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Reiff J, Feldmaier M, Main J, Hernandez R. Dynamics and decay rates of a time-dependent two-saddle system. Phys Rev E 2021; 103:022121. [PMID: 33736042 DOI: 10.1103/physreve.103.022121] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Accepted: 01/20/2021] [Indexed: 11/07/2022]
Abstract
The framework of transition state theory (TST) provides a powerful way for analyzing the dynamics of physical and chemical reactions. While TST has already been successfully used to obtain reaction rates for systems with a single time-dependent saddle point, multiple driven saddles have proven challenging because of their fractal-like phase space structure. This paper presents the construction of an approximately recrossing-free dividing surface based on the normally hyperbolic invariant manifold in a time-dependent two-saddle model system. Based on this, multiple methods for obtaining instantaneous (time-resolved) decay rates of the underlying activated complex are presented and their results discussed.
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Affiliation(s)
- Johannes Reiff
- Institut für Theoretische Physik I, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Matthias Feldmaier
- Institut für Theoretische Physik I, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Jörg Main
- Institut für Theoretische Physik I, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Rigoberto Hernandez
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, USA.,Departments of Chemical & Biomolecular Engineering, and Materials Science and Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA
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2
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Miyazaki T, Watabe Y, Hashimoto Y, Takahashi Y, Sugiura Y, Saito K, Takayanagi T. Theoretical Analysis of the Formylmethylene Anion Photoelectron Spectrum: Importance of Wolff Rearrangement Dynamics. J Phys Chem A 2020; 124:9721-9728. [DOI: 10.1021/acs.jpca.0c09067] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Takaaki Miyazaki
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Saitama City, Saitama 338-8570, Japan
| | - Yuya Watabe
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Saitama City, Saitama 338-8570, Japan
| | - Yu Hashimoto
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Saitama City, Saitama 338-8570, Japan
| | - Yukinobu Takahashi
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Saitama City, Saitama 338-8570, Japan
| | - Yutaro Sugiura
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Saitama City, Saitama 338-8570, Japan
| | - Kohei Saito
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Saitama City, Saitama 338-8570, Japan
| | - Toshiyuki Takayanagi
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Saitama City, Saitama 338-8570, Japan
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3
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Nagahata Y, Borondo F, Benito RM, Hernandez R. Identifying reaction pathways in phase space via asymptotic trajectories. Phys Chem Chem Phys 2020; 22:10087-10105. [PMID: 32342955 DOI: 10.1039/c9cp06610a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this paper, we revisit the concepts of the reactivity map and the reactivity bands as an alternative to the use of perturbation theory for the determination of the phase space geometry of chemical reactions. We introduce a reformulated metric, called the asymptotic trajectory indicator, and an efficient algorithm to obtain reactivity boundaries. We demonstrate that this method has sufficient accuracy to reproduce phase space structures such as turnstiles for a 1D model of the isomerization of ketene in an external field. The asymptotic trajectory indicator can be applied to higher dimensional systems coupled to Langevin baths as we demonstrate for a 3D model of the isomerization of ketene.
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Affiliation(s)
- Yutaka Nagahata
- Department of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA.
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Abstract
Roaming reactions were first clearly identified in photodissociation of formaldehyde 15 years ago, and roaming dynamics are now recognized as a universal aspect of chemical reactivity. These reactions typically involve frustrated near-dissociation of a quasibound system to radical fragments, followed by reorientation at long range and intramolecular abstraction. The consequences can be unexpected formation of molecular products, depletion of the radical pool in chemical systems, and formation of products with unusual internal state distributions. In this review, I examine some current aspects of roaming reactions with an emphasis on experimental results, focusing on possible quantum effects in roaming and roaming dynamics in bimolecular systems. These considerations lead to a more inclusive definition of roaming reactions as those for which key dynamics take place at long range.
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Affiliation(s)
- Arthur G. Suits
- Department of Chemistry, University of Missouri, Columbia, Missouri 65211, USA
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Feldmaier M, Schraft P, Bardakcioglu R, Reiff J, Lober M, Tschöpe M, Junginger A, Main J, Bartsch T, Hernandez R. Invariant Manifolds and Rate Constants in Driven Chemical Reactions. J Phys Chem B 2019; 123:2070-2086. [DOI: 10.1021/acs.jpcb.8b10541] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Matthias Feldmaier
- Institut für Theoretische Physik 1, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Philippe Schraft
- Institut für Theoretische Physik 1, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Robin Bardakcioglu
- Institut für Theoretische Physik 1, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Johannes Reiff
- Institut für Theoretische Physik 1, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Melissa Lober
- Institut für Theoretische Physik 1, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Martin Tschöpe
- Institut für Theoretische Physik 1, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Andrej Junginger
- Institut für Theoretische Physik 1, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Jörg Main
- Institut für Theoretische Physik 1, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Thomas Bartsch
- Centre for Nonlinear Mathematics and Applications, Department of Mathematical Sciences, Loughborough University, Loughborough LE11 3TU, United Kingdom
| | - Rigoberto Hernandez
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
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6
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Abstract
The phenomenon of roaming in chemical reactions has now become both commonly observed in experiment and extensively supported by theory and simulations. Roaming occurs in highly-excited molecules when the trajectories of atomic motion often bypass the minimum energy pathway and produce reaction in unexpected ways from unlikely geometries. The prototypical example is the unimolecular dissociation of formaldehyde (H2CO), in which the "normal" reaction proceeds through a tight transition state to yield H2 + CO but for which a high fraction of dissociations take place via a "roaming" mechanism in which one H atom moves far from the HCO, almost to dissociation, and then returns to abstract the second H atom. We review below the theories and simulations that have recently been developed to address and understand this new reaction phenomenon.
