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Zhu X, Huang Y, Ji Y. Theoretical study on the solvation mechanism of camptothecin in ionic liquids. Phys Chem Chem Phys 2023; 25:12426-12442. [PMID: 37096366 DOI: 10.1039/d2cp05557k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2023]
Abstract
To reduce the environmental pollution caused by organic solvents and improve the extraction efficiency, a range of imidazolium-based ionic liquid (IL) combinations of [Omim]+ paired with [Br]-, [BF4]-, [Cl]-, [ClO4]-, [HsO4]-, [NO3]-, [NTf2]-, [OAc]-, [PF6]-, and [TsO]- are explored for the extraction of camptothecin (CPT) using molecular dynamics (MD) simulation and density functional theory (DFT) calculations. It is found that the ILs containing [Br]-, [OAc]-, and [TsO]- anions are the most promising solvents for CPT solvation because they exhibit stronger interaction energy and the lowest self-diffusion coefficient of CPT among all ILs. The microscopic mechanism at the molecular level is revealed based on DFT calculations and MD simulations, and the results demonstrate that the IL (i.e., [Omim][TsO]) containing anions with strong hydrogen bond (HB) acceptability and aromatic ring structure corresponds to both the strongest van der Waals interaction and strongest HB interaction of CPT-anions. Therefore, it is recommended that anions with aromatic ring structures or strong HB acceptability are promising anion candidates, while anions containing electron withdrawing groups and bulky substituents should be avoided. This work provides intermolecular insight into designing and selecting effective ILs for natural insoluble active pharmaceutical ingredient dissolution and extraction in further research.
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Affiliation(s)
- Xiaotong Zhu
- Jiangsu Province Hi-Tech Key Laboratory for Biomedical Research, School of Chemistry and Chemical Engineering, Southeast University, Nanjing, 211189, P. R. China.
| | - Yiping Huang
- Jiangsu Province Hi-Tech Key Laboratory for Biomedical Research, School of Chemistry and Chemical Engineering, Southeast University, Nanjing, 211189, P. R. China.
| | - Yuanhui Ji
- Jiangsu Province Hi-Tech Key Laboratory for Biomedical Research, School of Chemistry and Chemical Engineering, Southeast University, Nanjing, 211189, P. R. China.
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2
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Computational and theoretical study of graphitic carbon nitride (g-C3N4) as a drug delivery carrier for lonidamine drug to treat cancer. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113459] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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3
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Lai CH, Chang CC, Weng YL, Chuang TH. Synthesis, Experimental and Density Functional Theory (DFT) Studies on Solubility of Camptothecin Derivatives. Molecules 2018; 23:molecules23123170. [PMID: 30513778 PMCID: PMC6320962 DOI: 10.3390/molecules23123170] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 11/27/2018] [Accepted: 11/30/2018] [Indexed: 11/16/2022] Open
Abstract
Two camptothecin derivatives, 10-cyclohexyl-7-methyl-20(S)-camptothecin and 7-methyl-10-morpholino-20(S)-camptothecin, were synthesized and their differences in solubility were investigated using four chosen solvent systems. Based on our results, 10-cyclohexyl-7-methyl-20(S)-camptothecin exhibited higher solubilities than 7-methyl-10-morpholino-20(S)-camptothecin in polar aprotic solvents. However, these two camptothecin derivatives did not exhibit apparent differences in solubility between 5% dimethyl sulfoxide (DMSO)/95% normal saline co-solvent system and 5% dimethylacetamide (DMAC)/95% normal saline co-solvent system. To rationalize their differences in solubility, we also tried to perform a DFT-B3LYP study to investigate their interaction with one water molecule.
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Affiliation(s)
- Chin-Hung Lai
- Department of Medical Applied Chemistry, Chung Shan Medical University, Taichung 40201, Taiwan.
- Department of Medical Education, Chung Shan Medical University Hospital, Taichung 40201, Taiwan.
| | - Chia-Chin Chang
- Master Program for Pharmaceutical Manufacture, China Medical University, Taichung 40402, Taiwan.
| | - Yi-Lin Weng
- Master Program for Pharmaceutical Manufacture, China Medical University, Taichung 40402, Taiwan.
| | - Ta-Hsien Chuang
- Master Program for Pharmaceutical Manufacture, China Medical University, Taichung 40402, Taiwan.
- School of Pharmacy, China Medical University, Taichung 40402, Taiwan.
