with sine and cosine amplitude and frequency modulation. AIP ADVANCES 2023;13:085210. [PMID: 37584043 PMCID: PMC10424156 DOI: 10.1063/5.0138779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 07/10/2023] [Indexed: 08/17/2023]
8
Karunanithy G, Yuwen T, Kay LE, Hansen DF. Towards autonomous analysis of chemical exchange saturation transfer experiments using deep neural networks. JOURNAL OF BIOMOLECULAR NMR 2022;76:75-86. [PMID: 35622310 PMCID: PMC9246985 DOI: 10.1007/s10858-022-00395-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Accepted: 05/05/2022] [Indexed: 06/12/2023]
9
Paithankar H, Tarang GS, Parvez F, Marathe A, Joshi M, Chugh J. Inherent conformational plasticity in dsRBDs enables interaction with topologically distinct RNAs. Biophys J 2022;121:1038-1055. [PMID: 35134335 PMCID: PMC8943759 DOI: 10.1016/j.bpj.2022.02.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2021] [Revised: 12/25/2021] [Accepted: 02/03/2022] [Indexed: 11/02/2022]  Open
10
Verstraete JB, Foroozandeh M. Improved design of frequency-swept pulse sequences. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2022;336:107146. [PMID: 35144158 DOI: 10.1016/j.jmr.2022.107146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2021] [Revised: 01/11/2022] [Accepted: 01/12/2022] [Indexed: 06/14/2023]
11
Chen Y, Jiang X, Wang J, Wu Z, Wu Y, Ni Z, Yi H, Lu R. Sensitive Oxidation of Sorbitol-Mediated Fe2+ by H2O2: A Reliable TD-NMR Method for Clinical Blood Glucose Detection. Anal Chem 2021;93:14153-14160. [PMID: 34637275 DOI: 10.1021/acs.analchem.1c02616] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
12
Picard LP, Prosser RS. Advances in the study of GPCRs by 19F NMR. Curr Opin Struct Biol 2021;69:169-176. [PMID: 34130235 DOI: 10.1016/j.sbi.2021.05.001] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 04/18/2021] [Accepted: 05/10/2021] [Indexed: 02/07/2023]
13
Khago D, Fucci IJ, Byrd RA. The Role of Conformational Dynamics in the Recognition and Regulation of Ubiquitination. Molecules 2020;25:E5933. [PMID: 33333809 PMCID: PMC7765195 DOI: 10.3390/molecules25245933] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 12/07/2020] [Accepted: 12/09/2020] [Indexed: 11/23/2022]  Open
14
Chao FA, Khago D, Byrd RA. Achieving pure spin effects by artifact suppression in methyl adiabatic relaxation experiments. JOURNAL OF BIOMOLECULAR NMR 2020;74:223-228. [PMID: 32333192 PMCID: PMC7430055 DOI: 10.1007/s10858-020-00312-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Accepted: 04/08/2020] [Indexed: 06/04/2023]
15
Protein Dynamics revealed by NMR Relaxation Methods. Emerg Top Life Sci 2020;2:93-105. [PMID: 33241122 DOI: 10.1042/etls20170139] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
16
Schanda P. Relaxing with liquids and solids - A perspective on biomolecular dynamics. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2019;306:180-186. [PMID: 31350165 PMCID: PMC7302934 DOI: 10.1016/j.jmr.2019.07.025] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2019] [Revised: 05/05/2019] [Accepted: 07/08/2019] [Indexed: 05/05/2023]
17
Chao FA, Li Y, Zhang Y, Byrd RA. Probing the Broad Time Scale and Heterogeneous Conformational Dynamics in the Catalytic Core of the Arf-GAP ASAP1 via Methyl Adiabatic Relaxation Dispersion. J Am Chem Soc 2019;141:11881-11891. [PMID: 31293161 PMCID: PMC7505415 DOI: 10.1021/jacs.9b02602] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
18
Di Pietrantonio C, Pandey A, Gould J, Hasabnis A, Prosser RS. Understanding Protein Function Through an Ensemble Description: Characterization of Functional States by 19F NMR. Methods Enzymol 2019;615:103-130. [DOI: 10.1016/bs.mie.2018.09.029] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
19
Palmer AG, Koss H. Chemical Exchange. Methods Enzymol 2018;615:177-236. [PMID: 30638530 DOI: 10.1016/bs.mie.2018.09.028] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
20
Conformational Dynamics and Allostery in E2:E3 Interactions Drive Ubiquitination: gp78 and Ube2g2. Structure 2017;25:794-805.e5. [PMID: 28434917 DOI: 10.1016/j.str.2017.03.016] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2016] [Revised: 01/23/2017] [Accepted: 03/24/2017] [Indexed: 12/30/2022]
21
Chao FA, Byrd RA. Application of geometric approximation to the CPMG experiment: Two- and three-site exchange. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2017;277:8-14. [PMID: 28189995 PMCID: PMC5405725 DOI: 10.1016/j.jmr.2017.01.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2016] [Revised: 01/26/2017] [Accepted: 01/29/2017] [Indexed: 06/06/2023]
22
Koss H, Rance M, Palmer AG. General expressions for R1ρ relaxation for N-site chemical exchange and the special case of linear chains. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2017;274:36-45. [PMID: 27866072 PMCID: PMC5199238 DOI: 10.1016/j.jmr.2016.10.015] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2016] [Revised: 10/21/2016] [Accepted: 10/25/2016] [Indexed: 05/07/2023]
23
Olsson S, Noé F. Mechanistic Models of Chemical Exchange Induced Relaxation in Protein NMR. J Am Chem Soc 2016;139:200-210. [DOI: 10.1021/jacs.6b09460] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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