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Zhang H, Wang J, Dong B, Xu F, Liu H, Zhang Q, Zong W, Shi X. New mechanism for the participation of aromatic oxidation products in atmospheric nucleation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 917:170487. [PMID: 38296079 DOI: 10.1016/j.scitotenv.2024.170487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 01/03/2024] [Accepted: 01/24/2024] [Indexed: 02/03/2024]
Abstract
Oxygenated organic molecules (OOMs) are recognized as important precursors for new particle formation (NPF) in the urban atmosphere. The paper theoretically studied the formation of OOMs by styrene oxidation processes initiated by OH radicals, focusing on the OOMs nucleation mechanism. The results found that in the presence of an H2SO4 molecule, lowly oxygenated organic molecules containing a benzene ring (LOMBs) can form stable clusters and grow to the scale of a critical nucleus through pi-pi stacking and OH hydrogen bonding. In addition, LOMBs are more readily generated in a styrene-oxidized system in the presence/absence of NOx than highly oxygenated organic molecules (HOMs). The reaction of OH radicals with other aromatics containing a branched chain on the benzene ring produces LOMBs to varying degrees, with pi-pi stacking playing an essential role. This result suggests that, in the presence of H2SO4 molecules, LOMBs may play a more significant role in promoting nucleation than HOMs. Our findings serve as a pivotal foundation for future investigations into the oxidation and nucleation processes of diverse aromatics in urban environments.
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Affiliation(s)
- Huidi Zhang
- College of Geography and Environment, Shandong Normal University, Jinan 250014, PR China
| | - Juanbao Wang
- College of Geography and Environment, Shandong Normal University, Jinan 250014, PR China
| | - Biao Dong
- College of Geography and Environment, Shandong Normal University, Jinan 250014, PR China
| | - Fei Xu
- Environment Research Institute, Shandong University, Qingdao 266237, PR China
| | - Houfeng Liu
- College of Geography and Environment, Shandong Normal University, Jinan 250014, PR China
| | - Qingzhu Zhang
- Environment Research Institute, Shandong University, Qingdao 266237, PR China
| | - Wansong Zong
- College of Geography and Environment, Shandong Normal University, Jinan 250014, PR China
| | - Xiangli Shi
- College of Geography and Environment, Shandong Normal University, Jinan 250014, PR China.
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2
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Song G, Bozzelli JW. Reaction kinetics and thermochemistry of the chemically activated and stabilized primary ethyl radical of methyl ethyl sulfide, CH
3
SCH
2
CH
2
•, with O
2
to CH
3
SCH
2
CH
2
OO•. INT J CHEM KINET 2019. [DOI: 10.1002/kin.21283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Guanghui Song
- Department of ChemicalBiological and Pharmaceutical EngineeringNew Jersey Institute of Technology Newark New Jersey
| | - Joseph W Bozzelli
- Department of ChemicalBiological and Pharmaceutical EngineeringNew Jersey Institute of Technology Newark New Jersey
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3
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Understanding the oxidation mechanism of methanesulfinic acid by ozone in the atmosphere. Sci Rep 2019; 9:322. [PMID: 30674895 PMCID: PMC6344471 DOI: 10.1038/s41598-018-36405-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Accepted: 11/19/2018] [Indexed: 11/18/2022] Open
Abstract
Methanesulfinic acid (MSIA) is an important intermediate in the oxidation of dimethyl sulfide (DMS) in the marine boundary layer. The oxidation of MSIA by ozone in the gas phase to form methanesulfonic acid (MSA) was investigated using theoretical calculations in this paper. Three pathways can be found for the reaction of MSIA with ozone. The highest energy barrier is 13.02 kcal mol−1 in the most favorable pathway. By comparing the reaction rate of MSIA + O3 with that of MSIA + OH, it can be concluded that the oxidation of MSIA by O3 to form MSA is of minor significance relative to its oxidation by OH radical in the gas phase. This study can provide some information for the theoretical and experimental studies in the significantly heterogeneous and aqueous-phase oxidation of MSIA by O3.
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4
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Sai N, Leung K, Zádor J, Henkelman G. First principles study of photo-oxidation degradation mechanisms in P3HT for organic solar cells. Phys Chem Chem Phys 2014; 16:8092-9. [DOI: 10.1039/c4cp00146j] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a theoretical study of degradation mechanisms for photoinduced oxidation in organic polymers in the condensed phase, using poly(3-hexylthiophene) (P3HT) as an example.