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4
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Dai Y, Hua Q, Ling J, Shao C, Zhong C, Zhang X, Hu Y, Zhang L, Liu Y. Quantum chemical calculation of free radical substitution reaction mechanism of camptothecin. J Mol Graph Model 2018; 84:174-181. [PMID: 30015049 DOI: 10.1016/j.jmgm.2018.04.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 04/13/2018] [Accepted: 04/17/2018] [Indexed: 12/31/2022]
Abstract
Free radical substitution reaction, which has low energy barrier and takes place in mild reaction conditions, is an important method for camptothecin's modification. The experimental data show that the free radical substitution reaction of camptothecin has high site selectivity, and prefers to take place at site 7. Up to now, few researches focus on the mechanism of it. In this study, the differences of the reaction rate constant (k) for the reactions at different sites, such as site of 7, 9, 10, 11, 12, were investigated with B3LYP of density functional theory at the 6-31 + G (d, p) base set level and CPCM aqueous solvent model. It was found that the substitution reaction can be carried out in two steps in acidic condition. First, the methyl radical attacks the corresponding site to form an intermediate having methyl radical combined with the camptothecin skeleton, and then a hydrogen atom was abstracted by the singlet oxygen to form methyl camptothecin, wherein the first step was the rate control step of the reaction. The results show that site 7 has the higherreaction rate constant (k) than other examined sites, indicating that the reaction tends to take place on site 7 position, which is in agreement with the experimental results.
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Affiliation(s)
- Yujie Dai
- Key Laboratory of Industrial Fermentation Microbiology (Tianjin University of Science & Technology), Ministry of Education, College of Bioengineering, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China.
| | - Qingyuan Hua
- Key Laboratory of Industrial Fermentation Microbiology (Tianjin University of Science & Technology), Ministry of Education, College of Bioengineering, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China
| | - Jun Ling
- Key Laboratory of Industrial Fermentation Microbiology (Tianjin University of Science & Technology), Ministry of Education, College of Bioengineering, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China
| | - Chunfu Shao
- Key Laboratory of Industrial Fermentation Microbiology (Tianjin University of Science & Technology), Ministry of Education, College of Bioengineering, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China
| | - Cheng Zhong
- Key Laboratory of Industrial Fermentation Microbiology (Tianjin University of Science & Technology), Ministry of Education, College of Bioengineering, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China
| | - Xiuli Zhang
- Key Laboratory of Industrial Fermentation Microbiology (Tianjin University of Science & Technology), Ministry of Education, College of Bioengineering, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China
| | - Yanying Hu
- Key Laboratory of Industrial Fermentation Microbiology (Tianjin University of Science & Technology), Ministry of Education, College of Bioengineering, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China
| | - Liming Zhang
- Key Laboratory of Industrial Fermentation Microbiology (Tianjin University of Science & Technology), Ministry of Education, College of Bioengineering, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China
| | - Yaotian Liu
- Key Laboratory of Industrial Fermentation Microbiology (Tianjin University of Science & Technology), Ministry of Education, College of Bioengineering, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China
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Lazareva NF, Baryshok VP, Lazarev IM. Silicon-containing analogs of camptothecin as anticancer agents. Arch Pharm (Weinheim) 2017; 351. [PMID: 29239010 DOI: 10.1002/ardp.201700297] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2017] [Revised: 11/28/2017] [Accepted: 11/30/2017] [Indexed: 12/17/2022]
Abstract
The plant pentacyclic alkaloid camptothecin and its structural analogs were extensively studied. These compounds are interesting due to the antitumor activity associated with their ability to inhibit topoisomerase I in tumor cells. During the last decades of the 20th century, a large number of the silicon-containing camptothecins (silatecans) were synthesized. 7-tert-Butyldimethylsilyl-10-hydroxy-camptothecin (DB-67 or AR-67) has enhanced lipophilicity and demonstrates a antitumor activity superior to its carbon analog. To date, certain silatecans are under clinical trials and their ultimate role in cancer therapy appears promising. In this review, we present chemical methodologies for the synthesis of silicon-containing camptothecins, their chemical properties, biological activity, and results of clinical trials.
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Affiliation(s)
- Nataliya F Lazareva
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russian Federation
| | - Viktor P Baryshok
- Irkutsk National Research Technical University, Irkutsk, Russian Federation
| | - Igor M Lazarev
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russian Federation
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Zotti G, Berlin A, Vercelli B. Electrochemistry of conjugated planar anticancer molecules: Irinotecan and Sunitinib. Electrochim Acta 2017. [DOI: 10.1016/j.electacta.2017.02.043] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Naumczuk B, Hyz K, Kawęcki R, Bocian W, Bednarek E, Sitkowski J, Wielgus E, Kozerski L. DOSY NMR and MALDI-TOF evidence of covalent binding the DNA duplex by trimethylammonium salts of topotecan upon near UV irradiation. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2015; 53:565-571. [PMID: 26017759 DOI: 10.1002/mrc.4255] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2014] [Revised: 03/25/2015] [Accepted: 04/01/2015] [Indexed: 06/04/2023]
Abstract
Using DOSY NMR and MALDI-TOF MS techniques, we present evidence that quaternary trimethylammonium salts of topotecan, [TPT-NMe3 ](+) X(-) (X = CF3SO3, HCOO), bind covalently the natural DNA oligomer upon near UV irradiation in water under physiological conditions. It is shown that formate salt is very reactive at pH 7 and requires short irradiation time. This weak irradiation at 365 nm paves the way for a new application of TPT derivatives in clinical use, which can dramatically increase the therapeutic effects of a medicine.
