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Ishihara K, Shioiri T, Matsugi M. Synthesis of carbamoyl azides via the Lossen rearrangement utilizing diphenyl phosphorazidate. Tetrahedron Lett 2022. [DOI: 10.1016/j.tetlet.2022.153727] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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2
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Transfer of photochemistry from UV to visible: An expedient access to a bridged pyrrolidine. Tetrahedron Lett 2021. [DOI: 10.1016/j.tetlet.2021.153447] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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3
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Varenikov A, Shapiro E, Gandelman M. Decarboxylative Halogenation of Organic Compounds. Chem Rev 2021; 121:412-484. [PMID: 33200917 PMCID: PMC7884003 DOI: 10.1021/acs.chemrev.0c00813] [Citation(s) in RCA: 89] [Impact Index Per Article: 29.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Indexed: 12/13/2022]
Abstract
Decarboxylative halogenation, or halodecarboxylation, represents one of the fundamental key methods for the synthesis of ubiquitous organic halides. The method is based on conversion of carboxylic acids to the corresponding organic halides via selective cleavage of a carbon-carbon bond between the skeleton of the molecule and the carboxylic group and the liberation of carbon dioxide. In this review, we discuss and analyze major approaches for the conversion of alkanoic, alkenoic, acetylenic, and (hetero)aromatic acids to the corresponding alkyl, alkenyl, alkynyl, and (hetero)aryl halides. These methods include the preparation of families of valuable organic iodides, bromides, chlorides, and fluorides. The historic and modern methods for halodecarboxylation reactions are broadly discussed, including analysis of their advantages and drawbacks. We critically address the features, reaction selectivity, substrate scopes, and limitations of the approaches. In the available cases, mechanistic details of the reactions are presented, and the generality and uniqueness of the different mechanistic pathways are highlighted. The challenges, opportunities, and future directions in the field of decarboxylative halogenation are provided.
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Affiliation(s)
- Andrii Varenikov
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Technion City, Haifa 3200008, Israel
| | - Evgeny Shapiro
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Technion City, Haifa 3200008, Israel
| | - Mark Gandelman
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Technion City, Haifa 3200008, Israel
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4
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Hu Z, Lin G, Sender M, Cannon KC, Davis FA, Krow GR. C6-Substituted methanopyrrolidine β-amino acid: synthesis and characterization of oligomeric foldamers. Tetrahedron Lett 2020. [DOI: 10.1016/j.tetlet.2020.152240] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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5
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Levterov VV, Michurin O, Borysko PO, Zozulya S, Sadkova IV, Tolmachev AA, Mykhailiuk PK. Photochemical In-Flow Synthesis of 2,4-Methanopyrrolidines: Pyrrolidine Analogues with Improved Water Solubility and Reduced Lipophilicity. J Org Chem 2018; 83:14350-14361. [PMID: 30358395 DOI: 10.1021/acs.joc.8b02071] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
A practical synthesis of 2,4-methanopyrrolidines was elaborated. The key synthetic step was an intramolecular photochemical [2 + 2]-cycloaddition of an acrylic acid derivative in flow. In spite of a higher molecular weight, 2,4-methanopyrrolidines were shown to have higher solubility in water and lower lipophilicity than pyrrolidines, important characteristics of bioactive molecules in drug design.