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Affiliation(s)
- Na Sai
- Energy Frontier Research Center (EFRC:CST) and Institute for Computational Engineering and Sciences
- The University of Texas at Austin
- Austin, USA
- Department of Physics
- The University of Texas at Austin
| | | | | | - Graeme Henkelman
- Energy Frontier Research Center (EFRC:CST) and Institute for Computational Engineering and Sciences
- The University of Texas at Austin
- Austin, USA
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5
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RamíRez-Anguita JM, González-Lafont À, Lluch JM. Variational transition-state theory study of the rate constant of the DMS·OH scavenging reaction by O2. J Comput Chem 2011; 32:2104-18. [DOI: 10.1002/jcc.21793] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2011] [Revised: 02/12/2011] [Accepted: 02/25/2011] [Indexed: 11/12/2022]
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6
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A theoretical study of the DMS·OH scavenging reaction by OH. Its relevance in DMSO formation. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2010.12.022] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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7
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Zhang H, Zhang GL, Liu JY, Sun M, Liu B, Li ZS. Theoretical studies on the reactions CH3SCH3 with OH, CF3, and CH3 radicals. J Comput Chem 2010; 31:2794-803. [DOI: 10.1002/jcc.21572] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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8
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Ramírez-Anguita JM, González-Lafont À, Lluch JM. Formation pathways of CH3SOH from CH3S(OH)CH3 in the presence of O2: a theoretical study. Theor Chem Acc 2009. [DOI: 10.1007/s00214-009-0547-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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9
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Ramírez-Anguita JM, González-Lafont À, Lluch JM. Formation pathways of DMSO from DMS-OH in the presence of O2and NOx: A theoretical study. J Comput Chem 2009; 30:173-82. [DOI: 10.1002/jcc.21049] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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10
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Aschmann SM, Tuazon EC, Long WD, Atkinson R. Kinetics and Products of the Gas-Phase Reactions of Divinyl Sulfoxide with OH and NO3 Radicals and O3. J Phys Chem A 2008; 112:8723-30. [DOI: 10.1021/jp803223e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Sara M. Aschmann
- Air Pollution Research Center, University of California, Riverside, California 92521
| | - Ernesto C. Tuazon
- Air Pollution Research Center, University of California, Riverside, California 92521
| | - William D. Long
- Air Pollution Research Center, University of California, Riverside, California 92521
| | - Roger Atkinson
- Air Pollution Research Center, University of California, Riverside, California 92521
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11
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Bergès J, Varmenot N, Scemama A, Abedinzadeh Z, Bobrowski K. Energies, Stability and Structure Properties of Radicals Derived from Organic Sulfides Containing an Acetyl Group after the •OH Attack: ab Initio and DFT Calculations vs Experiment. J Phys Chem A 2008; 112:7015-26. [DOI: 10.1021/jp711944v] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jacqueline Bergès
- LCT, UMR 7616, Université Pierre et Marie Curie, 4 Place Jussieu, 75230 Paris Cedex 5 France, Université René Descartes, 45, rue des Saints Pères, 75006 Paris, France, Laboratoire de Chimie Physique, UMR 8601 CNRS, Université Paris Descartes, 45, rue des Saints Pères, 75006 Paris, France, and Institute of Nuclear Chemistry and Technology, Dorodna 16, 03-195 Warsaw, Poland
| | - Nicolas Varmenot
- LCT, UMR 7616, Université Pierre et Marie Curie, 4 Place Jussieu, 75230 Paris Cedex 5 France, Université René Descartes, 45, rue des Saints Pères, 75006 Paris, France, Laboratoire de Chimie Physique, UMR 8601 CNRS, Université Paris Descartes, 45, rue des Saints Pères, 75006 Paris, France, and Institute of Nuclear Chemistry and Technology, Dorodna 16, 03-195 Warsaw, Poland
| | - Anthony Scemama
- LCT, UMR 7616, Université Pierre et Marie Curie, 4 Place Jussieu, 75230 Paris Cedex 5 France, Université René Descartes, 45, rue des Saints Pères, 75006 Paris, France, Laboratoire de Chimie Physique, UMR 8601 CNRS, Université Paris Descartes, 45, rue des Saints Pères, 75006 Paris, France, and Institute of Nuclear Chemistry and Technology, Dorodna 16, 03-195 Warsaw, Poland
| | - Zohreh Abedinzadeh
- LCT, UMR 7616, Université Pierre et Marie Curie, 4 Place Jussieu, 75230 Paris Cedex 5 France, Université René Descartes, 45, rue des Saints Pères, 75006 Paris, France, Laboratoire de Chimie Physique, UMR 8601 CNRS, Université Paris Descartes, 45, rue des Saints Pères, 75006 Paris, France, and Institute of Nuclear Chemistry and Technology, Dorodna 16, 03-195 Warsaw, Poland
| | - Krzysztof Bobrowski
- LCT, UMR 7616, Université Pierre et Marie Curie, 4 Place Jussieu, 75230 Paris Cedex 5 France, Université René Descartes, 45, rue des Saints Pères, 75006 Paris, France, Laboratoire de Chimie Physique, UMR 8601 CNRS, Université Paris Descartes, 45, rue des Saints Pères, 75006 Paris, France, and Institute of Nuclear Chemistry and Technology, Dorodna 16, 03-195 Warsaw, Poland
