1
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Freindorf M, McCutcheon M, Beiranvand N, Kraka E. Dihydrogen Bonding-Seen through the Eyes of Vibrational Spectroscopy. MOLECULES (BASEL, SWITZERLAND) 2022; 28:molecules28010263. [PMID: 36615456 PMCID: PMC9822382 DOI: 10.3390/molecules28010263] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 12/20/2022] [Accepted: 12/20/2022] [Indexed: 12/30/2022]
Abstract
In this work, we analyzed five groups of different dihydrogen bonding interactions and hydrogen clusters with an H3+ kernel utilizing the local vibrational mode theory, developed by our group, complemented with the Quantum Theory of Atoms-in-Molecules analysis to assess the strength and nature of the dihydrogen bonds in these systems. We could show that the intrinsic strength of the dihydrogen bonds investigated is primarily related to the protonic bond as opposed to the hydridic bond; thus, this should be the region of focus when designing dihydrogen bonded complexes with a particular strength. We could also show that the popular discussion of the blue/red shifts of dihydrogen bonding based on the normal mode frequencies is hampered from mode-mode coupling and that a blue/red shift discussion based on local mode frequencies is more meaningful. Based on the bond analysis of the H3+(H2)n systems, we conclude that the bond strength in these crystal-like structures makes them interesting for potential hydrogen storage applications.
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2
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Parimala devi D, Praveena G, Jeba Beula R, Abiram A. INVESTIGATION OF DIHYDROGEN BOND INTERACTION BETWEEN CYCLOALKENES AND ALKALI METAL HYDRIDES: A DFT APPROACH. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622040011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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3
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Duraisamy PD, Gopalan P, Angamuthu A. Molecular structure, FT-IR and NMR analyses of dihydrogen-bonded B3N3H6···HM complexes: a DFT and MP2 approach. CHEMICAL PAPERS 2019. [DOI: 10.1007/s11696-019-01011-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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4
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Li Q, Tang Y, Hu W, Li Z. Fluorescence of Nonaromatic Organic Systems and Room Temperature Phosphorescence of Organic Luminogens: The Intrinsic Principle and Recent Progress. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2018; 14:e1801560. [PMID: 30073754 DOI: 10.1002/smll.201801560] [Citation(s) in RCA: 110] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Revised: 06/07/2018] [Indexed: 05/05/2023]
Abstract
Following the development of photoluminescence systems with various compositions, some nontraditional structures, including nonaromatic organic systems as fluorophores and organic luminogens as the source of phosphorescence emission at room temperature, have attracted considerable attention for their advantages in biological and medical applications, and for the updated photophysical understandings in science. In this Review, the recent progress in understanding these organic compounds or polymers for fluorescence and phosphorescence is briefly summarized, with the aim of exploring the intrinsic principle of these novel photoluminescence systems and providing reasonable constructs for molecular design. Finally, some prospects are suggested for further development of this continually expanding area of research, with the coined concept of Molecular Uniting Set Identified Characteristic (MUSIC).
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Affiliation(s)
- Qianqian Li
- Department of Chemistry, Wuhan University, Wuhan, 430072, China
| | - Youhong Tang
- Institute for NanoScale Science and Technology, Flinders University, South Australia, 5042, Australia
| | - Wenping Hu
- Key Laboratory of Molecular Optoelectronic Sciences, School of Science, Tianjin University and Collaborative Innovation Center of Chemical Science and Engineering, Tianjin, 300072, China
| | - Zhen Li
- Department of Chemistry, Wuhan University, Wuhan, 430072, China
- The Institute of Molecular Aggregation Science, Tianjin University, Tianjin, 300072, China
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5
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Intermolecular dihydrogen bonding in VI, VII, and VIII group octahedral metal hydride complexes with water. J CHEM SCI 2018. [DOI: 10.1007/s12039-018-1498-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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6
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Yourdkhani S, Jabłoński M, Echeverría J. Attractive PHHP interactions revealed by state-of-the-art ab initio calculations. Phys Chem Chem Phys 2017; 19:28044-28055. [PMID: 28994835 DOI: 10.1039/c7cp04412g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
We report in this work a combined structural and state-of-the-art computational study of homopolar P-HH-P intermolecular contacts. Database surveys have shown the abundance of such surprisingly unexplored contacts, which are usually accompanied by other weak interactions in the solid state. By means of a detailed theoretical study utilizing SAPT(DFT), MP2, SCS-MP2, MP2C and CCSD(T) methods and both aug-cc-pVXZ and aug-cc-pCVXZ (X = D, T, Q, 5) basis sets as well as extrapolation to the CBS limit, we have shown that P-HH-P contacts are indeed attractive and considerably strong. SAPT(DFT) calculations have revealed the dispersive nature of the P-HH-P interaction with only minor contribution of the inductive term, whereas the first-order electrostatic term is clearly overbalanced by the first-order exchange energy. In general the computed interaction energies follow the trend: E ≈ E < E < E. Our results have also shown that the aug-cc-pVDZ (or aug-cc-pCVDZ) basis set is not yet well balanced and that the second-order dispersion energy term is the slowest converging among all SAPT(DFT) energy components. Compared to aug-cc-pVXZ basis sets, their core-correlation counterparts have a modest influence on all supermolecular interaction energies and a negligible influence on both the SAPT(DFT) interaction energy and its components.
