1
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Wang C. Harnessing Halide Ligands and External Electric Fields in Cobalt-Catalyzed Oxidative Cyclometalation: Mechanistic Insights and Reactivity Modulation. J Org Chem 2025; 90:3974-3980. [PMID: 40071524 DOI: 10.1021/acs.joc.4c03058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2025]
Abstract
This study explores the roles of halide ligands and external electric fields (EEFs) in tuning the reactivity of cobalt-catalyzed oxidative cyclometalation (OCM) of 1,6-enynes, focusing on the concerted mechanism. Using density functional theory (DFT), we investigate how these factors influence key processes in the OCM step, particularly the cleavage of π bonds, the formation of M-C bonds, and the creation of a new C-C bond. Our findings show that polar solvents lower activation barriers, while halide ligands increase them, inhibiting the reaction by weakening π back-donation and reducing orbital overlap. However, strategic application of EEFs counteracts this inhibition, enhancing electron back-donation, stabilizing the transition state, and facilitating bond formation. The Dewar-Chatt-Duncanson (DCD) model, distortion/interaction analysis, and quantum theory of atoms in molecules (QTAIM) delocalization index (DI) calculation reveal that halide ligands reduce electron density on the cobalt center, weakening π-back-donation and raising energy barriers. This work provides key insights into how electronic and geometric factors can be manipulated to optimize the catalytic performance in cobalt-catalyzed synthetic transformations.
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Affiliation(s)
- Chao Wang
- Lab of Computational Chemistry and Drug Design, Peking University Shenzhen Graduate School, Shenzhen 518055, People's Republic of China
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2
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Swain L, Gopakumar K, Ramanan R. Unique catalytic role of intermolecular electric fields that emanate from Lewis acids in a ring closing carbonyl olefin metathesis reaction. Phys Chem Chem Phys 2025. [PMID: 40025836 DOI: 10.1039/d4cp04879b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2025]
Abstract
Electric field (EF) catalysis has evolved as an effective tool for controlling reactivity and selectivity of reactions. While EF catalysis brings precise control over reactivity, it also challenges the concept's practical realization due to the difficulties in juxtaposing reactants with directional EF. The present density functional theory (DFT) studies demonstrate the catalytic role of the inherent intermolecular EFs that originate from Lewis acids (LA) during a ring-closing carbonyl-olefin metathesis (RCCOM) reaction. The specificity of LA coordination to reactants generates specifically oriented intermolecular EF components along the reaction axis which is defined parallel to the direction of flow of electrons wherein the influence of the EF would be at maximum. By examining the thermal [2+2] cycloaddition and carbonyl-ene reaction steps in a RCCOM reaction as model systems, the results revealed the pivotal role of intermolecular EF in mixing some of the dormant ionic structures into normal covalent structures and facilitating a partial rotation of the nonbonding orbitals at the carbonyl oxygen to enhance an ionic pseudo-pericyclic pathway. The unique role of intermolecular EF is further verified by modelling the pristine reaction, in the absence of LAs, under oriented external EFs. The conspicuous intermolecular EF component adds to other modes of catalysis, such as conventional Lewis acidity, to result in the gross catalytic effect. The findings offer insights into the practical realization of EF catalysis by harnessing the intermolecular EFs and point out the need to include intermolecular EF as an inevitable factor for a holistic explanation of any catalytic mechanism.
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Affiliation(s)
- Lopita Swain
- Department of Chemistry, National Institute of Technology Rourkela, Odisha, 769008, India.
| | - Karthik Gopakumar
- Department of Chemistry, National Institute of Technology Rourkela, Odisha, 769008, India.
| | - Rajeev Ramanan
- Department of Chemistry, National Institute of Technology Rourkela, Odisha, 769008, India.
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3
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Scheele T, Neudecker T. On the Interplay Between Force, Temperature, and Electric Fields in the Rupture Process of Mechanophores. Chemphyschem 2024; 25:e202400648. [PMID: 39044653 DOI: 10.1002/cphc.202400648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Revised: 07/23/2024] [Accepted: 07/23/2024] [Indexed: 07/25/2024]
Abstract
The use of oriented external electric fields (OEEFs) shows promise as an alternative approach to chemical catalysis. The ability to target a specific bond by aligning it with a bond-weakening electric field may be beneficial in mechanochemical reactions, which use mechanical force to selectively rupture bonds. Previous computational studies have focused on a static description of molecules in OEEFs, neglecting to test the influence of thermal oscillations on molecular stability. Here, we performed ab initio molecular dynamics (AIMD) simulations based on density functional theory (DFT) to investigate the behaviour of a model mechanophore under the simultaneous influence of thermal and electric field effects. We show that the change in bond length caused by a strong electric field is largely independent of the temperature, both without and with mechanical stretching forces applied to the molecule. The amplitude of thermal oscillations increases with increasing field strength and temperature, but at low temperatures, the application of mechanical force leads to an additional increase in amplitude. Our research shows that methods for applying mechanical force and OEEFs can be safely combined and included in an AIMD simulation at both low and high temperatures, allowing researchers to computationally investigate mechanochemical reactions in realistic application scenarios.
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Affiliation(s)
- Tarek Scheele
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße 6, D-28359, Bremen, Germany
| | - Tim Neudecker
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße 6, D-28359, Bremen, Germany
- University of Bremen, Bremen Center for Computational Materials Science, Am Fallturm 1, D-28359, Bremen, Germany
- University of Bremen, MAPEX Center for Materials and Processes, Bibliothekstraße 1, D-28359, Bremen, Germany
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4
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Bai L, Tu D, Deng P, Chen Y, Tang Q. Electrophilic aromatic substitution of electron-rich arenes with N-fluorobenzenesulfonimide (NFSI) as an electrophile. RSC Adv 2024; 14:34811-34815. [PMID: 39483384 PMCID: PMC11526033 DOI: 10.1039/d4ra07008a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2024] [Accepted: 10/25/2024] [Indexed: 11/03/2024] Open
Abstract
An efficient amidation of electron-rich arenes using NFSI as a nitrogen source has been successfully disclosed. This amidation process can be easily conducted at elevated temperatures, without the need for catalysts or additives. A wide range of arenes substituted with hydroxy, alkoxy, or carbonyl groups were found to be compatible, yielding the desired amination products. Computational study shows that the amidation proceeds via an electrophilic aromatic substitution pathway, comprising a three-step process that includes substitution, addition, and elimination, which differs slightly from the classical mechanism.
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Affiliation(s)
- Lina Bai
- College of Pharmacy, Chongqing Research Center for Pharmaceutical Engineering, Chongqing Medical University No. 1 Yixueyuan Road Chongqing 400016 P. R. China
| | - Dewei Tu
- College of Pharmacy, Chongqing Research Center for Pharmaceutical Engineering, Chongqing Medical University No. 1 Yixueyuan Road Chongqing 400016 P. R. China
| | - Ping Deng
- College of Pharmacy, Chongqing Research Center for Pharmaceutical Engineering, Chongqing Medical University No. 1 Yixueyuan Road Chongqing 400016 P. R. China
| | - Yongjie Chen
- College of Pharmacy, Chongqing Research Center for Pharmaceutical Engineering, Chongqing Medical University No. 1 Yixueyuan Road Chongqing 400016 P. R. China
| | - Qiang Tang
- College of Pharmacy, Chongqing Research Center for Pharmaceutical Engineering, Chongqing Medical University No. 1 Yixueyuan Road Chongqing 400016 P. R. China
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5
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Stuyver T. TS-tools: Rapid and automated localization of transition states based on a textual reaction SMILES input. J Comput Chem 2024; 45:2308-2317. [PMID: 38850166 DOI: 10.1002/jcc.27374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 03/08/2024] [Accepted: 03/20/2024] [Indexed: 06/10/2024]
Abstract
Here, TS-tools is presented, a Python package facilitating the automated localization of transition states (TS) based on a textual reaction SMILES input. TS searches can either be performed at xTB or DFT level of theory, with the former yielding guesses at marginal computational cost, and the latter directly yielding accurate structures at greater expense. On a benchmarking dataset of mono- and bimolecular reactions, TS-tools reaches an excellent success rate of 95% already at xTB level of theory. For tri- and multimolecular reaction pathways - which are typically not benchmarked when developing new automated TS search approaches, yet are relevant for various types of reactivity, cf. solvent- and autocatalysis and enzymatic reactivity - TS-tools retains its ability to identify TS geometries, though a DFT treatment becomes essential in many cases. Throughout the presented applications, a particular emphasis is placed on solvation-induced mechanistic changes, another issue that received limited attention in the automated TS search literature so far.
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Affiliation(s)
- Thijs Stuyver
- Ecole Nationale Supérieure de Chimie de Paris, Université PSL, CNRS, Institute of Chemistry for Life and Health Sciences, Paris, France
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6
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Ma KX, Hong CM, Yan JM, Li QH, Liu TL. Synthesis of 1,2,4,5-tetra-substituted benzenes via copper-catalyzed dimerization of γ,δ-unsaturated ketones. Chem Commun (Camb) 2024; 60:7753-7756. [PMID: 38973629 DOI: 10.1039/d4cc02458c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/09/2024]
Abstract
An efficient cyclization for the synthesis of 1,2,4,5-tetra-substituted benzenes via copper catalyzed dimerization of γ,δ-unsaturated ketones has been described. This one-pot procedure employs the γ,δ-unsaturated ketones as the sole substrate with multiple C-C bond formation. This protocol features broad substrate scope and provides a facile and robust method to construct polysubstituted benzene derivatives under mild conditions.
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Affiliation(s)
- Kai-Xian Ma
- Chongqing Key Laboratory of Soft-Matter Materials Manufacturing, School of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China.
| | - Chuan-Ming Hong
- Chongqing Key Laboratory of Soft-Matter Materials Manufacturing, School of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China.
| | - Jiang-Min Yan
- Chongqing Key Laboratory of Soft-Matter Materials Manufacturing, School of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China.
| | - Qing-Hua Li
- Chongqing Key Laboratory of Soft-Matter Materials Manufacturing, School of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China.
| | - Tang-Lin Liu
- Chongqing Key Laboratory of Soft-Matter Materials Manufacturing, School of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China.