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Affiliation(s)
- Beata Naumczuk
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224, Warsaw, Kasprzaka 44, Poland
| | - Karolina Hyz
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224, Warsaw, Kasprzaka 44, Poland
| | - Robert Kawęcki
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224, Warsaw, Kasprzaka 44, Poland
- University of Natural Sciences and Humanities, 80-110, Siedlce, Poland
| | - Wojciech Bocian
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224, Warsaw, Kasprzaka 44, Poland
- National Medicines Institute, 00-725, Warsaw, Chełmska 30/34, Poland
| | - Elżbieta Bednarek
- National Medicines Institute, 00-725, Warsaw, Chełmska 30/34, Poland
| | - Jerzy Sitkowski
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224, Warsaw, Kasprzaka 44, Poland
- National Medicines Institute, 00-725, Warsaw, Chełmska 30/34, Poland
| | - Ewelina Wielgus
- Center of Molecular and Macromolecular Studies, Polish Academy of Sciences, Łódź, Poland
| | - Lech Kozerski
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224, Warsaw, Kasprzaka 44, Poland
- National Medicines Institute, 00-725, Warsaw, Chełmska 30/34, Poland
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8
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Coletta A, Castelli S, Chillemi G, Sanna N, Cushman M, Pommier Y, Desideri A. Solvent dependency of the UV-Vis spectrum of indenoisoquinolines: role of keto-oxygens as polarity interaction probes. PLoS One 2013; 8:e73881. [PMID: 24086299 PMCID: PMC3784438 DOI: 10.1371/journal.pone.0073881] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2013] [Accepted: 07/23/2013] [Indexed: 01/15/2023] Open
Abstract
Indenoisoquinolines are the most promising non-campthotecins topoisomerase IB inhibitors. We present an integrated experimental/computational investigation of the UV-Vis spectra of the IQNs parental compound (NSC314622) and two of its derivatives (NSC724998 and NSC725776) currently undergoing Phase I clinical trials. In all the three compounds a similar dependence of the relative absorption intensities at 270 nm and 290 nm on solvent polarity is found. The keto-oxygens in positions 5 and 11 of the molecular scaffold of the molecule are the principal chromophores involved in this dependence. Protic interactions on these sites are also found to give rise to absorptions at wavelength <250 nm observed in water solution, due to the stabilization of highly polarized tautomers of the molecule. These results suggest that the keto-oxygens are important polarizable groups that can act as useful interactors with the molecular receptor, providing at the same time an useful fingerprint for the monitoring of the drug binding to topoisomerase IB.
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Affiliation(s)
- Andrea Coletta
- Dipartimento di Biologia, Università degli Studi di Roma “Tor Vergata”, Roma, Italy
| | - Silvia Castelli
- Dipartimento di Biologia, Università degli Studi di Roma “Tor Vergata”, Roma, Italy
| | - Giovanni Chillemi
- Consorzio interuniversitario per le Applicazioni del Supercalcolo Per Università e Ricerca, Roma, Italy
| | - Nico Sanna
- Consorzio interuniversitario per le Applicazioni del Supercalcolo Per Università e Ricerca, Roma, Italy
| | - Mark Cushman
- Department of Medicinal Chemistry and Molecular Pharmacology, School of Pharmacy and Pharmaceutical Sciences, and the Purdue Center for Cancer Research, Purdue University, West Lafayette, Indiana, United States of America
| | - Yves Pommier
- Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America
| | - Alessandro Desideri
- Dipartimento di Biologia, Università degli Studi di Roma “Tor Vergata”, Roma, Italy
- * E-mail:
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9
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Dvoranová D, Bobeničová M, Šoralová S, Breza M. On UV–Vis spectra and structure of the anticancer drug camptothecin in solutions. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.07.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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10
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Murugan NA, Kongsted J, Ågren H. pH-Induced Modulation of One- and Two-Photon Absorption Properties in a Naphthalene-Based Molecular Probe. J Chem Theory Comput 2013; 9:3660-9. [DOI: 10.1021/ct400357t] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- N. Arul Murugan
- Division of Theoretical Chemistry
and Biology, School of Biotechnology, Royal Institute of Technology, SE-10691 Stockholm, Sweden
| | - Jacob Kongsted
- Department of Physics, Chemistry
and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
| | - Hans Ågren
- Division of Theoretical Chemistry
and Biology, School of Biotechnology, Royal Institute of Technology, SE-10691 Stockholm, Sweden
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11
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A theoretical study on mechanism of the anticancer drug camptothecin's E-ring-opening. J Mol Graph Model 2013; 43:58-65. [DOI: 10.1016/j.jmgm.2013.03.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2013] [Revised: 03/21/2013] [Accepted: 03/23/2013] [Indexed: 12/19/2022]
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12
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Zazza C, Olsen JM, Kongsted J. Solvatochromic shifts vs nanosolvation patterns: Uracil in water as a test case. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.07.020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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