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Chu W, Prodromou R, Day KN, Schneible JD, Bacon KB, Bowen JD, Kilgore RE, Catella CM, Moore BD, Mabe MD, Alashoor K, Xu Y, Xiao Y, Menegatti S. Peptides and pseudopeptide ligands: a powerful toolbox for the affinity purification of current and next-generation biotherapeutics. J Chromatogr A 2020; 1635:461632. [PMID: 33333349 DOI: 10.1016/j.chroma.2020.461632] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 10/14/2020] [Accepted: 10/15/2020] [Indexed: 02/08/2023]
Abstract
Following the consolidation of therapeutic proteins in the fight against cancer, autoimmune, and neurodegenerative diseases, recent advancements in biochemistry and biotechnology have introduced a host of next-generation biotherapeutics, such as CRISPR-Cas nucleases, stem and car-T cells, and viral vectors for gene therapy. With these drugs entering the clinical pipeline, a new challenge lies ahead: how to manufacture large quantities of high-purity biotherapeutics that meet the growing demand by clinics and biotech companies worldwide. The protein ligands employed by the industry are inadequate to confront this challenge: while featuring high binding affinity and selectivity, these ligands require laborious engineering and expensive manufacturing, are prone to biochemical degradation, and pose safety concerns related to their bacterial origin. Peptides and pseudopeptides make excellent candidates to form a new cohort of ligands for the purification of next-generation biotherapeutics. Peptide-based ligands feature excellent target biorecognition, low or no toxicity and immunogenicity, and can be manufactured affordably at large scale. This work presents a comprehensive and systematic review of the literature on peptide-based ligands and their use in the affinity purification of established and upcoming biological drugs. A comparative analysis is first presented on peptide engineering principles, the development of ligands targeting different biomolecular targets, and the promises and challenges connected to the industrial implementation of peptide ligands. The reviewed literature is organized in (i) conventional (α-)peptides targeting antibodies and other therapeutic proteins, gene therapy products, and therapeutic cells; (ii) cyclic peptides and pseudo-peptides for protein purification and capture of viral and bacterial pathogens; and (iii) the forefront of peptide mimetics, such as β-/γ-peptides, peptoids, foldamers, and stimuli-responsive peptides for advanced processing of biologics.
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Affiliation(s)
- Wenning Chu
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - Raphael Prodromou
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - Kevin N Day
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - John D Schneible
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - Kaitlyn B Bacon
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - John D Bowen
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - Ryan E Kilgore
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - Carly M Catella
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - Brandyn D Moore
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - Matthew D Mabe
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606
| | - Kawthar Alashoor
- Department of Biochemistry and Biophysics, University of Rochester, Rochester, NY 14642
| | - Yiman Xu
- College of Material Science and Engineering, Donghua University, 201620 Shanghai, People's Republic of China
| | - Yuanxin Xiao
- College of Textile, Donghua University, Songjiang District, Shanghai, 201620, People's Republic of China
| | - Stefano Menegatti
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way room 2-009, Raleigh, NC 27606.
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Trasatti JP, Woo J, Ladiwala A, Cramer S, Karande P. Rational design of peptide affinity ligands for the purification of therapeutic enzymes. Biotechnol Prog 2018; 34:987-998. [DOI: 10.1002/btpr.2637] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Revised: 03/14/2018] [Indexed: 01/27/2023]
Affiliation(s)
- John P. Trasatti
- Department of Chemistry and Chemical Biology; Rensselaer Polytechnic Institute; Troy NY
- Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute; Troy NY
| | - James Woo
- Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute; Troy NY
- Howard Isermann Department of Chemical and Biological Engineering; Rensselaer Polytechnic Institute; Troy NY
| | | | - Steven Cramer
- Department of Chemistry and Chemical Biology; Rensselaer Polytechnic Institute; Troy NY
- Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute; Troy NY
- Howard Isermann Department of Chemical and Biological Engineering; Rensselaer Polytechnic Institute; Troy NY
| | - Pankaj Karande
- Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute; Troy NY
- Howard Isermann Department of Chemical and Biological Engineering; Rensselaer Polytechnic Institute; Troy NY
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Giudicessi SL, Salum ML, Saavedra SL, Martínez-Ceron MC, Cascone O, Erra-Balsells R, Camperi SA. Simple method to assess stability of immobilized peptide ligands against proteases. J Pept Sci 2017; 23:685-692. [DOI: 10.1002/psc.3012] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Revised: 04/24/2017] [Accepted: 04/27/2017] [Indexed: 11/07/2022]