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7
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Weight BM, Weix DJ, Tonzetich ZJ, Krauss TD, Huo P. Cavity Quantum Electrodynamics Enables para- and ortho-Selective Electrophilic Bromination of Nitrobenzene. J Am Chem Soc 2024; 146:16184-16193. [PMID: 38814893 PMCID: PMC11177318 DOI: 10.1021/jacs.4c04045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 05/15/2024] [Accepted: 05/17/2024] [Indexed: 06/01/2024]
Abstract
Coupling molecules to a quantized radiation field inside an optical cavity has shown great promise to modify chemical reactivity. In this work, we show that the ground-state selectivity of the electrophilic bromination of nitrobenzene can be fundamentally changed by strongly coupling the reaction to the cavity, generating ortho- or para-substituted products instead of the meta product. Importantly, these are products that are not obtained from the same reaction outside the cavity. A recently developed ab initio approach was used to theoretically compute the relative energies of the cationic Wheland intermediates, which indicate the kinetically preferred bromination site for all products. Performing an analysis of the ground-state electron density for the Wheland intermediates inside and outside the cavity, we demonstrate how strong coupling induces reorganization of the molecular charge distribution, which in turn leads to different bromination sites directly dependent on the cavity conditions. Overall, the results presented here can be used to understand cavity induced changes to ground-state chemical reactivity from a mechanistic perspective as well as to directly connect frontier theoretical simulations to state-of-the-art, but realistic, experimental cavity conditions.
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Affiliation(s)
- Braden M. Weight
- Department
of Physics and Astronomy, University of
Rochester, Rochester, New York 14627, United States
| | - Daniel J. Weix
- Department
of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Zachary J. Tonzetich
- Department
of Chemistry, University of Texas at San
Antonio, San Antonio, Texas 78249, United States
| | - Todd D. Krauss
- Department
of Chemistry, University of Rochester, Rochester, New York 14627, United States
- The
Institute of Optics, Hajim School of Engineering, University of Rochester, Rochester, New York 14627, United States
| | - Pengfei Huo
- Department
of Chemistry, University of Rochester, Rochester, New York 14627, United States
- The
Institute of Optics, Hajim School of Engineering, University of Rochester, Rochester, New York 14627, United States
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8
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Bofill JM, Severi M, Quapp W, Ribas-Ariño J, de P R Moreira I, Albareda G. Optimal Oriented External Electric Fields to Trigger a Barrierless Oxaphosphetane Ring Opening Step of the Wittig Reaction. Chemistry 2024; 30:e202400173. [PMID: 38457260 DOI: 10.1002/chem.202400173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 03/05/2024] [Accepted: 03/07/2024] [Indexed: 03/10/2024]
Abstract
The Wittig reaction is one of the most important processes in organic chemistry for the asymmetric synthesis of olefinic compounds. In view of the increasingly acknowledged potentiality of the electric fields in promoting reactions, here we will consider the effect of the oriented external electric field (OEEF) on the second step of Wittig reaction (i. e. the ring opening oxaphosphetane) in a model system for non-stabilized ylides. In particular, we have determined the optimal direction and strength of the electric field that should be applied to annihilate the reaction barrier of the ring opening through the polarizable molecular electric dipole (PMED) model that we have recently developed. We conclude that the application of the optimal external electric field for the oxaphosphetane ring opening favours a Bestmann-like mechanism.
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Affiliation(s)
- Josep Maria Bofill
- Departament de Química Inorgànica i Orgànica, Secció de Química Orgànica, Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
| | - Marco Severi
- Department of Chemistry G. Ciamician, University of Bologna, Via F. Selmi 2, 40126, Bologna, Italy
| | - Wolfgang Quapp
- Mathematisches Institut, Universität Leipzig, PF 100920, D-04009, Leipzig, Germany
| | - Jordi Ribas-Ariño
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
| | - Ibério de P R Moreira
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, C/Martí i Franquès 1, 08028, Barcelona, Spain
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9
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Siddiqui SA, Stuyver T, Shaik S, Dubey KD. Designed Local Electric Fields-Promising Tools for Enzyme Engineering. JACS AU 2023; 3:3259-3269. [PMID: 38155642 PMCID: PMC10752214 DOI: 10.1021/jacsau.3c00536] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 10/11/2023] [Accepted: 10/12/2023] [Indexed: 12/30/2023]
Abstract
Designing efficient catalysts is one of the ultimate goals of chemists. In this Perspective, we discuss how local electric fields (LEFs) can be exploited to improve the catalytic performance of supramolecular catalysts, such as enzymes. More specifically, this Perspective starts by laying out the fundamentals of how local electric fields affect chemical reactivity and review the computational tools available to study electric fields in various settings. Subsequently, the advances made so far in optimizing enzymatic electric fields through targeted mutations are discussed critically and concisely. The Perspective ends with an outlook on some anticipated evolutions of the field in the near future. Among others, we offer some pointers on how the recent data science/machine learning revolution, engulfing all science disciplines, could potentially provide robust and principled tools to facilitate rapid inference of electric field effects, as well as the translation between optimal electrostatic environments and corresponding chemical modifications.
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Affiliation(s)
- Shakir Ali Siddiqui
- Molecular Simulation Lab, Department of Chemistry,
School of Natural Sciences, Shiv Nadar Institution of Eminence,
Delhi NCR, India 201314
| | - Thijs Stuyver
- Ecole Nationale Supérieure de
Chimie de Paris, Université PSL, CNRS, Institute of Chemistry for Life and Health
Sciences, 75 005 Paris, France
| | - Sason Shaik
- Institute of Chemistry, Edmond J Safra Campus,
The Hebrew University of Jerusalem, Givat Ram, Jerusalem,
9190400, Israel
| | - Kshatresh Dutta Dubey
- Molecular Simulation Lab, Department of Chemistry,
School of Natural Sciences, Shiv Nadar Institution of Eminence,
Delhi NCR, India 201314
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10
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Deraet X, Desmedt E, Van Lommel R, Van Speybroeck V, De Proft F. The electrophilic aromatic bromination of benzenes: mechanistic and regioselective insights from density functional theory. Phys Chem Chem Phys 2023; 25:28581-28594. [PMID: 37703074 DOI: 10.1039/d3cp03137c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/14/2023]
Abstract
The HBr-assisted electrophilic aromatic bromination of benzene, anisole and nitrobenzene was investigated using static DFT calculations in gas phase and implicit apolar (CCl4) and polar (acetonitrile) solvent models at the ωB97X-D/cc-pVTZ level of theory. The reaction profiles corresponding to either a direct substitution reaction or an addition-elimination process were constructed and insight into the preferred regioselectivity was provided using a combination of conceptual DFT reactivity indices, aromaticity indices, Wiberg bond indices and the non-covalent interaction index. Our results show that under the considered reaction conditions the bromination reaction preferentially occurs through an addition-elimination mechanism and without formation of a stable charged Wheland intermediate. The ortho/para directing effect of the electron-donating methoxy-group in anisole was ascribed to a synergy between strong electron delocalisation and attractive interactions. In contrast, the preferred meta-addition on nitrobenzene could not be traced back to any of these effects, nor to the intrinsic reactivity property of the reactant. In this case, an electrostatic clash between the ipso-carbon of the ring and the nitrogen atom resulting from the later nature of the rate-determining step, with respect to anisole, appeared to play a crucial role.
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Affiliation(s)
- Xavier Deraet
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Elsene, Brussels, Belgium.
| | - Eline Desmedt
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Elsene, Brussels, Belgium.
| | - Ruben Van Lommel
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Elsene, Brussels, Belgium.
- Molecular Design and Synthesis, Department of Chemistry, KU Leuven, Celestijnenlaan 200F Leuven Chem&Tech, Box 2404, 3001 Leuven, Belgium
| | | | - Frank De Proft
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, 1050 Elsene, Brussels, Belgium.
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11
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Scheele T, Neudecker T. Using oriented external electric fields to manipulate rupture forces of mechanophores. Phys Chem Chem Phys 2023; 25:28070-28077. [PMID: 37823201 DOI: 10.1039/d3cp03965j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/13/2023]
Abstract
Oriented external electric fields (OEEFs) can facilitate chemical reactions by selectively weakening bonds. This makes them a topic of interest in mechanochemistry, where mechanical force is used to rupture specific bonds in molecules. Using electronic structure calculations based on density functional theory (DFT), we investigate the effect of OEEFs on the mechanical force required to activate mechanophores. We demonstrate that OEEFs can greatly lower the rupture force of mechanophores, and that the degree of this effect highly depends on the angle relative to the mechanical force at which the field is being applied. The greatest lowering of the rupture force does not always occur at the point of perfect alignment between OEEF and the vector of mechanical force. Using natural bond orbital analysis, we show that mechanical force amplifies the effect that an OEEF has on the scissile bond of a mechanophore. By combining methods to simulate molecules in OEEFs with methods applying mechanical force, we present an effective tool for analyzing mechanophores in OEEFs and show that computationally determining optimal OEEFs for mechanophore activation can assist in the development of future experimental studies.
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Affiliation(s)
- Tarek Scheele
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße 6, D-28359 Bremen, Germany.
| | - Tim Neudecker
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße 6, D-28359 Bremen, Germany.
- Bremen Center for Computational Materials Science, University of Bremen, Am Fallturm 1, D-28359 Bremen, Germany
- MAPEX Center for Materials and Processes, University of Bremen, Bibliothekstraße 1, D-28359 Bremen, Germany
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12
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Mir S, Kooshki S. Innovative Method for Water-in-Oil Emulsion Treatment Using Atmospheric Nonthermal-Plasma Technology. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:14459-14473. [PMID: 37734063 DOI: 10.1021/acs.langmuir.3c02268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/23/2023]
Abstract
The field of plasma-liquid interactions is rapidly growing, with increasing publications across applications. While plasma's interactions with water and oil have been researched, there is a notable gap in the study of plasma-emulsion interactions and their practical applications. Investigating plasma-emulsion interactions offers a dual advantage, as demonstrated in this study, as it is applicable to both water/oil separation and emulsion stabilization processes. This study introduces a groundbreaking approach utilizing the fountain dielectric barrier discharge (FDBD) plasma reactor. The reactor exposes a model emulsion to different plasma gases, such as air, nitrogen, argon, and ammonia, along with varying parameters of plasma input voltage and treatment time. Consequently, due to demulsification, the emulsion segregates into distinct water and oil phases. Remarkably, the results demonstrate that short-term plasma treatment leads to the separation of over 99% of emulsified water. However, prolonged exposure to plasma for around 7 min reveals a decrease in the volume of free-separated water, implying the occurrence of stable emulsion formation instead of further demulsification. To optimize experimental conditions for compliance with regulatory requirements, the study employs the response surface methodology (RSM). Adapting pH and separation contours in three-dimensional (3D) RSM plots shows that achieving higher separation is likely associated with higher pH levels in air, nitrogen, and argon plasmas. Notably, the plasma treatment involving ammonia gas elevates the pH level and yields the highest degree of separation compared with air, nitrogen, or argon plasmas.