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Affiliation(s)
- Sirous Yourdkhani
- Department of Chemistry, Tarbiat Modares University, P.O. Box 14115-175, Tehran, Iran
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7
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Alkorta I, Elguero J. Is it possible to use the 31
P chemical shifts of phosphines to measure hydrogen bond acidities (HBA)? A comparative study with the use of the 15
N chemical shifts of amines for measuring HBA. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3690] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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8
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Liu M, Li Q, Scheiner S. Comparison of tetrel bonds in neutral and protonated complexes of pyridineTF3and furanTF3(T = C, Si, and Ge) with NH3. Phys Chem Chem Phys 2017; 19:5550-5559. [DOI: 10.1039/c6cp07531b] [Citation(s) in RCA: 90] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Protonation not only changes the primary interaction mode between α/β-furanCF3/p-PyCF3and NH3but also prominently enhances the strength of the Si/Ge⋯N tetrel bond.
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Affiliation(s)
- Mingxiu Liu
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005
- People's Republic of China
| | - Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005
- People's Republic of China
| | - Steve Scheiner
- Department of Chemistry and Biochemistry
- Utah State University
- Logan
- USA
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9
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Esrafili MD, Amiri Z, Shankal F. Strong cooperative effects between π-hole and dihydrogen bonds interactions: a computational study. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1203037] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Mehdi D. Esrafili
- Department of Chemistry, Laboratory of Theoretical Chemistry, University of Maragheh, Maragheh, Iran
| | - Zakiyeh Amiri
- Department of Chemistry, Laboratory of Theoretical Chemistry, University of Maragheh, Maragheh, Iran
| | - Fatemeh Shankal
- Department of Chemistry, Laboratory of Theoretical Chemistry, University of Maragheh, Maragheh, Iran
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10
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Esrafili MD, Asadollahi S, Shahamat YD. The mutual influence of Y···N and H···H interactions in XHY···NCH···HM complexes (X = F, Cl, Br; Y = S, Se; M = Li, Na, BeH, MgH): tuning of the chalcogen bond by dihydrogen bond interaction. CAN J CHEM 2016. [DOI: 10.1139/cjc-2016-0052] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The equilibrium structures, interaction energies, and bonding properties of ternary XHY···NCH···HM complexes are studied by ab initio calculations, where X = F, Cl, Br, Y = S, Se, and M = Li, Na, BeH, MgH. The ab initio calculations are carried out at the MP2/aug-cc-pVTZ level. The results indicate that all optimized Y···N and H···H binding distances in the ternary complexes are smaller than the corresponding values in the binary systems. The calculated cooperative energies (Ecoop) are between −0.20 kcal/mol in BrHS···NCH···HBeH and −3.29 kcal/mol in FHSe···NCH···HNa. For a given Y and M, the estimated Ecoop values increase as X = F > Cl > Br. In addition, the selenium-bonded complexes exibit larger Ecoop values than those of the sulfur-bonded counterparts. The cooperativity between Y···N and H···H interactions is further analyzed by quantum theory of atoms in molecules and natural bond orbital methods. Cooperative effects make an increase in the J(Y–N) and J(H–H) spin–spin coupling constants of the ternary complexes with respect to the binary systems.