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Affiliation(s)
- Vadym V Levterov
- Enamine, Ltd. , Chervonotkatska 78 , Kyiv 02094 , Ukraine (www.enamine.net)
| | - Oleg Michurin
- Enamine, Ltd. , Chervonotkatska 78 , Kyiv 02094 , Ukraine (www.enamine.net)
| | - Petro O Borysko
- Bienta, Chervonotkatska 78 , Kyiv 02094 , Ukraine (www.bienta.net)
| | - Sergey Zozulya
- Bienta, Chervonotkatska 78 , Kyiv 02094 , Ukraine (www.bienta.net)
| | - Iryna V Sadkova
- Enamine, Ltd. , Chervonotkatska 78 , Kyiv 02094 , Ukraine (www.enamine.net)
| | - Andrey A Tolmachev
- Enamine, Ltd. , Chervonotkatska 78 , Kyiv 02094 , Ukraine (www.enamine.net).,Department of Chemistry , Taras Shevchenko National University of Kyiv , Volodymyrska 64 , Kyiv 01601 , Ukraine (www.mykhailiukchem.org)
| | - Pavel K Mykhailiuk
- Enamine, Ltd. , Chervonotkatska 78 , Kyiv 02094 , Ukraine (www.enamine.net).,Department of Chemistry , Taras Shevchenko National University of Kyiv , Volodymyrska 64 , Kyiv 01601 , Ukraine (www.mykhailiukchem.org)
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7
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A compendium of cyclic sugar amino acids and their carbocyclic and heterocyclic nitrogen analogues. Amino Acids 2013; 45:613-89. [DOI: 10.1007/s00726-013-1521-1] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2013] [Accepted: 05/21/2013] [Indexed: 12/19/2022]
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8
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Okamura TA, Ushijima Y, Omi Y, Onitsuka K. Systematic Investigation of Relationship between Strength of NH···S Hydrogen Bond and Reactivity of Molybdoenzyme Models. Inorg Chem 2012; 52:381-94. [DOI: 10.1021/ic302149p] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Taka-aki Okamura
- Department
of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Yasuhito Ushijima
- Department
of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Yui Omi
- Department
of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Kiyotaka Onitsuka
- Department
of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
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9
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Krow GR, Shoulders MD, Edupuganti R, Gandla D, Yu F, Sonnet PE, Sender M, Choudhary A, DeBrosse C, Ross CW, Carroll P, Raines RT. Synthesis of 5-fluoro- and 5-hydroxymethanoprolines via lithiation of N-BOC-methanopyrrolidines. Constrained Cγ-exo and Cγ-endo Flp and Hyp conformer mimics. J Org Chem 2012; 77:5331-44. [PMID: 22607128 PMCID: PMC3381989 DOI: 10.1021/jo300700a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Proline derivatives with a C(γ)-exo pucker typically display a high amide bond trans/cis (K(T/C)) ratio. This pucker enhances n→π* overlap of the amide oxygen and ester carbonyl carbon, which favors a trans amide bond. If there were no difference in n→π* interaction between the ring puckers, then the correlation between ring pucker and K(T/C) might be broken. To explore this possibility, proline conformations were constrained using a methylene bridge. We synthesized discrete gauche and anti 5-fluoro- and 5-hydroxy-N-acetylmethanoproline methyl esters from 3-syn and 3-anti fluoro- and hydroxymethanopyrrolidines using directed α-metalation to introduce the α-ester group. NBO calculations reveal minimal n→π* orbital interactions, so contributions from other forces might be of greater importance in determining K(T/C) for the methanoprolines. Consistent with this hypothesis, greater trans amide preferences were found in CDCl(3) for anti isomers en-MetFlp and en-MetHyp (72-78% trans) than for the syn stereoisomers ex-MetFlp and ex-MetHyp (54-67% trans). These, and other, K(T/C) results that we report here indicate how substituents on proline analogues can affect amide preferences by pathways other than ring puckering and n→π* overlap and suggest that caution should be exercised in assigning enhanced pyrrolidine C(γ)-exo ring puckering based solely on enhanced trans amide preference.
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Affiliation(s)
- Grant R Krow
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA.
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10
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Krow GR, Yu F, Sender M, Gandla D, Lin G, DeBrosse C, Ross CW. Introduction of C(5/6) side chains onto 2-azabicyclo[2.1.1]hexanes via a 6-anti-bromo-5-anti-hydroxy derivative. CAN J CHEM 2012. [DOI: 10.1139/v11-112] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Oxidation of the title bromoalcohol provided the strained ketone, 5-bromo-6-oxo-2-azabicyclo[2.1.1]hexane. Additions of nucleophiles to either this or the debrominated ketone have been used to introduce 5(6)-syn-alkyl and aryl groups, 5(6)-alkylidene linkages, and 5(6)-anti-alkyl and acyl substituents. Facial selectivity is for additions to the 6-bromo-5-ketone and 5-alkylidene azabicycles to occur from the face syn to the nitrogen atom. The bromine atom of the title alcohol has also been replaced by a 6-anti-(1-hydroxyethyl) substituent using a directed radical addition process. The stereoselective functionalization reactions expand the range of available methano-bridged pyrrolidines.