Affiliation(s)
- Silvana L. Giudicessi
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica; Cátedra de Biotecnología; Junín 956 1113 Buenos Aires Argentina
- CONICET-Universidad de Buenos Aires; Instituto de Nanobiotecnología (NANOBIOTEC); Junín 956 1113 Buenos Aires Argentina
| | - María L. Salum
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Química Orgánica. Pabellón II; Ciudad Universitaria; Intendente Güiraldes 2160 1428 Buenos Aires Argentina
- CONICET-Universidad de Buenos Aires, Centro de Investigación en Hidratos de Carbono (CIHIDECAR), Pabellón II; Ciudad Universitaria; Intendente Güiraldes 2160 1428 Buenos Aires Argentina
| | - Soledad L. Saavedra
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica; Cátedra de Biotecnología; Junín 956 1113 Buenos Aires Argentina
| | - María C. Martínez-Ceron
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica; Cátedra de Biotecnología; Junín 956 1113 Buenos Aires Argentina
- CONICET-Universidad de Buenos Aires; Instituto de Nanobiotecnología (NANOBIOTEC); Junín 956 1113 Buenos Aires Argentina
| | - Osvaldo Cascone
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica; Cátedra de Biotecnología; Junín 956 1113 Buenos Aires Argentina
- CONICET-Universidad de Buenos Aires; Instituto de Nanobiotecnología (NANOBIOTEC); Junín 956 1113 Buenos Aires Argentina
| | - Rosa Erra-Balsells
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Química Orgánica. Pabellón II; Ciudad Universitaria; Intendente Güiraldes 2160 1428 Buenos Aires Argentina
- CONICET-Universidad de Buenos Aires, Centro de Investigación en Hidratos de Carbono (CIHIDECAR), Pabellón II; Ciudad Universitaria; Intendente Güiraldes 2160 1428 Buenos Aires Argentina
| | - Silvia A. Camperi
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica; Cátedra de Biotecnología; Junín 956 1113 Buenos Aires Argentina
- CONICET-Universidad de Buenos Aires; Instituto de Nanobiotecnología (NANOBIOTEC); Junín 956 1113 Buenos Aires Argentina
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Buemi MR, De Luca L, Ferro S, Russo E, De Sarro G, Gitto R. Structure-guided design of new indoles as negative allosteric modulators (NAMs) of N-methyl-d-aspartate receptor (NMDAR) containing GluN2B subunit. Bioorg Med Chem 2016; 24:1513-9. [DOI: 10.1016/j.bmc.2016.02.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2015] [Revised: 01/21/2016] [Accepted: 02/13/2016] [Indexed: 11/26/2022]
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Pauli D, Bienz S. Regioselective solid-phase synthesis of N-mono-hydroxylated and N-mono-methylated acylpolyamine spider toxins using an 2-(ortho-nitrophenyl)ethanal-modified resin. Org Biomol Chem 2015; 13:4473-85. [PMID: 25773373 DOI: 10.1039/c5ob00108k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A recently introduced new SPS resin, possessing a 2-(ortho-nitrophenyl)ethanal linker, was used for the regioselective on-resin synthesis of N-mono-hydroxylated and N-mono-methylated polyamine spider toxins of Agelenopsis aperta and Larinioides folium. The polyamine backbones of the target compounds were efficiently constructed from the center by reductive amination of the aldehyde linker, followed by stepwise alkylation and acylation on solid support. Depending on the cleavage conditions, employing either oxidation/Cope elimination or methylation/Hofmann elimination, regioselectively the respective N-hydroxyl or N-methyl products were obtained. Employing this methodology, a number of acylpolyamine spider toxins were synthesized and identified as venom components by UHPLC and ESI-MS/MS.
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Affiliation(s)
- Denise Pauli
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland.
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Neubauer S, Rechenmacher F, Brimioulle R, Di Leva FS, Bochen A, Sobahi TR, Schottelius M, Novellino E, Mas-Moruno C, Marinelli L, Kessler H. Pharmacophoric modifications lead to superpotent αvβ3 integrin ligands with suppressed α5β1 activity. J Med Chem 2014; 57:3410-7. [PMID: 24654918 DOI: 10.1021/jm500092w] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The selective targeting of the αvβ3 integrin subtype without affecting the structurally closely related receptor α5β1 is crucial for understanding the details of their biological and pathological functions and thus of great relevance for diagnostic and therapeutic approaches in cancer treatment. Here, we present the synthesis of highly active RGD peptidomimetics for the αvβ3 integrin with remarkable selectivity against α5β1. Incorporation of a methoxypyridine building block into a ligand scaffold and variation of different functional moieties led to αvβ3-antagonistic activities in the low nanomolar or even subnanomolar range. Furthermore, docking studies were performed to give insights into the binding modes of the novel compounds. The presented library comprises powerful ligands for specific addressing and blocking of the αvβ3 integrin subtype, thereby representing privileged tools for integrin-based personalized medicine.
