1
|
LeMessurier N, Salzmann H, Leversee R, Weber JM, Eaves JD. Water-Hydrocarbon Interactions in Anionic Pyrene Monohydrate. J Phys Chem B 2024; 128:3200-3210. [PMID: 38526297 DOI: 10.1021/acs.jpcb.3c07777] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2024]
Abstract
Interactions between water and polycyclic aromatic hydrocarbons are essential in many aspects of chemistry, from interstellar and atmospheric processes to interfacial hydrophobicity and wetting phenomena. Despite their growing importance, the intermolecular potentials of the water-hydrocarbon interactions are underdeveloped compared to the water-water potentials, and there are similarly few experimental probes that are sensitive to the details of the water-hydrocarbon potential. We present a combined experimental and computational study of anionic pyrene monohydrate, one of the simplest water/hydrocarbon clusters. The action spectrum in the OH region of the mass-selected cluster ion provides a rigorous benchmark for intermolecular potentials and computational methodologies. We identify missing intermolecular interactions and shortcomings in conventional dynamics calculations by comparing experimental data to density functional theory and classical molecular dynamics calculations. Kinetic trapping is prevalent, even for one water molecule and one pyrene molecule, leading to slow equilibration in conventional molecular dynamics calculations, even on nanosecond time scales and at low temperatures (50 K). At constant energy, temperature fluctuations for the pair of molecules are substantial. Immersing the system in a bath of soft spheres and employing parallel tempering alleviates kinetic trapping and dampens temperature fluctuations, bringing the system closer to the thermodynamic limit. With such augmented sampling, a simple, flexible water model reproduces the line width and the asymmetric broadening of the symmetric OH stretching mode, which we assign to spectral diffusion. In the OH stretching region, dynamics calculations predict a more intense antisymmetric peak than experiments observe but do not predict the bimodal split symmetric peak that the experiments show. Our work suggests that electronic polarization, missing in the empirical force field, is responsible for the first discrepancy and that quantum nuclear effects, captured neither in density functional theory nor in classical dynamics, may be responsible for the second.
Collapse
Affiliation(s)
- Natalie LeMessurier
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
| | - Heinrich Salzmann
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
- JILA, University of Colorado, Boulder, Colorado 80309-0440, United States
| | - River Leversee
- JILA, University of Colorado, Boulder, Colorado 80309-0440, United States
- Department of Physics, University of Colorado, Boulder, Colorado 80309-0215, United States
| | - J Mathias Weber
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
- JILA, University of Colorado, Boulder, Colorado 80309-0440, United States
| | - Joel D Eaves
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
| |
Collapse
|
2
|
Maiyelvaganan KR, Ravva MK, Prakash M, Subramanian V. Benchmark studies on protonated benzene (BZH+) and water (Wn, n = 1–6) clusters: a comparison of hybrid DFT with MP2/CBS and CCSD(T)/CBS methods. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-02660-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
|
3
|
Patkowski K. Recent developments in symmetry‐adapted perturbation theory. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2019. [DOI: 10.1002/wcms.1452] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Konrad Patkowski
- Department of Chemistry and Biochemistry Auburn University Auburn Alabama
| |
Collapse
|
4
|
Stöhr M, Van Voorhis T, Tkatchenko A. Theory and practice of modeling van der Waals interactions in electronic-structure calculations. Chem Soc Rev 2019; 48:4118-4154. [PMID: 31190037 DOI: 10.1039/c9cs00060g] [Citation(s) in RCA: 75] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The accurate description of long-range electron correlation, most prominently including van der Waals (vdW) dispersion interactions, represents a particularly challenging task in the modeling of molecules and materials. vdW forces arise from the interaction of quantum-mechanical fluctuations in the electronic charge density. Within (semi-)local density functional approximations or Hartree-Fock theory such interactions are neglected altogether. Non-covalent vdW interactions, however, are ubiquitous in nature and play a key role for the understanding and accurate description of the stability, dynamics, structure, and response properties in a plethora of systems. During the last decade, many promising methods have been developed for modeling vdW interactions in electronic-structure calculations. These methods include vdW-inclusive Density Functional Theory and correlated post-Hartree-Fock approaches. Here, we focus on the methods within the framework of Density Functional Theory, including non-local van der Waals density functionals, interatomic dispersion models within many-body and pairwise formulation, and random phase approximation-based approaches. This review aims to guide the reader through the theoretical foundations of these methods in a tutorial-style manner and, in particular, highlight practical aspects such as the applicability and the advantages and shortcomings of current vdW-inclusive approaches. In addition, we give an overview of complementary experimental approaches, and discuss tools for the qualitative understanding of non-covalent interactions as well as energy decomposition techniques. Besides representing a reference for the current state-of-the-art, this work is thus also designed as a concise and detailed introduction to vdW-inclusive electronic structure calculations for a general and broad audience.