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Affiliation(s)
- Grant R. Krow
- Department of Chemistry, Temple University, Philadelphia, PA 19122, USA
| | - Fang Yu
- Department of Chemistry, Temple University, Philadelphia, PA 19122, USA
| | - Matthew Sender
- Department of Chemistry, Temple University, Philadelphia, PA 19122, USA
| | - Deepa Gandla
- Department of Chemistry, Temple University, Philadelphia, PA 19122, USA
| | - Guoliang Lin
- Department of Chemistry, Temple University, Philadelphia, PA 19122, USA
| | - Charles DeBrosse
- Department of Chemistry, Temple University, Philadelphia, PA 19122, USA
| | - Charles W. Ross
- Department of Medicinal Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, PA 19486-004, USA
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11
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Grygorenko OO, Radchenko DS, Volochnyuk DM, Tolmachev AA, Komarov IV. Bicyclic Conformationally Restricted Diamines. Chem Rev 2011; 111:5506-68. [DOI: 10.1021/cr100352k] [Citation(s) in RCA: 80] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Oleksandr O. Grygorenko
- Kyiv National Taras Shevchenko University, Volodymyrska Street, 64, Kyiv 01601, Ukraine
- Enamine Ltd., Alexandra Matrosova Street, 23, Kyiv 01103, Ukraine
| | - Dmytro S. Radchenko
- Kyiv National Taras Shevchenko University, Volodymyrska Street, 64, Kyiv 01601, Ukraine
- Enamine Ltd., Alexandra Matrosova Street, 23, Kyiv 01103, Ukraine
| | | | - Andrey A. Tolmachev
- Kyiv National Taras Shevchenko University, Volodymyrska Street, 64, Kyiv 01601, Ukraine
- Enamine Ltd., Alexandra Matrosova Street, 23, Kyiv 01103, Ukraine
| | - Igor V. Komarov
- Kyiv National Taras Shevchenko University, Volodymyrska Street, 64, Kyiv 01601, Ukraine
- Enamine Ltd., Alexandra Matrosova Street, 23, Kyiv 01103, Ukraine
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12
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Krow GR, Edupuganti R, Gandla D, Yu F, Sender M, Sonnet PE, Zdilla MJ, DeBrosse C, Cannon KC, Ross CW, Choudhary A, Shoulders MD, Raines RT. Synthesis of conformationally constrained 5-fluoro- and 5-hydroxymethanopyrrolidines. Ring-puckered mimics of gauche- and anti-3-fluoro- and 3-hydroxypyrrolidines. J Org Chem 2011; 76:3626-34. [PMID: 21500838 PMCID: PMC3304449 DOI: 10.1021/jo200117p] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
N-acetylmethanopyrrolidine methyl ester and its four 5-syn/anti-fluoro and hydroxy derivatives have been synthesized from 2-azabicyclo[2.2.0]hex-5-ene, a 1,2-dihydropyridine photoproduct. These conformationally constrained mimics of idealized C(β)-gauche and C(β)-anti conformers of pyrrolidines were prepared in order to determine the inherent bridge bias and subsequent heteroatom substituent effects upon trans/cis amide preferences. The bridgehead position and also the presence of gauche(syn)/anti-5-fluoro or 5-hydroxy substituents have minimal influence upon the K(T/C) values of N-acetylamide conformers in both CDCl(3) (43-54% trans) and D(2)O (53-58% trans). O-Benzoylation enhances the trans amide preferences in CDCl(3) (65% for a syn-OBz, 61% for an anti-OBz) but has minimal effect in D(2)O. The synthetic methods developed for N-BOC-methanopyrrolidines should prove useful in the synthesis of more complex derivatives containing α-ester substituents. The K(T/C) results obtained in this study establish baseline amide preferences that will enable determination of contributions of α-ester substituents to trans-amide preferences in methanoprolines.