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Affiliation(s)
- Stefanie Neubauer
- Department Chemie, Institute for Advanced Study (IAS) and Center of Integrated Protein Science (CIPSM), Technische Universität München , Lichtenbergstrasse 4, 85747 Garching, Germany
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The hidden potential of small synthetic molecules and peptides as affinity ligands for bioseparations. ACTA ACUST UNITED AC 2013. [DOI: 10.4155/pbp.13.54] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Zhou J, Matos MC, Murphy PV. Synthesis of a Benzomacrolactone-Based Somatostatin Mimetic. Org Lett 2011; 13:5716-9. [DOI: 10.1021/ol202528k] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jian Zhou
- School of Chemistry, National University of Ireland Galway, University Road, Galway, Ireland, and Centre for Synthesis and Chemical Biology & UCD School of Chemistry and Chemical Biology, University College Dublin, Dublin 4, Ireland
| | - Marie-Christine Matos
- School of Chemistry, National University of Ireland Galway, University Road, Galway, Ireland, and Centre for Synthesis and Chemical Biology & UCD School of Chemistry and Chemical Biology, University College Dublin, Dublin 4, Ireland
| | - Paul V. Murphy
- School of Chemistry, National University of Ireland Galway, University Road, Galway, Ireland, and Centre for Synthesis and Chemical Biology & UCD School of Chemistry and Chemical Biology, University College Dublin, Dublin 4, Ireland
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Sohrabi S, Akbarzadeh A, Norouzian D, Farhangi A, Mortazavi M, Mehrabi MR, Chiani M, Saffari Z, Ghassemi S. Production and Purification of Rabbit's Polyclonal Antibody Against Factor VIII. Indian J Clin Biochem 2011; 26:354-9. [PMID: 23024470 DOI: 10.1007/s12291-011-0142-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2011] [Accepted: 04/30/2011] [Indexed: 11/30/2022]
Abstract
The attempt is made to produce recombinant factor VIII but the first step in producing such product is production and purification of rabbit's polyclonal antibody against factor VIII. The second and third steps involve monoclonal antibody and recombinant factor VIII production. Factor VIII is one of the most important coagulating factor where its deficiency leads to diseases like hemophilia type A or classic. It is an inherited disease. Previously, it was obtained through fractionation of blood plasma of blood donors. After processing, factor VIII could be used to manage such patients. Due to transfer of viral disease like hepatitis and HIV through factor VIII obtained by fractionation, high cost of production, insufficiency of the donors and the process of virus removal, thus production of factor VIII through recombinant technology can be useful and helpful. The reaction between antibody and antigen is one the most specific reaction; therefore, such reaction can be employed to identify factor VIII. Thereby, rabbits were injected several times with adjuvant-linked antigen to produce antibody. The antibody was separated from the blood sample, purified and used to identify factor VIII in the research.
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The first design and synthesis of [11C]MKC-1 ([11C]Ro 31-7453), a new potential PET cancer imaging agent. Nucl Med Biol 2010; 37:763-75. [DOI: 10.1016/j.nucmedbio.2010.04.186] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2010] [Accepted: 04/23/2010] [Indexed: 11/17/2022]
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McCue JT, Selvitelli K, Walker J. Application of a novel affinity adsorbent for the capture and purification of recombinant Factor VIII compounds. J Chromatogr A 2009; 1216:7824-30. [DOI: 10.1016/j.chroma.2009.09.045] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2009] [Revised: 09/14/2009] [Accepted: 09/17/2009] [Indexed: 10/20/2022]
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12
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Development of a small molecule peptidomimetic affinity Ligand for efficient purification of the large protein Factor VIII. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2009; 611:151-2. [DOI: 10.1007/978-0-387-73657-0_68] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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13
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Sellarajah S, Boussard C, Lekishvili T, Brown DR, Gilbert IH. Synthesis and testing of peptides for anti-prion activity. Eur J Med Chem 2008; 43:2418-27. [DOI: 10.1016/j.ejmech.2008.01.041] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2007] [Revised: 01/10/2008] [Accepted: 01/18/2008] [Indexed: 11/25/2022]
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