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Affiliation(s)
- Sonia Mir
- Department of Chemical Engineering, Amirkabir University of Technology (Tehran Polytechnic), 424 Hafez Avenue, Tehran 15875-4413, Iran
| | - Saeed Kooshki
- Division of Environmental Physics, Faculty of Mathematics, Physics, and Informatics, Comenius University, Mlynská dolina F2, Bratislava 842 48, Slovakia
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13
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Scheele T, Neudecker T. Investigating the accuracy of density functional methods for molecules in electric fields. J Chem Phys 2023; 159:124111. [PMID: 38127387 DOI: 10.1063/5.0164372] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 09/05/2023] [Indexed: 12/23/2023] Open
Abstract
The use of oriented external electric fields (OEEFs) as a potential tool for catalyzing chemical reactions has gained traction in recent years. Electronic structure calculations using OEEFs are commonly done using methods based on density functional theory (DFT), but until now, the performance of DFT methods for calculating molecules in OEEFs had not been assessed in a more general scope. Looking at the accuracy of molecular geometries, electronic energies, and electric dipole moments compared to accurate coupled-cluster with perturbative triples data, we have investigated a wide variety of density functionals using different basis sets to determine how well the individual functionals perform on various types of chemical bonds. We found that most functionals accurately calculate geometries in OEEFs and that small basis sets are sufficient in many cases. Calculations of electronic energies show a significant error introduced by the OEEF, which the use of a larger basis set helps mitigate. Our findings show that DFT methods can be used for accurate calculations in OEEFs, allowing researchers to make full use of the advantages that they bring.
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Affiliation(s)
- Tarek Scheele
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße NW2, D-28359 Bremen, Germany
| | - Tim Neudecker
- University of Bremen, Institute for Physical and Theoretical Chemistry, Leobener Straße NW2, D-28359 Bremen, Germany
- Bremen Center for Computational Materials Science, University of Bremen, Am Fallturm 1, D-28359 Bremen, Germany
- MAPEX Center for Materials and Processes, University of Bremen, Bibliothekstraße 1, D-28359 Bremen, Germany
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14
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Bofill JM, Severi M, Quapp W, Ribas-Ariño J, Moreira IDPR, Albareda G. An algorithm to find the optimal oriented external electrostatic field for annihilating a reaction barrier in a polarizable molecular system. J Chem Phys 2023; 159:114112. [PMID: 37724726 DOI: 10.1063/5.0167749] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 08/23/2023] [Indexed: 09/21/2023] Open
Abstract
The use of oriented external electric fields (OEEFs) to promote and control chemical reactivity has motivated many theoretical and computational studies in the last decade to model the action of OEEFs on a molecular system and its effects on chemical processes. Given a reaction, a central goal in this research area is to predict the optimal OEEF (oOEEF) required to annihilate the reaction energy barrier with the smallest possible field strength. Here, we present a model rooted in catastrophe and optimum control theories that allows us to find the oOEEF for a given reaction valley in the potential energy surface (PES). In this model, the effective (or perturbed) PES of a polarizable molecular system is constructed by adding to the original, non-perturbed, PES a term accounting for the interaction of the OEEF with the intrinsic electric dipole and polarizability of the molecular system, so called the polarizable molecular electric dipole (PMED) model. We demonstrate that the oOEEF can be established by locating a point in the original PES with unique topological properties: the optimal barrier breakdown or bond-breaking point (oBBP). The essential feature of the oBBP structure is the fact that this point maintains its topological properties for all the applied OEEFs, also for the unperturbed PES, thus becoming much more relevant than the commonly used minima and transition state structures. The PMED model proposed here has been implemented in an open access package and is shown to successfully predict the oOEEF for two processes: an isomerization reaction of a cumulene derivative and the Huisgen cycloaddition reaction.
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Affiliation(s)
- Josep Maria Bofill
- Departament de Química Inorgànica i Orgànica, Secció de Química Orgànica, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Marco Severi
- Department of Chemistry G. Ciamician, University of Bologna, Via F. Selmi 2, 40126 Bologna, Italy
| | - Wolfgang Quapp
- Mathematisches Institut, Universität Leipzig, PF 100920, D-04009 Leipzig, Germany
| | - Jordi Ribas-Ariño
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Ibério de P R Moreira
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
- Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Guillermo Albareda
- Ideaded, Carrer de la Tecnologia, 35, 08840 Viladecans, Barcelona, Spain
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15
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Lv J, Sun R, Yang Q, Gan P, Yu S, Tan Z. Research on Electric Field-Induced Catalysis Using Single-Molecule Electrical Measurement. Molecules 2023; 28:4968. [PMID: 37446629 DOI: 10.3390/molecules28134968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 06/19/2023] [Accepted: 06/22/2023] [Indexed: 07/15/2023] Open
Abstract
The role of catalysis in controlling chemical reactions is crucial. As an important external stimulus regulatory tool, electric field (EF) catalysis enables further possibilities for chemical reaction regulation. To date, the regulation mechanism of electric fields and electrons on chemical reactions has been modeled. The electric field at the single-molecule electronic scale provides a powerful theoretical weapon to explore the dynamics of individual chemical reactions. The combination of electric fields and single-molecule electronic techniques not only uncovers new principles but also results in the regulation of chemical reactions at the single-molecule scale. This perspective focuses on the recent electric field-catalyzed, single-molecule chemical reactions and assembly, and highlights promising outlooks for future work in single-molecule catalysis.
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Affiliation(s)
- Jieyao Lv
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Ruiqin Sun
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Qifan Yang
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Pengfei Gan
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Shiyong Yu
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Zhibing Tan
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
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16
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Hong D, Zeng W, Liu ZT, Liu FS, Liu QJ. Initial Decomposition of DATB Induced by an External Electric Field. J Phys Chem A 2023. [PMID: 37307408 DOI: 10.1021/acs.jpca.3c01298] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
1,3-Diamino-2,4,6-trinitrobenzene (DATB), a nitro aromatic explosive with excellent properties, can be detonated by an electric field. Using first-principles calculation, we have investigated the initial decomposition of DATB under an electric field. In the realm of electric fields, the rotation of the nitro group around the benzene ring will cause deformation of the DATB structure. Furthermore, when an electric field is applied along the [100] or [001] direction, the C4-N10/C2-N8 bonds initiate decomposition due to electron excitation. On the contrary, the electric field along the [010] direction has a weak influence on DATB. These, together with electronic structures and infrared spectroscopy, give us a visual perspective of the energy transfer and the decomposition caused by C-N bond breaking.
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Affiliation(s)
- Dan Hong
- School of Physical Science and Technology, Southwest Jiaotong University, Key Laboratory of Advanced Technologies of Materials, Ministry of Education of China, Chengdu 610031, People's Republic of China
- School of Medical Information Engineering, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, People's Republic of China
| | - Wei Zeng
- Teaching and Research Group of Chemistry, School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, People's Republic of China
| | - Zheng-Tang Liu
- State Key Laboratory of Solidification Processing, Northwestern Polytechnical University, Xi'an 710072, People's Republic of China
| | - Fu-Sheng Liu
- School of Physical Science and Technology, Southwest Jiaotong University, Key Laboratory of Advanced Technologies of Materials, Ministry of Education of China, Chengdu 610031, People's Republic of China
| | - Qi-Jun Liu
- School of Physical Science and Technology, Southwest Jiaotong University, Key Laboratory of Advanced Technologies of Materials, Ministry of Education of China, Chengdu 610031, People's Republic of China
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17
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Ren FD, Liu YZ, Wang XL, Qiu LL, Meng ZH, Cheng X, Li YX. Strong External Electric Fields Reduce Explosive Sensitivity: A Theoretical Investigation into the Reaction Selectivity in NH2NO2∙∙∙NH3. Molecules 2023; 28:molecules28062586. [PMID: 36985558 PMCID: PMC10058811 DOI: 10.3390/molecules28062586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Revised: 03/04/2023] [Accepted: 03/07/2023] [Indexed: 03/18/2023] Open
Abstract
Controlling the selectivity of a detonation initiation reaction of explosive is essential to reduce sensitivity, and it seems impossible to reduce it by strengthening the external electric field. To verify this, the effects of external electric fields on the initiation reactions in NH2NO2∙∙∙NH3, a model system of the nitroamine explosive with alkaline additive, were investigated at the MP2/6-311++G(2d,p) and CCSD(T)/6-311++G(2d,p) levels. The concerted effect in the intermolecular hydrogen exchange is characterized by an index of the imaginary vibrations. Due to the weakened concerted effects by the electric field along the −x-direction opposite to the “reaction axis”, the dominant reaction changes from the intermolecular hydrogen exchange to 1,3-intramolecular hydrogen transference with the increase in the field strengths. Furthermore, the stronger the field strengths, the higher the barrier heights become, indicating the lower sensitivities. Therefore, by increasing the field strength and adjusting the orientation between the field and “reaction axis”, not only can the reaction selectivity be controlled, but the sensitivity can also be reduced, in particular under a super-strong field. Thus, a traditional concept, in which the explosive is dangerous under the super-strong external electric field, is theoretically broken. Compared to the neutral medium, a low sensitivity of the explosive with alkaline can be achieved under the stronger field. Employing atoms in molecules, reduced density gradient, and surface electrostatic potentials, the origin of the reaction selectivity and sensitivity change is revealed. This work provides a new idea for the technical improvement regarding adding the external electric field into the explosive system.
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Affiliation(s)
- Fu-De Ren
- School of Chemical Engineering and Technology, North University of China, Taiyuan 030051, China
- Correspondence: ; Tel.: +86-351-392-2117
| | - Ying-Zhe Liu
- State Key Laboratory of Fluorine and Nitrogen Chemicals, Xi’an Modern Chemistry Research Institute, Xi’an 710065, China
| | - Xiao-Lei Wang
- School of Chemical Engineering and Technology, North University of China, Taiyuan 030051, China
| | - Li-Li Qiu
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China
| | - Zi-Hui Meng
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China
| | - Xiang Cheng
- School of Intelligent Engineering, Zhengzhou University of Aeronautics, Zhengzhou 450003, China
| | - Yong-Xiang Li
- School of Chemical Engineering and Technology, North University of China, Taiyuan 030051, China
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18
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Qiu CS, Qiu NP, Flinn C, Zhao Y. DFT mechanistic studies of boron-silicon exchange reactions between silyl-substituted arenes and boron bromides. Phys Chem Chem Phys 2023; 25:6714-6725. [PMID: 36805579 DOI: 10.1039/d2cp05615a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
Abstract
C-B bond forming reactions are important methodologies in modern synthetic chemistry, since many borylated organic substrates, ranging from alkanes and alkenes to arenes and heteroarenes, are useful intermediates for the synthesis of natural products, pharmaceuticals, and organic π-conjugated materials. Among numerous borylation methods, C-Si/B-Br exchange reactions have attracted increasing attention in recent years. While experimental exploration has been continually carried out for more than two decades, mechanistic insights into this type of reaction have not yet been clearly established. To address this deficiency of knowledge, we performed density functional theory (DFT) calculations to map out the reaction pathways for a range of boron-silicon exchange reactions between boron tribromide (BBr3) and trimethylsilyl-substituted arenes (TMSAr). Our computational analyses have disclosed the energetic, structural, and electronic properties for key stationary points on the potential energy surfaces (PES) in both the gas and solution (CH2Cl2) phases.