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Affiliation(s)
- Mehdi D. Esrafili
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
| | - Soheila Asadollahi
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
| | - Yousef Dadban Shahamat
- Environmental Heath Research Center, Golestan University of Medical Sciences, Gorgan, Iran
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11
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Esrafili MD, Vakili M, Javaheri M, Sobhi HR. Tuning of tetrel bonds interactions by substitution and cooperative effects in XH3Si···NCH···HM (X = H, F, Cl, Br; M = Li, Na, BeH and MgH) complexes. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1174786] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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12
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Derikvand Z, Zabardasti A, Azadbakht A. Intermolecular complexes of nido-C2B3H7 with HF and LiH molecules: the theoretical studies, bonding properties and natural bond orbital (NBO) analysis. Struct Chem 2016. [DOI: 10.1007/s11224-015-0576-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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13
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Derikvand Z, Zabardasti A, Azadbakht A. Theoretical study of intermolecular interactions in CB4H8-HOX (X=F, Cl, Br, I) complexes. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 150:778-785. [PMID: 26103431 DOI: 10.1016/j.saa.2015.06.026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2015] [Revised: 05/25/2015] [Accepted: 06/04/2015] [Indexed: 06/04/2023]
Abstract
The molecular aggregation based on intermolecular interactions between CB4H8 and HOX (X=F, Cl, Br and I) with particular emphasis on their bonding characteristics have been investigated using second order Moller-Plesset perturbation (MP2) method with aug-cc-pVDZ basis set. Different kinds of interactions including hydrogen bond (HB; H⋯O, XH; H⋯X), dihydrogen bond (DiHB; H⋯H) and non-classical B-B⋯H interactions were found between CB4H8 and HOX molecules. The structures of complexes have been analyzed using AIM and natural bond orbital methodologies. Good correlations have been found between the interaction energies (SE), the second-order perturbation energies E((2)), and the charge transfer qCT in the studied systems.
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Affiliation(s)
- Zohreh Derikvand
- Department of Chemistry, Faculty of Science, Khorramabad Branch, Islamic Azad University, Khorramabad, Iran.
| | - Abedien Zabardasti
- Department of Chemistry, Faculty of Science, Lorestan University, Khorramabad, Iran
| | - Azadeh Azadbakht
- Department of Chemistry, Faculty of Science, Khorramabad Branch, Islamic Azad University, Khorramabad, Iran
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14
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Solimannejad M, Jouypazadeh H, Farrokhpour H. Rovibrational energy and spectroscopic constant calculations of complexes pairing via dihydrogen bonds. J Mol Model 2015; 21:119. [PMID: 25877527 DOI: 10.1007/s00894-015-2662-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2015] [Accepted: 03/23/2015] [Indexed: 11/25/2022]
Abstract
In the present investigation, we performed a thorough study of potential energy curves, rovibrational spectra, and spectroscopic constants for complexes pairing via dihydrogen bonds. In particular, we dealt with LiH···HX (X = F, CN, CCH, CCF, CCCl) complexes by employing accurate electronic energy calculations at the MP2/aug-cc-pVDZ level of theory. Following this, the Numerov method was applied to solve the nuclear Schrödinger equation, thus obtaining spectroscopic constants and rovibrational spectra. Good linear correlation between the magnitudes of the interaction energies for interaction of HX with LiH, and the most positive electrostatic potentials of hydrogen in HX, was established.