Collapse
Affiliation(s)
- Martin Stöhr
- Physics and Materials Science Research Unit, University of Luxembourg, L-1511 Luxembourg, Luxembourg.
| | | | | |
Collapse
|
5
|
Striolo A, Michaelides A, Joly L. The Carbon-Water Interface: Modeling Challenges and Opportunities for the Water-Energy Nexus. Annu Rev Chem Biomol Eng 2016; 7:533-56. [DOI: 10.1146/annurev-chembioeng-080615-034455] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Providing clean water and sufficient affordable energy to all without compromising the environment is a key priority in the scientific community. Many recent studies have focused on carbon-based devices in the hope of addressing this grand challenge, justifying and motivating detailed studies of water in contact with carbonaceous materials. Such studies are becoming increasingly important because of the miniaturization of newly proposed devices, with ubiquitous nanopores, large surface-to-volume ratio, and many, perhaps most of the water molecules in contact with a carbon-based surface. In this brief review, we discuss some recent advances obtained via simulations and experiments in the development of carbon-based materials for applications in water desalination. We suggest possible ways forward, with particular emphasis on the synergistic combination of experiments and simulations, with simulations now sometimes offering sufficient accuracy to provide fundamental insights. We also point the interested reader to recent works that complement our short summary on the state of the art of this important and fascinating field.
Collapse
Affiliation(s)
- Alberto Striolo
- Department of Chemical Engineering, University College London, London WC1E 7JE, United Kingdom
| | - Angelos Michaelides
- Thomas Young Centre, London Centre for Nanotechnology, and Department of Physics and Astronomy, University College London, London WC1H 0AH, United Kingdom
| | - Laurent Joly
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, France
| |
Collapse
|
6
|
Abstract
Interest in molecular crystals has grown thanks to their relevance to pharmaceuticals, organic semiconductor materials, foods, and many other applications. Electronic structure methods have become an increasingly important tool for modeling molecular crystals and polymorphism. This article reviews electronic structure techniques used to model molecular crystals, including periodic density functional theory, periodic second-order Møller-Plesset perturbation theory, fragment-based electronic structure methods, and diffusion Monte Carlo. It also discusses the use of these models for predicting a variety of crystal properties that are relevant to the study of polymorphism, including lattice energies, structures, crystal structure prediction, polymorphism, phase diagrams, vibrational spectroscopies, and nuclear magnetic resonance spectroscopy. Finally, tools for analyzing crystal structures and intermolecular interactions are briefly discussed.
Collapse
Affiliation(s)
- Gregory J O Beran
- Department of Chemistry, University of California , Riverside, California 92521, United States
| |
Collapse
|
7
|
Pandey KK. Does hydrohalic acid HX (X = F, Cl) form true N-protonated twisted amide salts? Effects of anions on the ion-pair interactions and on the amide moiety in N-protonated tricyclic twisted amide salts. NEW J CHEM 2016. [DOI: 10.1039/c6nj01342b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The [BF4]− and [RSO3]− anions interact with N-protonated amide cations through N–H⋯F and N–H⋯O strong hydrogen bonds and hydrohalic acids form very weak N⋯H–X hydrogen bonds.