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Affiliation(s)
- Christopher S Qiu
- Department of Chemistry, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.
| | - Nicholas P Qiu
- Department of Chemistry, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.
| | - Christopher Flinn
- Department of Chemistry, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.
| | - Yuming Zhao
- Department of Chemistry, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.
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19
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A catastrophe theory-based model for optimal control of chemical reactions by means of oriented electric fields. Theor Chem Acc 2023. [DOI: 10.1007/s00214-023-02959-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Abstract
AbstractThe effect of oriented external electric fields (OEEF) on chemical reactivity has been studied theoretically and computationally in the last decades. A central goal in this research area is to predict the orientation and the smallest amplitude electric field that renders a barrierless chemical process with the smallest possible strength. Recently, a model to find the optimal electric field has been proposed and described (Bofill JM et al., J. Chem. Theory Comput. 18:935, 2022). We here proof that this model is based on catastrophe and optimum control theories. Based on both theories a technical treatment of the model is given and applied to a two-dimensional generic example that provides insight into its nature and capability. Finally, the model is applied to determine the optimal OEEF for the trans-to-cis isomerization of a [3]cumulene derivative.
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20
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Lin J, Lv Y, Song K, Song X, Zang H, Du P, Zang Y, Zhu D. Cleavage of non-polar C(sp 2)‒C(sp 2) bonds in cycloparaphenylenes via electric field-catalyzed electrophilic aromatic substitution. Nat Commun 2023; 14:293. [PMID: 36653339 PMCID: PMC9849230 DOI: 10.1038/s41467-022-35686-4] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 12/20/2022] [Indexed: 01/19/2023] Open
Abstract
Electrophilic aromatic substitution (EAS) is one of the most fundamental reactions in organic chemistry. Using an oriented external electric field (OEEF) instead of traditional reagents to tune the EAS reactivity can offer an environmentally friendly method to synthesize aromatic compounds and hold the promise of broadening its scope. Despite these advantages, OEEF catalysis of EAS is difficult to realize, due to the challenge of microscopically orienting OEEF along the direction of electron reorganizations. In this work, we demonstrate OEEF-catalyzed EAS reactions in a series of cycloparaphenylenes (CPPs) using the scanning tunneling microscope break junction (STM-BJ) technique. Crucially, the unique radial π-conjugation of CPPs enables a desired alignment for the OEEF to catalyze the EAS with Au STM tip (or substrate) acting as an electrophile. Under mild conditions, the OEEF-catalyzed EAS reactions can cleave the inherently inert C(sp2)-C(sp2) bond, leading to high-yield (~97%) formation of linear oligophenylenes terminated with covalent Au-C bonds. These results not only demonstrate the feasibility of OEEF catalysis of EAS, but also offer a way of exploring new mechanistic principles of classic organic reactions aided by OEEF.
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Affiliation(s)
- Junfeng Lin
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yaxin Lv
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- School of Chemistry, Tiangong University, Tianjin, 300387, China
| | - Kai Song
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
| | - Xuwei Song
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Hongjun Zang
- School of Chemistry, Tiangong University, Tianjin, 300387, China
| | - Pingwu Du
- Hefei National Research Center for Physical Sciences at the Microscale, iChEM, CAS Key Laboratory of Materials for Energy Conversion, Department of Materials Science and Engineering, University of Science and Technology of China, Hefei, 230026, China
| | - Yaping Zang
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Daoben Zhu
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
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21
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Bloux H, Dahiya A, Hébert A, Fabis F, Schoenebeck F, Cailly T. Base-Mediated Radio-Iodination of Arenes by Using Organosilane and Organogermane as Radiolabelling Precursors. Chemistry 2023; 29:e202203366. [PMID: 36607172 DOI: 10.1002/chem.202203366] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2022] [Revised: 01/05/2023] [Accepted: 01/06/2023] [Indexed: 01/07/2023]
Abstract
The radio-iodination of arenes is investigated from organosilane and organogermane precursors using ipso-electrophilic halogenation (IEH). Discovery of a mild base mediated process allows radio-iodination in HFIP (1,1,1,3,3,3-hexafluoro-2-propanol) of either aryl silane or germane, with germanes being more reactive. Clinical potential of arylgermanes as radio-iodination precursors is demonstrated through the labelling of [125 I]IMTO (iodometomidate) and [125 I]MIBG (meta-iodobenzylguanidine) thus offering an alternative to radio-iododestannylation processes using non-toxic precursors.
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Affiliation(s)
- Hugo Bloux
- Centre d'Etudes et de Recherche sur le Médicament de Normandie (CERMN), Normandie Univ, UNICAEN, 14000, Caen, France
| | - Amit Dahiya
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
| | - Alexandra Hébert
- Centre d'Etudes et de Recherche sur le Médicament de Normandie (CERMN), Normandie Univ, UNICAEN, 14000, Caen, France
| | - Frédéric Fabis
- Centre d'Etudes et de Recherche sur le Médicament de Normandie (CERMN), Normandie Univ, UNICAEN, 14000, Caen, France
| | - Franziska Schoenebeck
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074, Aachen, Germany
| | - Thomas Cailly
- Centre d'Etudes et de Recherche sur le Médicament de Normandie (CERMN), Normandie Univ, UNICAEN, 14000, Caen, France.,IMOGERE, Normandie Univ, UNICAEN, 14000, Caen, France.,Department of Nuclear Medicine, CHU Côte de Nacre, 14000, Caen, France.,Institut Blood and Brain @Caen-Normandie (BB@C), Boulevard Henri Becquerel, 14074, Caen, France
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22
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Hanaway D, Kennedy CR. Automated Variable Electric-Field DFT Application for Evaluation of Optimally Oriented Electric Fields on Chemical Reactivity. J Org Chem 2023; 88:106-115. [PMID: 36507909 PMCID: PMC9830642 DOI: 10.1021/acs.joc.2c01893] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Recent theoretical work and experiments at molecular junctions have provided a strong conceptualization for the effects of oriented electric fields (OEFs) on organic reactions. Depending on the axis of application, OEFs can increase (or decrease) the reaction rate or distinguish between isomeric pathways. Despite the conceptual elegance of OEFs, which may be applied externally or induced locally, as tools for catalyzing organic reactions, implementation in synthetically relevant systems has been hampered by inefficiencies in evaluating reaction sensitivity to field effects. Herein, we describe the development of the Automated Variable Electric-Field DFT Application (A.V.E.D.A.) for streamlined evaluation of a reaction's susceptibility to OEFs. This open-source software was designed to be accessible for nonexpert users of computational and programming tools. Following initiation by a single command (and with no subsequent intervention) the Linux workflow manages a series of density functional theory calculations and mathematical manipulations to optimize local-minimum and transition-state structures in oriented electric fields of increasing magnitude. The resulting molecular and reaction dipole moments, field-perturbed geometries, and net effective activation energies are compiled for user interpretation. Ten representative pericyclic reactions that showcase the development and evaluation of A.V.E.D.A. are described.
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23
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Dubey KD, Stuyver T, Shaik S. Local Electric Fields: From Enzyme Catalysis to Synthetic Catalyst Design. J Phys Chem B 2022; 126:10285-10294. [PMID: 36469939 DOI: 10.1021/acs.jpcb.2c06422] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
This Mini-Review Article outlines recent advances in the study of local electric field (LEF) governed enzyme catalysis and the application of the LEF principle in synthetic catalyst design. We start by discussing the electrostatics principles that drive enzyme catalysis, and its experimental verifications through vibrational Stark spectroscopy. Subsequently, we describe aspects of LEFs other than catalysis, i.e., induction of mechanistic crossovers, among others. Here, we focus on the early work done using computational tools, along with some recent contributions. Following an in-depth discussion of the role of LEFs in enzyme catalysis, we then highlight some recent works on designed local electric fields (D-LEF) and their applications in organic synthesis. Subsequently, we turn to D-LEFs in synthetic enzymes and supramolecular systems (cf. the work by the Head-Gordon group). We end by discussing some of the software packages that have been developed to analyze local electric fields computationally. Overall, the present Mini-Review Article paints an insightful picture of the current state of the art using LEF in enzyme catalysis and its application for further bioengineering and synthetic organic frameworks in a broad perspective.
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Affiliation(s)
- Kshatresh Dutta Dubey
- Department of Chemistry, School of Natural Sciences, Shiv Nadar Institution of Eminence Delhi-NCR, Gautam Buddha Nagar, Uttar Pradesh201314, India
| | - Thijs Stuyver
- Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts02139, United States
| | - Sason Shaik
- The Hebrew University, Institute of Chemistry, Edmond J. Safra Campus at Givat Ram, Jerusalem, 9190401Israel
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24
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Surkau J, Bläsing K, Bresien J, Michalik D, Villinger A, Schulz A. A Lewis Acid Stabilized Ketenimine in an Unusual Variant of the Electrophilic Aromatic Substitution. Chemistry 2022; 28:e202201905. [PMID: 35989474 PMCID: PMC10092272 DOI: 10.1002/chem.202201905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Indexed: 11/07/2022]
Abstract
Electrophilic aromatic substitution (EAS) can provide a straightforward approach to the efficient synthesis of functionalized complex aromatic molecules. In general, Lewis acids serve as a beneficial stimulus for the formation of a Wheland complex, the intermediate in the classical SE Ar mechanism of EAS, which is responsible for H/E (E=electrophile) substitution under formal H+ elimination. Herein, we report an unusual variant of EAS, in which a complex molecule such as the tricyanomethane, HC(CN)3 , is activated with a strong Lewis acid (B(C6 F5 )3 ) to the point where it can finally be used in an EAS. However, the Lewis acid here causes the isomerization of the tricyanomethane to the ketenimine, HN=C=C(CN)2 , which in turn directly attacks the aromatic species in the EAS, with simultaneous proton migration of the aromatic proton to the imino group, so that no elimination occurs that is otherwise observed in the SE Ar mechanism. By this method, it is possible to build up amino-malononitrile-substituted aromatic compounds in one step.