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Affiliation(s)
- Mohammad Solimannejad
- Department of Chemistry, Faculty of Sciences, Arak University, Arak, 38156-8-8349, Iran,
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15
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The B–C and C–C bonds as preferred electron source for H-bond and Li-bond interactions in complex pairing of C4B2H6 with HF and LiH molecules. Struct Chem 2015. [DOI: 10.1007/s11224-015-0586-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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16
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Vatanparast M. Cooperativity between the halogen bonding and halogen–hydride bonding in NCX⋯NCX⋯HMgY complexes (X=F, Cl, Br; Y=H, F, Cl, Br, CH3, Li). COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2014.09.018] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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17
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Del Bene JE, Alkorta I, Elguero J. Pnicogen-Bonded Complexes HnF5–nP:N-Base, for n = 0–5. J Phys Chem A 2014; 118:10144-54. [DOI: 10.1021/jp509353a] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Janet E. Del Bene
- Department
of Chemistry, Youngstown State University, Youngstown, Ohio 44555, United States
| | - Ibon Alkorta
- Instituto de Química
Médica (IQM-CSIC), Juan de la
Cierva, 3, E-28006 Madrid, Spain
| | - José Elguero
- Instituto de Química
Médica (IQM-CSIC), Juan de la
Cierva, 3, E-28006 Madrid, Spain
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18
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Theoretical studies on the dihydrogen bonding between shortchain hydrocarbon and magnesium hydride. Chem Res Chin Univ 2014. [DOI: 10.1007/s40242-014-4051-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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19
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Mohajeri A, Fallahzadeh R. Tuning the halogen–hydride interaction: the role of halogen and metal environments. Mol Phys 2014. [DOI: 10.1080/00268976.2014.953014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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20
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Derikvand Z, Zabardasti A, Amini N. Theoretical investigation of H···F and H···H intermolecular interactions of nido-CB4H8 with HF molecule. Struct Chem 2014. [DOI: 10.1007/s11224-014-0487-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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21
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Li QZ, Zhuo HY, Li HB, Liu ZB, Li WZ, Cheng JB. Tetrel–Hydride Interaction between XH3F (X = C, Si, Ge, Sn) and HM (M = Li, Na, BeH, MgH). J Phys Chem A 2014; 119:2217-24. [DOI: 10.1021/jp503735u] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Qing-Zhong Li
- The Laboratory
of Theoretical and Computational Chemistry, School of Chemistry and
Chemical Engineering, Yantai University, Yantai 264005, People’s Republic of China
| | - Hong-Ying Zhuo
- The Laboratory
of Theoretical and Computational Chemistry, School of Chemistry and
Chemical Engineering, Yantai University, Yantai 264005, People’s Republic of China
| | - Hai-Bei Li
- School of Ocean, Shandong University, Weihai 264209, People’s Republic of China
| | - Zhen-Bo Liu
- The Laboratory
of Theoretical and Computational Chemistry, School of Chemistry and
Chemical Engineering, Yantai University, Yantai 264005, People’s Republic of China
| | - Wen-Zuo Li
- The Laboratory
of Theoretical and Computational Chemistry, School of Chemistry and
Chemical Engineering, Yantai University, Yantai 264005, People’s Republic of China
| | - Jian-Bo Cheng
- The Laboratory
of Theoretical and Computational Chemistry, School of Chemistry and
Chemical Engineering, Yantai University, Yantai 264005, People’s Republic of China
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22
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Fabiano E, Constantin LA, Della Sala F. Wave Function and Density Functional Theory Studies of Dihydrogen Complexes. J Chem Theory Comput 2014; 10:3151-62. [PMID: 26588286 DOI: 10.1021/ct500350n] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
We performed a benchmark study on a series of dihydrogen bond complexes and constructed a set of reference bond distances and interaction energies. The test set was employed to assess the performance of several wave function correlated and density functional theory methods. We found that second-order correlation methods describe relatively well the dihydrogen complexes. However, for high accuracy inclusion of triple contributions is important. On the other hand, none of the considered density functional methods can simultaneously yield accurate bond lengths and interaction energies. However, we found that improved results can be obtained by the inclusion of nonlocal exchange contributions.