Collapse
Affiliation(s)
- Krishna K. Pandey
- School of Chemical Sciences
- Devi Ahilya University Indore
- Indore-452017
- India
| |
Collapse
|
8
|
Pandey KK. Structure and bonding analysis of germanones [(Eind) 2 Ge O], [((Tbt))(Tip)Ge O] and [R 2 Ge O] (R = Me, Ph): Significance of the dispersion interactions. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2015.09.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
9
|
Pandey KK. Theoretical insights into structure, bonding, reactivity and importance of ion-pair interactions in Kirby's tetrafluoroboric acid salts of twisted amides. RSC Adv 2015. [DOI: 10.1039/c5ra22792e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
The hydrolysis of amide 1 is more exothermic and is more favorable than amides 2 and 3 with bridgehead methyl.
Collapse
Affiliation(s)
- Krishna K. Pandey
- School of Chemical Sciences
- D. A. University Indore
- Indore 452 017
- India
| |
Collapse
|
10
|
Kaprálová-Žďánská PR, Trachta M, Bludský O, Špirko V. Localised quantum states of atomic and molecular particles physisorbed on carbon-based nanoparticles. J Chem Phys 2014; 141:114702. [DOI: 10.1063/1.4894412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Petra Ruth Kaprálová-Žďánská
- Department of Radiation and Chemical Physics, Institute of Physics, Academy of Sciences of the Czech Republic, Na Slovance 2, 182 21 Prague 8, Czech Republic
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, Dolejškova 3, CZ-18223 Prague 8, Czech Republic
| | - Michal Trachta
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| | - Ota Bludský
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| | - Vladimír Špirko
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| |
Collapse
|
11
|
Huang Y, Goldey M, Head-Gordon M, Beran GJO. Achieving High-Accuracy Intermolecular Interactions by Combining Coulomb-Attenuated Second-Order Møller–Plesset Perturbation Theory with Coupled Kohn–Sham Dispersion. J Chem Theory Comput 2014; 10:2054-63. [DOI: 10.1021/ct5002329] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Yuanhang Huang
- Department
of Chemistry, University of California, Riverside, California 92521, United States
| | - Matthew Goldey
- Department
of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Martin Head-Gordon
- Department
of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Gregory J. O. Beran
- Department
of Chemistry, University of California, Riverside, California 92521, United States
| |
Collapse
|
12
|
Huang Y, Shao Y, Beran GJO. Accelerating MP2C dispersion corrections for dimers and molecular crystals. J Chem Phys 2014; 138:224112. [PMID: 23781788 DOI: 10.1063/1.4809981] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
The MP2C dispersion correction of Pitonak and Hesselmann [J. Chem. Theory Comput. 6, 168 (2010)] substantially improves the performance of second-order Møller-Plesset perturbation theory for non-covalent interactions, albeit with non-trivial computational cost. Here, the MP2C correction is computed in a monomer-centered basis instead of a dimer-centered one. When applied to a single dimer MP2 calculation, this change accelerates the MP2C dispersion correction several-fold while introducing only trivial new errors. More significantly, in the context of fragment-based molecular crystal studies, combination of the new monomer basis algorithm and the periodic symmetry of the crystal reduces the cost of computing the dispersion correction by two orders of magnitude. This speed-up reduces the MP2C dispersion correction calculation from a significant computational expense to a negligible one in crystals like aspirin or oxalyl dihydrazide, without compromising accuracy.