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Affiliation(s)
- Jonas Surkau
- Institut für ChemieUniversität RostockAlbert-Einstein-Straße 3a18059RostockGermany
| | - Kevin Bläsing
- Institut für ChemieUniversität RostockAlbert-Einstein-Straße 3a18059RostockGermany
| | - Jonas Bresien
- Institut für ChemieUniversität RostockAlbert-Einstein-Straße 3a18059RostockGermany
| | - Dirk Michalik
- Institut für ChemieUniversität RostockAlbert-Einstein-Straße 3a18059RostockGermany
- Leibniz-Institut für Katalyse e.V. an derUniversität RostockAlbert-Einstein-Straße 29a18059RostockGermany
| | - Alexander Villinger
- Institut für ChemieUniversität RostockAlbert-Einstein-Straße 3a18059RostockGermany
| | - Axel Schulz
- Institut für ChemieUniversität RostockAlbert-Einstein-Straße 3a18059RostockGermany
- Leibniz-Institut für Katalyse e.V. an derUniversität RostockAlbert-Einstein-Straße 29a18059RostockGermany
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25
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Diao W, Yan S, Farrell JD, Wang B, Ye F, Wang Z. Preorganized Internal Electric Field Powers Catalysis in the Active Site of Uracil-DNA Glycosylase. ACS Catal 2022. [DOI: 10.1021/acscatal.2c02886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Wenwen Diao
- Center for Advanced Materials Research, Beijing Normal University, Zhuhai 519087, China
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325000, China
| | - Shengheng Yan
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - James D. Farrell
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Binju Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Fangfu Ye
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325000, China
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- Oujiang Laboratory (Zhejiang Lab for Regenerative Medicine, Vision and Brain Health), Wenzhou, Zhejiang 325001, China
| | - Zhanfeng Wang
- Center for Advanced Materials Research, Beijing Normal University, Zhuhai 519087, China
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26
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Chen W, Yi X, Liu Z, Tang X, Zheng A. Carbocation chemistry confined in zeolites: spectroscopic and theoretical characterizations. Chem Soc Rev 2022; 51:4337-4385. [PMID: 35536126 DOI: 10.1039/d1cs00966d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Acid-catalyzed reactions inside zeolites are one type of broadly applied industrial reactions, where carbocations are the most common intermediates of these reaction processes, including methanol to olefins, alkene/aromatic alkylation, and hydrocarbon cracking/isomerization. The fundamental research on these acid-catalyzed reactions is focused on the stability, evolution, and lifetime of carbocations under the zeolite confinement effect, which greatly affects the efficiency, selectivity and deactivation of zeolite catalysts. Therefore, a profound understanding of the carbocations confined in zeolites is not only beneficial to explain the reaction mechanism but also drive the design of new zeolite catalysts with ideal acidity and cages/channels. In this review, we provide both an in-depth understanding of the stabilization of carbocations by the pore confinement effect and summary of the advanced characterization methods to capture carbocations in zeolites, including UV-vis spectroscopy, solid-state NMR, fluorescence microscopy, IR spectroscopy and Raman spectroscopy. Also, we clarify the relationship between the activity and stability of carbocations in zeolite-catalyzed reactions, and further highlight the role of carbocations in various hydrocarbon conversion reactions inside zeolites with diverse frameworks and varying acidic properties.
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Affiliation(s)
- Wei Chen
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, P. R. China.
| | - Xianfeng Yi
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, P. R. China.
| | - Zhiqiang Liu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, P. R. China.
| | - Xiaomin Tang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, P. R. China.
| | - Anmin Zheng
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Center for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, P. R. China. .,University of Chinese Academy of Sciences, Beijing 100049, P. R. China
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27
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Nakatani K, Teshigawara S, Tanahashi Y, Kasahara K, Higashi M, Sato H. Solvation in nitration of benzene and the valence electronic structure of the Wheland intermediate. Phys Chem Chem Phys 2022; 24:16453-16461. [PMID: 35647764 DOI: 10.1039/d2cp01699k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Nitration of benzene is a representative aromatic substitution reaction related to the σ-complex (arenium ion or "Wheland" intermediate) concept. This reaction is typically carried out in a mixed acid solution to generate nitronium ions, and how solvent molecules play roles in the reaction has been of great interest. Here we will shed new light on the reaction, namely the electronic structure and the microscopic insights of the solvation, which have been rarely discussed so far. We studied this process using the reference interaction site model-self consistent field with constrained spatial electron density distribution (RISM-SCF-cSED) method, considering sulfuric acid or water molecules as a solvent. In this method, the electronic structure of the solute and the solvation structure are self-consistently determined based on quantum chemistry and statistical mechanics of molecular liquids. The solvation free energy surfaces in solution and solvation structures were verified. In the bond formation process of benzene and nitronium ions, the solvation structure by sulfuric acid molecules drastically changes and the solvation effect on the free energy is quite large. We revealed largely contributing resonance structures in the π-electron system of the σ-complex in gas and solution phases by analysing the valence electronic structures.
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Affiliation(s)
- Kaho Nakatani
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan.
| | - Sho Teshigawara
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan.
| | - Yuta Tanahashi
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan.
| | - Kento Kasahara
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan.
| | - Masahiro Higashi
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan. .,Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Nishikyo-ku, Kyoto 615-8520, Japan
| | - Hirofumi Sato
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan. .,Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Nishikyo-ku, Kyoto 615-8520, Japan.,Fukui Institute for Fundamental Chemistry, Kyoto University, Takano Nishihiraki-cho 34-4, Sakyo-ku, Kyoto 606-8103, Japan
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28
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Geoffroy-Neveux A, Labet V, Alikhani ME. Influence of an Oriented External Electric Field on the Mechanism of Double Proton Transfer between Pyrazole and Guanidine: from an Asynchronous Plateau Transition State to a Synchronous or Stepwise Mechanism. J Phys Chem A 2022; 126:3057-3071. [PMID: 35544749 DOI: 10.1021/acs.jpca.1c10553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The double proton transfer (DPT) reaction between pyrazole and guanidine, a concerted reaction but strongly asynchronous and presenting a "plateau transition region", has been theoretically reinvestigated in the presence of an external uniform electric field. First, we computed the reaction path by DFT and proposed a very detailed description of the constitutive electronic events, based on the ELF topology and the bond evolution theory. Then, we studied the effect of an oriented external electric field (OEEF) on the reaction mechanism, for an OEEF oriented along the proton transfer axis. We observe that in one direction, the DPT reaction can be transformed into a stepwise reaction, going through a stabilized single proton transferred intermediate. Contrarily, the two proton transfers occur simultaneously when the electric field is applied in the opposite direction. In the latter case, the order in which the two protons are transferred in the same elementary step can even be reversed if the OEEF is intense enough. Finally, it has been shown that the evolution of the double proton transfer reaction in the presence of an electric field could be quantitatively anticipated by analyzing the ELF value at the bifurcation point between V(A, H) proton donor and V(B) proton acceptor of the double hydrogen bonded complex in the entrance channel.
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Affiliation(s)
| | - Vanessa Labet
- MONARIS UMR 8233 CNRS, Sorbonne Université, 4 place Jussieu, 75252 Paris Cedex 05, France
| | - M Esmail Alikhani
- MONARIS UMR 8233 CNRS, Sorbonne Université, 4 place Jussieu, 75252 Paris Cedex 05, France
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29
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Quan A, Zhu J, Ma J, Guan K, Yang C, Wang H, Jiang Y, Zhou S, Chen J, Wang C, Hu S. Cation-Gated Ion Transport at Nanometer Scale for Tunable Power Generation. J Phys Chem Lett 2022; 13:2625-2631. [PMID: 35297247 DOI: 10.1021/acs.jpclett.2c00156] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Gated ion channels in biological cell membranes allow efficient tuning of cross-membrane ion transport with enhanced permeation and selectivity, converting ionic signals into various forms of electrical signals and energies on demands, which functionalities though are still difficult to achieve in artificial membranes. Here, we report cation-gated ion transport through synthesized porous aromatic films containing nanometer-scale ionic channels together with -NH2 groups at interiors. Ion selectivity and permeability is greatly tuned by gating cations, up to 2 orders of magnitude, and as a consequence, the membrane efficiently produces switchable electricity output from salinity gradients. The results are attributed to positively charged cations binding at -NH2 groups, which screens the intrinsic negative surface charge at channels' interiors and inverts charge polarity there. Our work adds understanding to ion gating effects at nanoscale and offers strategies of developing smart membranes and their heterostructures for separation, energy conversion, cell membrane mimics, and related technologies.
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Affiliation(s)
- Anchang Quan
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Jieyu Zhu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Jiaojiao Ma
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - KaiWen Guan
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Chongyang Yang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Hao Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Yu Jiang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Shiyuan Zhou
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Jiawei Chen
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Cheng Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Sheng Hu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
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30
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Bofill JM, Quapp W, Albareda G, Moreira IDPR, Ribas-Ariño J. Controlling Chemical Reactivity with Optimally Oriented Electric Fields: A Generalization of the Newton Trajectory Method. J Chem Theory Comput 2022; 18:935-952. [PMID: 35044173 DOI: 10.1021/acs.jctc.1c00943] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The use of oriented external electric fields (OEEF) as a tool to accelerate chemical reactions has recently attracted much interest. A new model to calculate the optimal OEEF of the least intensity to induce a barrierless chemical reaction path is presented. A suitable ansatz is provided by defining an effective potential energy surface (PES), which considers the unperturbed or original PES of the molecular reactive system and the action of a constant OEEF on the overall dipole moment of system. Based on a generalization of the Newton Trajectories (NT) method, it is demonstrated that the optimal OEEF can be determined upon locating a special point of the potential energy surface (PES), the so-called "optimal bond-breaking point" (optimal BBP), for which two different algorithms are proposed. At this point, the gradient of the original or unperturbed PES is an eigenvector of zero eigenvalue of the Hessian matrix of the effective PES. A thorough discussion of the geometrical aspects of the optimal BBP and the optimal OEEF is provided using a two-dimensional model, and numerical calculations of the optimal OEEF for a SN2 reaction and the 1,3-dipolar retrocycloaddition of isoxazole to fulminic acid plus acetylene reaction serve as a proof of concept. The knowledge of the orientation of optimal OEEF provides a practical way to reduce the effective barrier of a given chemical process.