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Affiliation(s)
- E Fabiano
- National Nanotechnology Laboratory (NNL), Istituto Nanoscienze-CNR , Via per Arnesano 16, 73100 Lecce, Italy.,Center for Biomolecular Nanotechnologies @UNILE, Istituto Italiano di Tecnologia (IIT) , Via Barsanti, 73010 Arnesano, LE, Italy
| | - L A Constantin
- Center for Biomolecular Nanotechnologies @UNILE, Istituto Italiano di Tecnologia (IIT) , Via Barsanti, 73010 Arnesano, LE, Italy
| | - F Della Sala
- National Nanotechnology Laboratory (NNL), Istituto Nanoscienze-CNR , Via per Arnesano 16, 73100 Lecce, Italy.,Center for Biomolecular Nanotechnologies @UNILE, Istituto Italiano di Tecnologia (IIT) , Via Barsanti, 73010 Arnesano, LE, Italy
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23
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Esrafili MD, Fatehi P, Solimannejad M. Mutual interplay between pnicogen bond and dihydrogen bond in HMH⋯HCN⋯PH2X complexes (M=Be, Mg, Zn; X=H, F, Cl). COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2014.02.003] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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24
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Esrafili MD, Fatehi P, Solimannejad M. Mutual influence between conventional and unconventional lithium bonds. J Mol Graph Model 2014; 49:129-37. [DOI: 10.1016/j.jmgm.2014.02.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Revised: 02/16/2014] [Accepted: 02/21/2014] [Indexed: 11/16/2022]
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25
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Solimannejad M, Rabbani M, Ahmadi A, Esrafili MD. Cooperative and diminutive interplay between the sodium bonding with hydrogen and dihydrogen bondings in ternary complexes of NaC3N with HMgH and HCN (HNC). Mol Phys 2014. [DOI: 10.1080/00268976.2013.879496] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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26
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Exploring lithium bonding interactions between noble-gas hydrides HXeY and LiX molecules (Y=H, CN, NC and X=H, CN, NC, OH, NH2, CH3): A theoretical study. COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2013.10.026] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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27
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Azofra LM, Quesada-Moreno MM, Alkorta I, Avilés-Moreno JR, López-González JJ, Elguero J. Carbohydrates in the gas phase: conformational preference ofd-ribose and 2-deoxy-d-ribose. NEW J CHEM 2014. [DOI: 10.1039/c3nj01076g] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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28
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29
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Esrafili MD, Esmailpour P, Mohammadian-Sabet F, Solimannejad M. Theoretical study of the interplay between halogen bond and lithium–π interactions: Cooperative and diminutive effects. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.10.009] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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30
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Esrafili MD, Fatehi P, Solimannejad M. Cooperative effects in cyclic LiCN and HCN clusters: A comparative study. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2013.08.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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31
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Esrafili MD, Mahdavinia G, Javaheri M, Sobhi HR. A theoretical study of substitution effects on halogen–π interactions. Mol Phys 2013. [DOI: 10.1080/00268976.2013.837535] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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32
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Theoretical study on cooperative effects between X⋯N and X⋯Carbene halogen bonds (X = F,Cl,Br and I). J Mol Model 2013; 19:4797-804. [DOI: 10.1007/s00894-013-1983-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2013] [Accepted: 08/21/2013] [Indexed: 10/26/2022]
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33
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Oliveira BGD. Structure, energy, vibrational spectrum, and Bader's analysis of π⋯H hydrogen bonds and H−δ⋯H+δdihydrogen bonds. Phys Chem Chem Phys 2013; 15:37-79. [DOI: 10.1039/c2cp41749a] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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34
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Azofra LM, Alkorta I, Elguero J, Popelier PL. Conformational study of the open-chain and furanose structures of d-erythrose and d-threose. Carbohydr Res 2012; 358:96-105. [DOI: 10.1016/j.carres.2012.06.011] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2012] [Revised: 06/18/2012] [Accepted: 06/19/2012] [Indexed: 10/28/2022]
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35
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36
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37
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Mohajeri A, Baresh I, Alipour M. Prediction and characterization of halogen–hydride interaction in Cu n H n ···ClC2Z and Cu n H···ClC2Z complexes (n = 2–5; Z = H, F, CH3). Struct Chem 2012. [DOI: 10.1007/s11224-012-0081-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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38
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Solimannejad M. Cooperative and diminutive interplay between lithium and dihydrogen bonding in F3YLi…NCH…HMH and F3YLi…HMH…HCN triads (Y=C, Si; M=Be, Mg). Chemphyschem 2012; 13:3158-62. [PMID: 22707081 DOI: 10.1002/cphc.201200333] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2012] [Revised: 06/07/2012] [Indexed: 11/11/2022]
Abstract
The F(3)YLi…NCH…HMH and F(3)YLi…HMH…HCN triads (Y=C, Si; M=Be, and Mg) are connected by lithium and dihydrogen bonds. To understand the properties of the systems better, the corresponding dyads are also studied. Molecular geometries, binding energies, infrared spectra and NMR properties of monomers, dyads, and triads are investigated at the MP2/6-311++G** computational level. Particular attention is paid to parameters, such as cooperative energies, and many-body interaction energies. Triads with the HMH molecule located at the end of the chain, show energetic cooperativity ranging between -3.66 to -7.59 kJ mol(-1). When the HMH molecule is located in the middle, the obtained cluster is diminutive with an energetic effect between 3.49 to 5.17 kJ mol(-1). The electronic properties of the complexes are analyzed using parameters derived from the atoms in molecules (AIM) methodology.