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Affiliation(s)
- Grant R Krow
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States.
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13
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Krow GR, Edupuganti R, Gandla D, Choudhary A, Lin G, Sonnet PE, DeBrosse C, Ross CW, Cannon KC, Raines RT. 5(6)-anti-Substituted-2-azabicyclo[2.1.1]hexanes: a nucleophilic displacement route. J Org Chem 2009; 74:8232-42. [PMID: 19799411 PMCID: PMC3374851 DOI: 10.1021/jo901725k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Nucleophilic displacements of 5(6)-anti-bromo substituents in 2-azabicyclo[2.1.1]hexanes (methanopyrrolidines) have been accomplished. These displacements have produced 5-anti-X-6-anti-Y-difunctionalized-2-azabicyclo[2.1.1]hexanes containing bromo, fluoro, acetoxy, hydroxy, azido, imidazole, thiophenyl, and iodo substituents. Such displacements of anti-bromide ions require an amine nitrogen and are a function of the solvent and the choice of metal salt. Reaction rates were faster and product yields were higher in DMSO when compared to DMF and with CsOAc compared to NaOAc. Sodium or lithium salts gave products, except with NaF, where silver fluoride in nitromethane was best for substitution by fluoride. The presence of electron-withdrawing F, OAc, N(3), Br, or SPh substituents in the 6-anti-position slows bromide displacements at the 5-anti-position.
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Affiliation(s)
- Grant R Krow
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA.
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14
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Gorres KL, Edupuganti R, Krow GR, Raines RT. Conformational preferences of substrates for human prolyl 4-hydroxylase. Biochemistry 2008; 47:9447-55. [PMID: 18702512 PMCID: PMC2810141 DOI: 10.1021/bi8009373] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Prolyl 4-hydroxylase (P4H) catalyzes the posttranslational hydroxylation of (2 S)-proline (Pro) residues in procollagen strands. The resulting (2 S,4 R)-4-hydroxyproline (Hyp) residues are essential for the folding, secretion, and stability of the collagen triple helix. Even though its product (Hyp) differs from its substrate (Pro) by only a single oxygen atom, no product inhibition has been observed for P4H. Here, we examine the basis for the binding and turnover of substrates by human P4H. Synthetic peptides containing (2 S,4 R)-4-fluoroproline (Flp), (2 S,4 S)-4-fluoroproline (flp), (2 S)-4-ketoproline (Kep), (2 S)-4-thiaproline (Thp), and 3,5-methanoproline (Mtp) were evaluated as substrates for P4H. Peptides containing Pro, flp, and Thp were found to be excellent substrates for P4H, forming Hyp, Kep, and (2 S,4 R)-thiaoxoproline, respectively. Thus, P4H is tolerant to some substitutions on C-4 of the pyrrolidine ring. In contrast, peptides containing Flp, Kep, or Mtp did not even bind to the active site of P4H. Each proline analogue that does bind to P4H is also a substrate, indicating that discrimination occurs at the level of binding rather than turnover. As the iron(IV)-oxo species that forms in the active site of P4H is highly reactive, P4H has an imperative for forming a snug complex with its substrate and appears to do so. Most notably, those proline analogues with a greater preference for a C (gamma)- endo pucker and cis peptide bond were the ones recognized by P4H. As Hyp has a strong preference for C (gamma)- exo pucker and trans peptide bond, P4H appears to discriminate against the conformation of proline residues in a manner that diminishes product inhibition during collagen biosynthesis.
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Affiliation(s)
- Kelly L. Gorres
- Department of Biochemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706
| | - Ram Edupuganti
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122
| | - Grant R. Krow
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122
| | - Ronald T. Raines
- Department of Biochemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706
- Department of Chemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706
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