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Affiliation(s)
- Josep Maria Bofill
- Departament de Química Inorgànica i Orgànica, Secció de Química Orgànica, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain.,Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Wolfgang Quapp
- Mathematisches Institut, Universität Leipzig, PF 100920, D-04009 Leipzig, Germany
| | - Guillermo Albareda
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain.,Max Planck Institute for the Structure and Dynamics of Matter and Center for Free Electron Laser Science, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Ibério de P R Moreira
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain.,Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Jordi Ribas-Ariño
- Institut de Química Teòrica i Computacional, (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain.,Departament de Ciència de Materials i Química Física, Secció de Química Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
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31
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Shernyukov AV, Salnikov GE, Krasnov VI, Genaev AM. Cluster halogenation of adamantane and its derivatives with bromine and iodine monochloride. Org Biomol Chem 2022; 20:8515-8527. [DOI: 10.1039/d2ob01455f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Noncatalytic halogenation of adamantane with Br2 or ICl proceeds according to the cluster mechanism featuring high kinetic order in halogen and a sharp decrease in DFT energy barrier when additional halogen molecules are involved in the system.
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Affiliation(s)
- Andrey V. Shernyukov
- N.N. Vorozhtsov Institute of Organic Chemistry, Pr. Ak. Lavrentieva 9, Novosibirsk 630090, Russia
| | - George E. Salnikov
- N.N. Vorozhtsov Institute of Organic Chemistry, Pr. Ak. Lavrentieva 9, Novosibirsk 630090, Russia
| | - Vyacheslav I. Krasnov
- N.N. Vorozhtsov Institute of Organic Chemistry, Pr. Ak. Lavrentieva 9, Novosibirsk 630090, Russia
| | - Alexander M. Genaev
- N.N. Vorozhtsov Institute of Organic Chemistry, Pr. Ak. Lavrentieva 9, Novosibirsk 630090, Russia
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32
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Abstract
The mechanism of aromatic nitration is critically reviewed with particular emphasis on the paradox of the high positional selectivity of substitution in spite of low substrate selectivity. Early quantum chemical computations in the gas phase have suggested that the retention of positional selectivity at encounter-limited rates could be ascribed to the formation of a radical pair via an electron transfer step occurring before the formation of the Wheland intermediate, but calculations which account for the effects of solvent polarization and the presence of counterion do not support that point of view. Here we report a brief survey of the available experimental and theoretical data, adding a few more computations for better clarifying the role of electron transfer for regioselectivity.
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33
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Xu X, Yan S, Hou X, Song W, Wang L, Wu T, Qi M, Wu J, Rao Y, Wang B, Liu L. Local Electric Field Modulated Reactivity of Pseudomonas aeruginosa Acid Phosphatase for Enhancing Phosphorylation of l-Ascorbic Acid. ACS Catal 2021. [DOI: 10.1021/acscatal.1c04200] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Xin Xu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
| | - Shengheng Yan
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, Xiamen University, Xiamen 360015, P. R. China
| | - Xiaodong Hou
- State Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, P. R. China
| | - Wei Song
- School of Pharmaceutical Science, Jiangnan University, Wuxi 214122, P. R. China
| | - Lei Wang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
| | - Tianfu Wu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
| | - Mengya Qi
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
| | - Jing Wu
- School of Pharmaceutical Science, Jiangnan University, Wuxi 214122, P. R. China
| | - Yijian Rao
- State Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, P. R. China
| | - Binju Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, Xiamen University, Xiamen 360015, P. R. China
| | - Liming Liu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, P. R. China
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34
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Ibrahim MAA, Kamel AAK, Soliman MES, Moustafa MF, El-Mageed HRA, Taha F, Mohamed LA, Moussa NAM. Effect of External Electric Field on Tetrel Bonding Interactions in (FTF 3···FH) Complexes (T = C, Si, Ge, and Sn). ACS OMEGA 2021; 6:25476-25485. [PMID: 34632205 PMCID: PMC8495869 DOI: 10.1021/acsomega.1c03461] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 09/14/2021] [Indexed: 05/13/2023]
Abstract
A quantum chemical study was accomplished on the σ-hole interactions of the barely explored group IV elements, for the first time, in the absence and presence of the positively and negatively directed external electric field (EEF). The analyses of molecular electrostatic potential addressed the occurrence of the σ-hole on all the inspected tetrel atoms, confirming their salient versatility to engage in σ-hole interactions. MP2 energetic findings disclosed the occurrence of favorable σ-hole interactions within the tetrel bonding complexes. The tetrel bonding interactions became stronger in the order of C < Si < Ge < Sn for F-T-F3···FH complexes with the largest interaction energy amounting to -19.43 kcal/mol for the optimized F-Sn-F3···FH complex under the influence of +0.020 au EEF. The interaction energy conspicuously evolved by boosting the magnitude of the positively directed EEF value and declining the negatively directed EEF one. The decomposition analysis for the interaction energies was also executed in terms of symmetry-adapted perturbation theory, illuminating the dominant electrostatic contribution to all the studied complexes' interactions except carbon-based interactions controlled by dispersion forces. The outcomes that emerged from the current work reported significantly how the direction and strength of the EEF affect the tetrel-bonding interactions, leading to further improvements in the forthcoming studies of supramolecular chemistry and materials science.
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Affiliation(s)
- Mahmoud A. A. Ibrahim
- Computational
Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia 61519, Egypt
| | - Afnan A. K. Kamel
- Computational
Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia 61519, Egypt
| | - Mahmoud E. S. Soliman
- Molecular
Bio-computation and Drug Design Lab, School of Health Sciences, University of KwaZulu-Natal, Westville, Durban 4000, South Africa
| | - Mahmoud F. Moustafa
- Department
of Biology, College of Science, King Khalid
University, Abha 9004, Saudi Arabia
- Department
of Botany & Microbiology, Faculty of Science, South Valley University, Qena 83523, Egypt
| | - H. R. Abd El-Mageed
- Micro-Analysis,
Environmental Research and Community Affairs Center (MAESC), Faculty
of Science, Beni-Suef University, Beni-Suef 62511, Egypt
| | - Fouad Taha
- Chemistry
Department, Faculty of Science, Minia University, Minia 61519, Egypt
| | - Lamiaa A. Mohamed
- Chemistry
Department, Faculty of Science, Minia University, Minia 61519, Egypt
| | - Nayra A. M. Moussa
- Computational
Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia 61519, Egypt
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35
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Avdic I, Kempfer-Robertson EM, Thompson LM. Oriented External Electric Field Tuning of Unsubstituted Azoheteroarene Thermal Isomerization Half-Lives. J Phys Chem A 2021; 125:8238-8248. [PMID: 34494847 DOI: 10.1021/acs.jpca.1c06102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Azoheteroarenes are relatively new photoswitchable compounds, where one of the phenyl rings of an azobenzene molecule is replaced by a heteroaromatic five-membered ring. Recent findings on methylated azoheteroarenes show that these photoswitches have potential in various optically addressable applications. The thermal stability of molecular switches is one of the primary factors considered in the design process. For molecular memory or energy storage devices, long thermal relaxation times are required. However, inducing a short thermal isomerization lifetime is required to release stored energy or as an alternative to photoswitching to avoid overlapping absorption spectra that reduce switching fidelity. In this study, we investigate how oriented external electric fields can be used to tune the thermal isomerization properties of three unsubstituted heteroaryl azo compounds-azoimidazole, azopyrazole, and azopyrrole. We show that favorable electric field orientations can increase the thermal half-life of studied molecules by as much as 60 times or reduce it from tens of days to seconds, compared to their half-life values in the field-free environment. A deeper understanding of the relationship between structure and kinetic properties provides insight as to how molecular switches can be designed for their electric field response in switching applications.
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Affiliation(s)
- Irma Avdic
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40208, United States
| | | | - Lee M Thompson
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40208, United States
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36
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Léonard NG, Dhaoui R, Chantarojsiri T, Yang JY. Electric Fields in Catalysis: From Enzymes to Molecular Catalysts. ACS Catal 2021; 11:10923-10932. [DOI: 10.1021/acscatal.1c02084] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Nadia G. Léonard
- Department of Chemistry, University of California, Irvine, California 92697, United States
| | - Rakia Dhaoui
- Department of Chemistry, University of California, Irvine, California 92697, United States
| | - Teera Chantarojsiri
- Department of Chemistry and Center of Excellence for Innovation in Chemistry, Faculty of Science, Mahidol University, Bangkok, 10400, Thailand
| | - Jenny Y. Yang
- Department of Chemistry, University of California, Irvine, California 92697, United States
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37
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Li B, Li Y, Dang Y, Houk KN. Post-Transition State Bifurcation in Iron-Catalyzed Arene Aminations. ACS Catal 2021. [DOI: 10.1021/acscatal.1c01291] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Bo Li
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Department of Chemistry, School of Science, Tianjin University, Tianjin 300072, China
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Yuli Li
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Department of Chemistry, School of Science, Tianjin University, Tianjin 300072, China
| | - Yanfeng Dang
- Tianjin Key Laboratory of Molecular Optoelectronic Sciences, Department of Chemistry, School of Science, Tianjin University, Tianjin 300072, China
| | - K. N. Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
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38
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Ormazábal-Toledo R, Richter S, Robles-Navarro A, Maulén B, Matute RA, Gallardo-Fuentes S. Meisenheimer complexes as hidden intermediates in the aza-S NAr mechanism. Org Biomol Chem 2021; 18:4238-4247. [PMID: 32432594 DOI: 10.1039/d0ob00600a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
In this work we report a computational study about the aza-SNAr mechanism in fluorine- and chlorine-containing azines with the aim to unravel the physical factors that determine the reactivity patterns in these heterocycles towards propylamine. The nature of the reaction intermediate was analyzed in terms of its electronic structure based on a topological analysis framework in some non-stationary points along the reaction coordinate. The mechanistic dichotomy of a concerted or a stepwise pathway is interpreted in terms of the qualitative Diabatic Model of Intermediate Stabilization (DMIS) approach, providing a general mechanistic picture for the SNAr process involving both activated benzenes and nitrogen-containing heterocycles. With the information collected, a unified vision of the Meisenheimer complexes as transition state, hidden intermediate or real intermediate was proposed.
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Affiliation(s)
- Rodrigo Ormazábal-Toledo
- Centro Integrativo de Biología y Química Aplicada (CIBQA), Universidad Bernardo OHiggins, Santiago 8370854, Chile. and Departamento de Química, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Casilla 653, Santiago, Chile.
| | - Sebastián Richter
- Departamento de Química, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Casilla 653, Santiago, Chile.
| | - Andrés Robles-Navarro
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Casilla 653, Santiago, Chile and Centro para el Desarrollo de la Nanociencia y la Nanotecnología (CEDENNA), Avda. Ecuador 3493, 9170124 Santiago, Chile
| | - Boris Maulén
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Casilla 653, Santiago, Chile
| | - Ricardo A Matute
- Centro Integrativo de Biología y Química Aplicada (CIBQA), Universidad Bernardo OHiggins, Santiago 8370854, Chile. and Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Sebastián Gallardo-Fuentes
- Departamento de Química, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Casilla 653, Santiago, Chile.