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Affiliation(s)
- Mohammad Solimannejad
- Quantum Chemistry Group, Department of Chemistry, Faculty of Sciences, Arak University, Arak 38156-8-8349, Iran.
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Solimannejad M, Ramezani V, Trujillo C, Alkorta I, Sánchez-Sanz G, Elguero J. Competition and interplay between σ-hole and π-hole interactions: a computational study of 1:1 and 1:2 complexes of nitryl halides (O2NX) with ammonia. J Phys Chem A 2012; 116:5199-206. [PMID: 22506896 DOI: 10.1021/jp300540z] [Citation(s) in RCA: 77] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Quantum calculations at the MP2/cc-pVTZ, MP2/aug-cc-pVTZ, and CCSD(T)/cc-pVTZ levels have been used to examine 1:1 and 1:2 complexes between O(2)NX (X = Cl, Br, and I) with NH(3). The interaction of the lone pair of the ammonia with the σ-hole and π-hole of O(2)NX molecules have been considered. The 1:1 complexes can easily be differentiated using the stretching frequency of the N-X bond. Thus, those complexes with σ-hole interaction show a blue shift of the N-X bond stretching whereas a red shift is observed in the complexes along the π-hole. The SAPT-DFT methodology has been used to gain insight on the source of the interaction energy. In the 1:2 complexes, the cooperative and diminutive energetic effects have been analyzed using the many-body interaction energies. The nature of the interactions has been characterized with the atoms in molecules (AIM) and natural bond orbital (NBO) methodologies. Stabilization energies of 1:1 and 1:2 complexes including the variation of the zero point vibrational energy (ΔZPVE) are in the ranges 7-26 and 14-46 kJ mol(-1), respectively.
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Affiliation(s)
- Mohammad Solimannejad
- Quantum Chemistry Group, Department of Chemistry, Faculty of Sciences, Arak University, Arak 38156-8-8349, Iran.
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Li Q, Liu X, Li R, Cheng J, Li W. Competition between dihydrogen bond and beryllium bond in complexes between HBeH and HArF: a huge blue shift of distant H-Ar stretch. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 90:135-140. [PMID: 22336045 DOI: 10.1016/j.saa.2012.01.022] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2011] [Revised: 01/02/2012] [Accepted: 01/16/2012] [Indexed: 05/31/2023]
Abstract
A novel interaction mechanism between HArF and BeH(2) has been validated and characterized with quantum chemical calculations at the MP2/aug-cc-pVQZ level. They can interact through beryllium bonding formed between the positively charged Be atom in BeH(2) and the negatively charged F atom in HArF, besides through dihydrogen bonding. The former (61.3 kcal/mol) is much stronger than the latter (5.9 kcal/mol). The red shift is found for the associated H-Ar stretch in the dihydrogen bonding, whereas the big blue shift is observed for the distant H-Ar stretch in the beryllium bonding. The blue shift of the distant H-Ar stretch is affected greatly by computational methods. It is calculated to be 712 cm(-1) at the CCSD(T)/6-311++G(3df,2p) level, which appears to be the largest blue shift validated for any weakly bound complex yet. The substitution effect on the beryllium bond is similar to that on hydrogen bonds. The Kr atom makes the beryllium bond weaken and the distant blue shift decrease. The nature and properties of beryllium bond have been analyzed with natural bond orbital (NBO), atoms in molecules (AIM), and energy decomposition.
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Affiliation(s)
- Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai, PR China.