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12
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Madsen MS, Gross A, Falsig H, Kongsted J, Osted A, Mikkelsen KV, Christiansen O. Determination of rate constants for the uptake process involving SO2 and an aerosol particle. A quantum mechanics/molecular mechanics and quantum statistical investigation. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2008.02.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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13
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From Molecules to Droplets. ADVANCES IN QUANTUM CHEMISTRY 2008. [DOI: 10.1016/s0065-3276(07)00217-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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14
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Cruz-Torres A, Galano A. On the Mechanism of Gas-Phase Reaction of C1−C3 Aliphatic Thiols + OH Radicals. J Phys Chem A 2007; 111:1523-9. [PMID: 17279738 DOI: 10.1021/jp0673415] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A theoretical study on the mechanism of the OH + aliphatic thiols reactions is presented. Optimum geometries and frequencies have been computed at the BHandHLYP/6-311++G(2d,2p) level of theory for all stationary points. Energy values have been improved by single-point calculations at the above geometries using CCSD(T)/6-311++G(d,p). Twelve possible channels have been modeled, three of them including the possible influence of molecular oxygen, and three of them involving excess of OH. The only channels that have been found to significantly contribute to the overall reaction in the troposphere are the hydrogen abstractions from the -SH group and from the alkyl groups. Our analysis supports a stepwise mechanism involving the formation of a short-lived, weakly bonded adduct in the entrance channel, for the abstraction paths. The results proposed in the present work seem to provide a viable explanation for diverse findings previously reported from experimental investigations.
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Affiliation(s)
- Armando Cruz-Torres
- Instituto Mexicano del Petróleo, Eje Central LAzaro CArdenas 152, 07730, México D. F., México
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15
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Williams MB, Campuzano-Jost P, Cossairt BM, Hynes AJ, Pounds AJ. Experimental and Theoretical Studies of the Reaction of the OH Radical with Alkyl Sulfides: 1. Direct Observations of the Formation of the OH−DMS Adduct−Pressure Dependence of the Forward Rate of Addition and Development of a Predictive Expression at Low Temperature. J Phys Chem A 2007; 111:89-104. [PMID: 17201392 DOI: 10.1021/jp063873+] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A pulsed laser photolysis-pulsed laser-induced fluorescence (PLP-PLIF) system was employed to study the kinetics and mechanisms of reactions (1) OH + h6-DMS --> products and (2) OH + d6-DMS --> products. We report direct observations of the rate coefficients for the formation and dissociation of the h6-OHDMS and d6-OHDMS adducts over the pressure range 50-650 Torr and between 240 and 245 K, together with measurements of the oxygen dependence of the effective rate coefficients for reactions 1 and 2 under similar conditions. The effective rate coefficients increased as a function of O2 concentration reaching their limiting values in each case. The values of the adduct formation rate, obtained from the O2 dependencies, were in excellent agreement with values determined from direct observation of adduct equilibration in N2. OH regeneration is insignificant. The rate coefficients for the formation of the adduct isotopomers showed slight differences in their falloff behavior and do not approach the high-pressure limit in either case. The equilibrium constants obtained show no dependence on isotopomer and are in good agreement with previous work. A "second-law" analysis of the temperature dependence of the equilibrium constant gives an adduct bond strength (DeltaH degrees =-10.9 +/- 1.0 kcal mol(-1)), also in good agreement with previously reported values. Using the entropy calculated from the ab initio vibrational frequencies, we obtain a "third-law" value for the reaction enthalpy at 240 K, DeltaH(240K) degrees = -10.5 kcal mol(-1) in good agreement with the other approach. The rate coefficient for the reactions of the adducts with O2 was obtained from an analysis of the O2 dependence and was determined to be 6.3 +/- 1.2 x 10(-13) cm3 molecule(-1) s(-1), with no dependence on pressure or isotopomer. The pressure and temperature dependence for all of the elementary processes in the initial steps of the dimethylsulfide (DMS) oxidation mechanism have been characterized in the range 238-245 K, allowing the formulation of an expression which can be used to calculate the effective rate coefficient for reaction 1 at any pressure and oxygen concentration. The expression can calculate the effective rate coefficient for reaction 1 to +/- 40% over the range 220-260 K, with the largest errors at the extremes of this range. Gaussian 03 has been used to calculate the structure of the OH-DMS adduct and its deuterated isotopomer. We find similar bound structures for both isotopomers. The calculated enthalpies of formation of the adducts are lower than the experimentally determined values.