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39
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Yu S, Vermeeren P, Hamlin TA, Bickelhaupt FM. How Oriented External Electric Fields Modulate Reactivity. Chemistry 2021; 27:5683-5693. [PMID: 33289179 PMCID: PMC8049047 DOI: 10.1002/chem.202004906] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 12/04/2020] [Indexed: 01/27/2023]
Abstract
A judiciously oriented external electric field (OEEF) can catalyze a wide range of reactions and can even induce endo/exo stereoselectivity of cycloaddition reactions. The Diels-Alder reaction between cyclopentadiene and maleic anhydride is studied by using quantitative activation strain and Kohn-Sham molecular orbital theory to pinpoint the origin of these catalytic and stereoselective effects. Our quantitative model reveals that an OEEF along the reaction axis induces an enhanced electrostatic and orbital interaction between the reactants, which in turn lowers the reaction barrier. The stronger electrostatic interaction originates from an increased electron density difference between the reactants at the reactive center, and the enhanced orbital interaction arises from the promoted normal electron demand donor-acceptor interaction driven by the OEEF. An OEEF perpendicular to the plane of the reaction axis solely stabilizes the exo pathway of this reaction, whereas the endo pathway remains unaltered and efficiently steers the endo/exo stereoselectivity. The influence of the OEEF on the inverse electron demand Diels-Alder reaction is also investigated; unexpectedly, it inhibits the reaction, as the electric field now suppresses the critical inverse electron demand donor-acceptor interaction.
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Affiliation(s)
- Song Yu
- Department of Theoretical ChemistryAmsterdam Institute of Molecular and Life Sciences (AIMMS)Amsterdam Center for Multiscale Modeling (ACMM)Vrije Universiteit AmsterdamDe Boelelaan 10831081HVAmsterdamThe Netherlands
| | - Pascal Vermeeren
- Department of Theoretical ChemistryAmsterdam Institute of Molecular and Life Sciences (AIMMS)Amsterdam Center for Multiscale Modeling (ACMM)Vrije Universiteit AmsterdamDe Boelelaan 10831081HVAmsterdamThe Netherlands
| | - Trevor A. Hamlin
- Department of Theoretical ChemistryAmsterdam Institute of Molecular and Life Sciences (AIMMS)Amsterdam Center for Multiscale Modeling (ACMM)Vrije Universiteit AmsterdamDe Boelelaan 10831081HVAmsterdamThe Netherlands
| | - F. Matthias Bickelhaupt
- Department of Theoretical ChemistryAmsterdam Institute of Molecular and Life Sciences (AIMMS)Amsterdam Center for Multiscale Modeling (ACMM)Vrije Universiteit AmsterdamDe Boelelaan 10831081HVAmsterdamThe Netherlands
- Institute for Molecules and Materials (IMM)Radboud UniversityHeyendaalseweg 1356525 AJNijmegenThe Netherlands
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40
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Stuyver T, Shaik S. Promotion Energy Analysis Predicts Reaction Modes: Nucleophilic and Electrophilic Aromatic Substitution Reactions. J Am Chem Soc 2021; 143:4367-4378. [PMID: 33689334 DOI: 10.1021/jacs.1c00307] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
To develop an approach to pre-emptively predict the existence of major reaction modes associated with a chemical system, based on exclusive consideration of reactant properties, we build herein on the valence bond perspective of chemical reactivity. In this perspective, elementary chemical reactions are conceptualized as crossovers between individual diabatic/semilocalized states. As demonstrated, the spacings between the main diabatic states in the reactant geometries-the so-called promotion energies-contain predictive information about which types of crossings are likely to occur on a potential energy surface, facilitating the identification of potential transition states and products. As an added bonus, promotion energy analysis provides direct insight into the impact of environmental effects, e.g., the presence of (polar) solvents and/or (local) electric fields, on a mechanistic landscape. We illustrate the usefulness of our approach by focusing on model nucleophilic and electrophilic aromatic substitution reactions. Overall, we envision our analysis to be useful not only as a tool for conceptualizing individual mechanistic landscapes but also as a facilitator of systematic reaction-network exploration efforts. Because the emerging VB descriptors are computationally inexpensive (and can alternatively be inferred through machine learning), they could be evaluated on-the-fly as part of an exploration algorithm. The so-predicted reaction modes could subsequently be examined in detail through computationally more-demanding methods.
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Affiliation(s)
- Thijs Stuyver
- Institute of Chemistry, The Hebrew University, Jerusalem 91904, Israel
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University, Jerusalem 91904, Israel
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41
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Clarys T, Stuyver T, De Proft F, Geerlings P. Extending conceptual DFT to include additional variables: oriented external electric field. Phys Chem Chem Phys 2021; 23:990-1005. [PMID: 33404573 DOI: 10.1039/d0cp05277a] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The extension of the E = E[N, v] functional for exploring chemical reactivity in a conceptual DFT context to include external electric fields is discussed. Concentrating on the case of a homogeneous field the corresponding response functions are identified and integrated, together with the conventional response functions such as permanent dipole moment and polarizability, in an extended response function tree associated with the E = E[N, v, ε] functional. In a case study on the dihalogens F2, Cl2, Br2, I2 the sensitivity of condensed atomic charges (∂q/∂ε) is linked to the polarizability of the halogen atoms. The non-integrated (∂ρ(r)/∂ε) response function, directly related to the field induced density change, is at the basis of these features. It reveals symmetry breaking for a perpendicular field, not detectable in its atom condensed counterpart, and accounts for the induced dipole moment directly related to the molecular polarizability. The much higher sensitivity of the electronic chemical potential/electronegativity as compared to the chemical hardness is highlighted. The response of the condensed Fukui functions to a parallel electric field increases when going down in the periodic table and is interpreted in terms of the extension of the outer contours in the non-condensed Fukui function. In the case of a perpendicular field the (∂f(r)/∂ε) response function hints at stereoselectivity with a preferential side of attack which is not retrieved in its condensed form. In an application the nucleophilic attack on the carbonyl group in H2CO is discussed. Similar to the dihalogens, stereoselectivity is displayed in the Fukui function for nucleophilic attack (f+) in the case of a perpendicular electric field, and opposite to the one that would arise based on the induced density. Disentangling the expression for the evolution of the Fukui function in the presence of an electric field reveals that this difference can be traced back to local differences in the polarization or induced density between the anionic and the neutral system. This difference may be exploited, e.g. for an appropriately substituted H2CO, to generate enantioselectivity.
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Affiliation(s)
- Tom Clarys
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium.
| | - Thijs Stuyver
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium. and Institute of Chemistry, The Hebrew University, Jerusalem, 91904, Israel
| | - Frank De Proft
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium.
| | - Paul Geerlings
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium.
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42
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Munárriz J, Gallegos M, Contreras-García J, Martín Pendás Á. Energetics of Electron Pairs in Electrophilic Aromatic Substitutions. Molecules 2021; 26:513. [PMID: 33478091 PMCID: PMC7835785 DOI: 10.3390/molecules26020513] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 01/14/2021] [Accepted: 01/16/2021] [Indexed: 11/16/2022] Open
Abstract
The interacting quantum atoms approach (IQA) as applied to the electron-pair exhaustive partition of real space induced by the electron localization function (ELF) is used to examine candidate energetic descriptors to rationalize substituent effects in simple electrophilic aromatic substitutions. It is first shown that inductive and mesomeric effects can be recognized from the decay mode of the aromatic valence bond basin populations with the distance to the substituent, and that the fluctuation of the population of adjacent bonds holds also regioselectivity information. With this, the kinetic energy of the electrons in these aromatic basins, as well as their mutual exchange-correlation energies are proposed as suitable energetic indices containing relevant information about substituent effects. We suggest that these descriptors could be used to build future reactive force fields.
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Affiliation(s)
- Julen Munárriz
- Departamento de Química Física y Analítica, Universidad de Oviedo, 33006 Oviedo, Spain;
| | - Miguel Gallegos
- Departamento de Química Física y Analítica, Universidad de Oviedo, 33006 Oviedo, Spain;
| | | | - Ángel Martín Pendás
- Departamento de Química Física y Analítica, Universidad de Oviedo, 33006 Oviedo, Spain;
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Ibrahim MAA, Saad SMA, Al-Fahemi JH, Mekhemer GAH, Ahmed SA, Shawky AM, Moussa NAM. External electric field effects on the σ-hole and lone-pair hole interactions of group V elements: a comparative investigation. RSC Adv 2021; 11:4022-4034. [PMID: 35424345 PMCID: PMC8694126 DOI: 10.1039/d0ra09765a] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Accepted: 12/31/2020] [Indexed: 11/21/2022] Open
Abstract
σ-hole and lone-pair (lp) hole interactions of trivalent pnicogen-bearing (ZF3) compounds were comparatively scrutinized, for the first time, under field-free and external electric field (EEF) conditions. Conspicuously, the sizes of the σ-hole and lp-hole were increased by applying an EEF along the positive direction, while the sizes of both holes decreased through the reverse EEF direction. The MP2 energetic calculations of ZF3⋯FH/NCH complexes revealed that σ-holes exhibited more impressive interaction energies compared to the lp-holes. Remarkably, the strengths of σ-hole and lp-hole interactions evolved with the increment of the positive value of the considered EEF; i.e., the interaction energy increased as the utilized EEF value increased. Unexpectedly, under field-free conditions, nitrogen-bearing complexes showed superior strength for their lp-hole interactions than phosphorus-bearing complexes. However, the reverse picture was exhibited for the interaction energies of nitrogen- and phosphorus-bearing complexes interacting within lp-holes by applying the high values of a positively directed EEF. These results significantly demonstrate the crucial influence of EEF on the strength of σ-hole and lp-hole interactions, which in turn leads to an omnipresent enhancement for variable fields, including biological simulations and material science.