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Alkorta I, Sanchez-Sanz G, Elguero J, Del Bene JE. FCl:PCX Complexes: Old and New Types of Halogen Bonds. J Phys Chem A 2012; 116:2300-8. [DOI: 10.1021/jp211451y] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006 Madrid, Spain
| | - Goar Sanchez-Sanz
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006 Madrid, Spain
| | - José Elguero
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006 Madrid, Spain
| | - Janet E. Del Bene
- Department
of Chemistry, Youngstown State University, Youngstown, Ohio 44555, United States
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Li QZ, Li R, Liu XF, Li WZ, Cheng JB. Pnicogen–Hydride Interaction between FH2X (X = P and As) and HM (M = ZnH, BeH, MgH, Li, and Na). J Phys Chem A 2012; 116:2547-53. [DOI: 10.1021/jp211435b] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Qing-Zhong Li
- The Laboratory of Theoretical and
Computational Chemistry,
School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People’s Republic
of China
| | - Ran Li
- The Laboratory of Theoretical and
Computational Chemistry,
School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People’s Republic
of China
| | - Xiao-Feng Liu
- The Laboratory of Theoretical and
Computational Chemistry,
School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People’s Republic
of China
| | - Wen-Zuo Li
- The Laboratory of Theoretical and
Computational Chemistry,
School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People’s Republic
of China
| | - Jian-Bo Cheng
- The Laboratory of Theoretical and
Computational Chemistry,
School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People’s Republic
of China
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Sandhya KS, Suresh CH. DFT study on the mechanism of water-assisted dihydrogen elimination in group 6 octahedral metal hydride complexes. Dalton Trans 2012; 41:11018-25. [DOI: 10.1039/c2dt31230a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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45
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Li QZ, Qi H, Li R, Liu XF, Li WZ, Cheng JB. Prediction and characterization of a chalcogen–hydride interaction with metal hybrids as an electron donor in F2CS–HM and F2CSe–HM (M = Li, Na, BeH, MgH, MgCH3) complexes. Phys Chem Chem Phys 2012; 14:3025-30. [DOI: 10.1039/c2cp23664h] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Li Y, Zhang L, Du S, Ren FD, Wang WL. A MP2(full) and CCSD(T) theoretical investigation on the dihydrogen-bonded interactions between HNa and RBBH (R=F, Cl, H, CN, NC and CO). COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.09.033] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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47
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ESRAFILI MEHDID, ELMI FATEMEH, HADIPOUR NASSERL. DENSITY FUNCTIONAL THEORY STUDY OF BINDING ENERGIES, 7Li NUCLEAR MAGNETIC SHIELDING, AND ELECTRIC FIELD GRADIENT TENSORS ON THE SMALL CLUSTERS OF LinHm (m ≤ n ≤ 4). JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2011. [DOI: 10.1142/s021963360700343x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The binding energies, geometries, 7 Li magnetic shielding, and electric field gradient tensors of hydrogenated lithium clusters, Li n H m (m ≤ n ≤ 4), were studied via density functional theory approach. We optimized the structures using B3LYP functional and 6-311++G (2d,2p) basis set. The calculated binding energies of lithium hydride clusters indicate that hydrogenation energy of Li n H m clusters decreases as the number of hydrogen atoms within the cluster increases. Our calculations also showed that for n = 4 clusters, the three-dimensional structure is more stable than the planar one. The study of the trends in the 7 Li magnetic shielding isotropy, σiso, and anisotropies, Δσ, values are explained in terms of the interplay between the electronic and geometrical effects. The variations in the 7 Li nuclear quadrupole coupling constants, χ, and their associated asymmetry parameters, ηQ, for different isomers of the lithium hydride clusters and the influence of hydrogenation on the EFG tensors are also discussed. For n = 4, we obtained a noticeable difference in the χ value from the planar to the three-dimensional structures. The atoms in molecules (AIM) analysis at the Li–H bond critical point reveals remarkably different topographical properties of the charge density and associated Laplacian fields for the planar and three-dimensional lithium hydride clusters.
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Affiliation(s)
| | - FATEMEH ELMI
- Department of Chemistry, Tarbiat Modares University, Tehran, Iran
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Esrafili MD, Alizadeh V. Characterization of O–H⋯O interactions in linear and cyclic clusters of boric acid: An ab initio, DFT, QTAIM and NBO study. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.07.019] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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49
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Feng L, Bai F, Wu Y, Zhang H. Does the molecular structure of CaH2 affect the dihydrogen bonding in CaH2 … HY (Y = CH3, C2H3, C2H, CN, and NC) complexes? A quantum chemistry study using MP2 and B3LYP methods. Sci China Chem 2011. [DOI: 10.1007/s11426-011-4391-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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50
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Sandhya KS, Suresh CH. Water Splitting Promoted by a Ruthenium(II) PNN Complex: An Alternate Pathway through a Dihydrogen Complex for Hydrogen Production. Organometallics 2011. [DOI: 10.1021/om200046u] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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