Collapse
Affiliation(s)
- Yuanhang Huang
- Department of Chemistry, University of California, Riverside, California 92521, USA
| | | | | |
Collapse
|
13
|
|
14
|
Hjertenæs E, Andersson S, Koch H. Assessment of density functionals for van der Waals complexes of sodium and benzene. Mol Phys 2013. [DOI: 10.1080/00268976.2013.794982] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Eirik Hjertenæs
- a Department of Chemistry , Norwegian University of Science and Technology , Trondheim , 7491 , Norway
| | - Stefan Andersson
- b SINTEF Materials and Chemistry , P.O. Box 4760, Trondheim , 7465 , Norway
| | - Henrik Koch
- a Department of Chemistry , Norwegian University of Science and Technology , Trondheim , 7491 , Norway
| |
Collapse
|
15
|
Xu J, Deible MJ, Peterson KA, Jordan KD. Correlation Consistent Gaussian Basis Sets for H, B–Ne with Dirac–Fock AREP Pseudopotentials: Applications in Quantum Monte Carlo Calculations. J Chem Theory Comput 2013; 9:2170-8. [DOI: 10.1021/ct300983b] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Jiawei Xu
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania
15218, United States
| | - Michael J. Deible
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania
15218, United States
| | - Kirk A. Peterson
- Department
of Chemistry, Washington State University, Pullman, Washington 99164,
United States
| | - Kenneth D. Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania
15218, United States
| |
Collapse
|
16
|
Kumar RM, Baskar P, Balamurugan K, Das S, Subramanian V. Interaction of ethylene glycol–water clusters with aromatic surfaces. RSC Adv 2013. [DOI: 10.1039/c3ra23338c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
|
17
|
Beran GJO, Wen S, Nanda K, Huang Y, Heit Y. Accurate and Robust Molecular Crystal Modeling Using Fragment-Based Electronic Structure Methods. Top Curr Chem (Cham) 2013; 345:59-93. [DOI: 10.1007/128_2013_502] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
|
18
|
Marom N, Tkatchenko A, Rossi M, Gobre VV, Hod O, Scheffler M, Kronik L. Dispersion Interactions with Density-Functional Theory: Benchmarking Semiempirical and Interatomic Pairwise Corrected Density Functionals. J Chem Theory Comput 2011; 7:3944-51. [PMID: 26598340 DOI: 10.1021/ct2005616] [Citation(s) in RCA: 192] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We present a comparative assessment of the accuracy of two different approaches for evaluating dispersion interactions: interatomic pairwise corrections and semiempirical meta-generalized-gradient-approximation (meta-GGA)-based functionals. This is achieved by employing conventional (semi)local and (screened-)hybrid functionals, as well as semiempirical hybrid and nonhybrid meta-GGA functionals of the M06 family, with and without interatomic pairwise Tkatchenko-Scheffler corrections. All of those are tested against the benchmark S22 set of weakly bound systems, a representative larger molecular complex (dimer of NiPc molecules), and a representative dispersively bound solid (hexagonal boron nitride). For the S22 database, we also compare our results with those obtained from the pairwise correction of Grimme (DFT-D3) and nonlocal Langreth-Lundqvist functionals (vdW-DF1 and vdW-DF2). We find that the semiempirical kinetic-energy-density dependence introduced in the M06 functionals mimics some of the nonlocal correlation needed to describe dispersion. However, long-range contributions are still missing. Pair-wise interatomic corrections, applied to conventional semilocal or hybrid functionals, or to M06 functionals, provide for a satisfactory level of accuracy irrespectively of the underlying functional. Specifically, screened-hybrid functionals such as the Heyd-Scuseria-Ernzerhof (HSE) approach reduce self-interaction errors in systems possessing both localized and delocalized orbitals and can be applied to both finite and extended systems. Therefore, they serve as a useful underlying functional for dispersion corrections.
Collapse
Affiliation(s)
- Noa Marom
- Department of Materials and Interfaces, Weizmann Institute of Science , Rehovoth 76100, Israel.,Center for Computational Materials, Institute for Computational Engineering and Sciences, University of Texas at Austin , Austin, Texas 78712, United States
| | - Alexandre Tkatchenko
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6, 14195 Berlin, Germany
| | - Mariana Rossi
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6, 14195 Berlin, Germany
| | - Vivekanand V Gobre
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6, 14195 Berlin, Germany
| | - Oded Hod
- School of Chemistry, The Sackler Faculty of Exact Sciences, Tel Aviv University , Tel Aviv 69978, Israel
| | - Matthias Scheffler
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6, 14195 Berlin, Germany
| | - Leeor Kronik
- Department of Materials and Interfaces, Weizmann Institute of Science , Rehovoth 76100, Israel
| |
Collapse
|