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Affiliation(s)
- Mahmoud A A Ibrahim
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University Minia 61519 Egypt
| | - Sherif M A Saad
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University Minia 61519 Egypt
| | - Jabir H Al-Fahemi
- Chemistry Department, Faculty of Applied Sciences, Umm Al-Qura University Makkah 21955 Saudi Arabia
| | - Gamal A H Mekhemer
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University Minia 61519 Egypt
| | - Saleh A Ahmed
- Chemistry Department, Faculty of Applied Sciences, Umm Al-Qura University Makkah 21955 Saudi Arabia
- Chemistry Department, Faculty of Science, Assiut University Assiut 71516 Egypt
| | - Ahmed M Shawky
- Science and Technology Unit (STU), Umm Al-Qura University Makkah 21955 Saudi Arabia
- Central Laboratory for Micro-analysis, Minia University Minia 61519 Egypt
| | - Nayra A M Moussa
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University Minia 61519 Egypt
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Ren FD, Shi WJ, Cao DL, Li YX, Zhang DH, Wang XF, Shi ZY. External electric field reduces the explosive sensitivity: a theoretical investigation into the hydrogen transference kinetics of the NH 2NO 2∙∙∙H 2O complex. J Mol Model 2020; 26:351. [PMID: 33241433 DOI: 10.1007/s00894-020-04607-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Accepted: 11/08/2020] [Indexed: 11/25/2022]
Abstract
Controlling the selectivity of detonation initiation reaction to reduce the explosive sensitivity has been a Holy Grail in the field of energetic materials. The effects of the external electric fields on the homolysis of the N-NO2 bond and initiation reaction dynamics of NH2NO2∙∙∙H2O (i.e., intermolecular and 1,3-intramolecular hydrogen transfers) were investigated at the MP2/6-311++G(2d,p) and CCSD/6-311++G(2d,p)//MP2/6-311++G(2d,p) levels. The results show that the N-NO2 bond is not the "trigger linkage." The notable transiliences of the activation energy of the intermolecular hydrogen transfer are found with the field strength of - 0.012 a.u. along the -x-direction, leading to the conversion of the main reaction between the intermolecular and 1,3-intramolecular hydrogen transference. The activation energies of two kinds of the hydrogen transferences are increased under the external electric fields along the -y-direction. In particular, due to the conversion of the main reaction, the activation energies of the overall reaction are increased significantly along the -x-direction, leading to the significant reduced explosive sensitivities. Therefore, by controlling the field strengths and orientations between the "reaction axis" and external electric field along the y- and x-directions, the selectivity of the initiation reaction could be controlled and the explosive sensitivity could be reduced. Employing AIM (atoms in molecules) and surface electrostatic potentials, the origin of the control of reaction selectivity and the reduction of sensitivity is revealed. This work is of great significance to the improvement of the technology that the external electric fields are added safely into the energetic material system to enhance the explosive performance. Graphical abstract.
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Affiliation(s)
- Fu-de Ren
- School of Chemical Engineering and Technology, North University of China, Taiyuan, 030051, China.
| | - Wen-Jing Shi
- Second Hospital of Shanxi Medical University, Taiyuan, 030053, China
| | - Duan-Lin Cao
- School of Chemical Engineering and Technology, North University of China, Taiyuan, 030051, China
| | - Yong-Xiang Li
- School of Chemical Engineering and Technology, North University of China, Taiyuan, 030051, China
| | - De-Hua Zhang
- Shanxi North Jindong Chemical Industries Co., Ltd, Yangquan, 045000, China
| | - Xian-Feng Wang
- Shanxi North Jindong Chemical Industries Co., Ltd, Yangquan, 045000, China
| | - Zhao-Yang Shi
- Shanxi North Jindong Chemical Industries Co., Ltd, Yangquan, 045000, China
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45
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Acosta-Silva C, Bertran J, Branchadell V, Oliva A. Catalytic Effect of Electric Fields on the Kemp Elimination Reactions with Neutral Bases. Chemphyschem 2020; 21:2594-2604. [PMID: 32916041 DOI: 10.1002/cphc.202000667] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 09/02/2020] [Indexed: 11/11/2022]
Abstract
The effect of solvent reaction fields and oriented electric fields on the Kemp elimination reaction between methylamine or imidazole and 5-nitrobenzisoxazole has been theoretically studied. The Kemp reaction is the most widely used for the design of new enzymes. Our results, using the SMD continuous model for solvents, are in quite good agreement with the experimental fact that the rate of the analogous reaction with butylamine is one order of magnitude smaller in water than in acetonitrile. In the case of external electric fields, our results show that they can increase or decrease the energy barrier depending on the magnitude and orientation of the field. A duly oriented electric field may have a notable catalytic effect on the reaction. So, external electric fields and reaction fields due to the medium can contribute to the design of new enzymes. Several factors that must be taken into account to increase the catalytic effect are discussed.
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Affiliation(s)
- Carles Acosta-Silva
- Institut de Física d'Altes Energies (IFAE), The Barcelona Institute of Science and Technology, Campus UAB, 08193, Bellaterra, Spain.,Port d'Informació Científica (PIC), Campus UAB, c/ Albareda s/n, 08193, Bellaterra, Spain
| | - Joan Bertran
- Departament e Química, Universitat Autònoma de Barcelona, 08193, Bellaterra, Spain
| | - Vicenç Branchadell
- Departament e Química, Universitat Autònoma de Barcelona, 08193, Bellaterra, Spain
| | - Antoni Oliva
- Departament e Química, Universitat Autònoma de Barcelona, 08193, Bellaterra, Spain
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Fricke C, Deckers K, Schoenebeck F. Orthogonal Stability and Reactivity of Aryl Germanes Enables Rapid and Selective (Multi)Halogenations. Angew Chem Int Ed Engl 2020; 59:18717-18722. [PMID: 32656881 PMCID: PMC7590071 DOI: 10.1002/anie.202008372] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 07/08/2020] [Indexed: 01/07/2023]
Abstract
While halogenation is of key importance in synthesis and radioimaging, the currently available repertoire is largely designed to introduce a single halogen per molecule. This report makes the selective introduction of several different halogens accessible. Showcased here is the privileged stability of nontoxic aryl germanes under harsh fluorination conditions (that allow selective fluorination in their presence), while displaying superior reactivity and functional-group tolerance in electrophilic iodinations and brominations, outcompeting silanes or boronic esters under rapid and additive-free conditions. Mechanistic experiments and computational studies suggest a concerted electrophilic aromatic substitution as the underlying mechanism.
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Affiliation(s)
- Christoph Fricke
- Institute of Organic ChemistryRWTH Aachen UniversityLandoltweg 152074AachenGermany
| | - Kristina Deckers
- Institute of Organic ChemistryRWTH Aachen UniversityLandoltweg 152074AachenGermany
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Fricke C, Deckers K, Schoenebeck F. Orthogonal Stability and Reactivity of Aryl Germanes Enables Rapid and Selective (Multi)Halogenations. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202008372] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Christoph Fricke
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - Kristina Deckers
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
| | - Franziska Schoenebeck
- Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Germany
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Shaik S, Danovich D, Joy J, Wang Z, Stuyver T. Electric-Field Mediated Chemistry: Uncovering and Exploiting the Potential of (Oriented) Electric Fields to Exert Chemical Catalysis and Reaction Control. J Am Chem Soc 2020; 142:12551-12562. [PMID: 32551571 DOI: 10.1021/jacs.0c05128] [Citation(s) in RCA: 185] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
This Perspective discusses oriented external-electric-fields (OEEF), and other electric-field types, as "smart reagents", which enable in principle control over wide-ranging aspects of reactivity and structure. We discuss the potential of OEEFs to control nonredox reactions and impart rate-enhancement and selectivity. An OEEF along the "reaction axis", which is the direction whereby electronic reorganization converts reactants' to products' bonding, will accelerate reactions, control regioselectivity, induce spin-state selectivity, and elicit mechanistic crossovers. Simply flipping the direction of the OEEF will lead to inhibition. Orienting the OEEF off the reaction axis enables control over stereoselectivity, enantioselectivity, and product selectivity. For polar/polarizable reactants, the OEEF itself will act as tweezers, which orient the reactants and drive their reaction. OEEFs also affect bond-dissociation energies and dissociation modes (covalent vs ionic), as well as alteration of molecular geometries and supramolecular aggregation. The "key" to gaining access to this toolbox provided by OEEFs is microscopic control over the alignment between the molecule and the applied field. We discuss the elegant experimental methods which have been used to verify the theoretical predictions and describe various alternative EEF sources and prospects for upscaling OEEF catalysis in solvents. We also demonstrate the numerous ways in which the OEEF effects can be mimicked by use of (designed) local-electric fields (LEFs), i.e., by embedding charges or dipoles into molecules. LEFs and OEEFs are shown to be equivalent and to obey the same ground rules. Outcomes are exemplified for Diels-Alder cycloadditions, oxidative addition of bonds by transition-metal complexes, H-abstractions by oxo-metal species, ionic cleavage of halogen bonds, methane activation, etc.
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Affiliation(s)
- Sason Shaik
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel
| | - David Danovich
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel
| | - Jyothish Joy
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel
| | - Zhanfeng Wang
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel
| | - Thijs Stuyver
- Institute of Chemistry, Edmond J. Safra Compus at Givat Ram, The Hebrew University, Jerusalem 91904, Israel.,Algemene Chemie, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium
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49
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H-bond catalytic mechanism of aromatic electrophilic substitution between phenol and formaldehyde. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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50
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Paul M, Pathak RK, Pananghat B. Rotatory Response of Molecular Electron Momentum Densities in Linear, Homogeneous Weak Electric Fields: A Topographical Analysis. J Phys Chem A 2020; 124:943-954. [PMID: 31877045 DOI: 10.1021/acs.jpca.9b11356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
One-electron properties for molecules such as electron density, electrostatic potential (ESP), and electron momentum density (EMD) are experimentally tractable quantities, useful in understanding chemical characteristics. In this work, effects of a uniform homogeneous external electric field on some characteristic one-electron properties of simple molecules are analyzed. EMDs and ESPs were used to understand the response of water, hydrogen fluoride, carbon monoxide, chloroacetylene, and ammonia in an electric field. Remarkably, the EMD maxima for these molecules get rotated as the electric field strength is varied. A greater order of change in EMD than in ESP with increasing electric field strength brings out the sensitivity of the EMDs, especially for the valence electronic region, which in the momentum space is mapped onto the vicinity of its origin. The eigenvectors of the EMD Hessian maxima at the momentum-space origin are seen to rotate as a function of increasing field strength, with the extra angular momentum imparted by the field manifesting itself as reconfiguration of the EMD distribution. In the presence of the field, valence states may couple with higher electronic states, leading to a mixing of the states resulting in avoided crossings as a function of the field strength. The avoided crossings legitimately estimate maximal field strength limits for the calculation, prior to ionization.
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Affiliation(s)
- Mishu Paul
- Department of Chemical Sciences , Indian Institute of Science Education and Research (IISER) Mohali , Knowledge City, S. A. S. Nagar , Mohali , Punjab 140306 , India
| | - Rajeev K Pathak
- Department of Physics , Savitribai Phule Pune University (SPPU) , Pune 411007 , India
| | - Balanarayan Pananghat
- Department of Chemical Sciences , Indian Institute of Science Education and Research (IISER) Mohali , Knowledge City, S. A. S. Nagar , Mohali , Punjab 140306 , India
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