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Affiliation(s)
- M B Williams
- Division of Marine and Atmospheric Chemistry, Rosenstiel School of Marine and Atmospheric Science at the University of Miami, 4600 Rickenbacker Causeway, Miami, Florida 33149, USA
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17
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Uchimaru T, Tsuzuki S, Sugie M, Tokuhashi K, Sekiya A. A theoretical study on the strength of two-center three-electron bonds in the NO3 radical adducts of reduced sulfur molecules, H2S, CH3SH, CH3SCH3, and CH3SSCH3. Chem Phys 2006. [DOI: 10.1016/j.chemphys.2005.11.018] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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18
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Barnes I, Hjorth J, Mihalopoulos N. Dimethyl Sulfide and Dimethyl Sulfoxide and Their Oxidation in the Atmosphere. Chem Rev 2006; 106:940-75. [PMID: 16522014 DOI: 10.1021/cr020529+] [Citation(s) in RCA: 207] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ian Barnes
- Bergische Universität Wuppertal, FB C-Physikalische Chemie, Gauss Strasse 20, 42119 Wuppertal, Germany
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19
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Uchimaru T, Tsuzuki S, Sugie M, Tokuhashi K, Sekiya A. A theoretical study on the strength of two-center three-electron bond in (CH3)2S–OH and H2S–OH adducts. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.04.063] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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20
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El-Nahas AM, Uchimaru T, Sugie M, Tokuhashi K, Sekiya A. Hydrogen abstraction from dimethyl ether (DME) and dimethyl sulfide (DMS) by OH radical: a computational study. ACTA ACUST UNITED AC 2005. [DOI: 10.1016/j.theochem.2004.12.013] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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21
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González-García N, González-Lafont A, Lluch JM. Electronic structure study of the initiation routes of the dimethyl sulfide oxidation by OH. J Comput Chem 2005; 26:569-83. [PMID: 15726570 DOI: 10.1002/jcc.20190] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
In the present work the potential energy surface (PES) corresponding to the different initiation routes of the oxidation mechanism of DMS by hydroxyl radical in the absence of O(2) has been studied, and connections among the different stationary points have been established. Single-point high level electronic structure calculations at lower level optimized geometries have been shown to be necessary to assure convergence of energy barriers and reaction energies. Our results demonstrate that the oxidation of DMS by OH turns out to be initiated via three channels: a hydrogen abstraction channel that through a saddle point structure finally leads to CH(3)SCH(2) + H(2)O, an addition-elimination channel that firstly leads to an adduct complex (AD) and then via an elimination saddle point structure finally gives CH(3)SOH and CH(3) products, and a third channel that through a concerted pathway leads to CH(3)OH and CH(3)S. The H-abstraction and the addition-elimination channels initiate by a common pathway that goes through the same reactant complex (RC). Our theoretical results agree quite well with the branching ratios experimentally assigned to the formation of the different products. Finally, the calculated equilibrium constants of the formation of the complex AD and the hexadeuterated complex AD from the corresponding reactants, as a function of the temperature, are in good accordance with the experimental values.
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