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Affiliation(s)
- Joel M Bowman
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University Atlanta, Georgia 30322, USA.
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Quinn MS, Andrews DU, Nauta K, Jordan MJT, Kable SH. The energy dependence of CO(v,J) produced from H2CO via the transition state, roaming, and triple fragmentation channels. J Chem Phys 2017; 147:013935. [DOI: 10.1063/1.4983138] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Mitchell S. Quinn
- School of Chemistry, The University of New South Wales, Sydney, NSW 2052, Australia
| | - Duncan U. Andrews
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
| | - Klaas Nauta
- School of Chemistry, The University of New South Wales, Sydney, NSW 2052, Australia
| | | | - Scott H. Kable
- School of Chemistry, The University of New South Wales, Sydney, NSW 2052, Australia
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Mauguière FA, Collins P, Kramer ZC, Carpenter BK, Ezra GS, Farantos SC, Wiggins S. Roaming: A Phase Space Perspective. Annu Rev Phys Chem 2017; 68:499-524. [DOI: 10.1146/annurev-physchem-052516-050613] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Peter Collins
- School of Mathematics, University of Bristol, Bristol BS8 1TW, United Kingdom;, ,
| | - Zeb C. Kramer
- Department of Chemistry and Biochemistry, La Salle University, Philadelphia, Pennsylvania 19141
| | - Barry K. Carpenter
- School of Chemistry, Cardiff University, Cardiff CF10 3AT, United Kingdom
| | - Gregory S. Ezra
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853
| | - Stavros C. Farantos
- Department of Chemistry, University of Crete, Heraklion 700 13, Greece
- Institute of Electronic Structure and Laser, Foundation for Research and Technology—Hellas, Heraklion 711 10, Greece
| | - Stephen Wiggins
- School of Mathematics, University of Bristol, Bristol BS8 1TW, United Kingdom;, ,
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Mauguière FAL, Collins P, Stamatiadis S, Li A, Ezra GS, Farantos SC, Kramer ZC, Carpenter BK, Wiggins S, Guo H. Toward Understanding the Roaming Mechanism in H + MgH → Mg + HH Reaction. J Phys Chem A 2016; 120:5145-54. [PMID: 26918375 DOI: 10.1021/acs.jpca.6b00682] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The roaming mechanism in the reaction H + MgH →Mg + HH is investigated by classical and quantum dynamics employing an accurate ab initio three-dimensional ground electronic state potential energy surface. The reaction dynamics are explored by running trajectories initialized on a four-dimensional dividing surface anchored on three-dimensional normally hyperbolic invariant manifold associated with a family of unstable orbiting periodic orbits in the entrance channel of the reaction (H + MgH). By locating periodic orbits localized in the HMgH well or involving H orbiting around the MgH diatom, and following their continuation with the total energy, regions in phase space where reactive or nonreactive trajectories may be trapped are found. In this way roaming reaction pathways are deduced in phase space. Patterns similar to periodic orbits projected into configuration space are found for the quantum bound and resonance eigenstates. Roaming is attributed to the capture of the trajectories in the neighborhood of certain periodic orbits. The complex forming trajectories in the HMgH well can either return to the radical channel or "roam" to the MgHH minimum from where the molecule may react.
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Affiliation(s)
| | - Peter Collins
- School of Mathematics, University of Bristol , Bristol BS8 1TW, United Kingdom
| | - Stamatis Stamatiadis
- Department of Materials Science and Technology, University of Crete , Iraklion 710 03, Greece
| | - Anyang Li
- Department of Chemistry and Chemical Biology, University of New Mexico , Albuquerque, New Mexico 87131, United States
| | - Gregory S Ezra
- Baker Laboratory, Department of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States
| | - Stavros C Farantos
- Institute of Electronic Structure and Laser, Foundation for Research and Technology-Hellas, and Department of Chemistry, University of Crete, Iraklion 711 10, Greece
| | - Zeb C Kramer
- Baker Laboratory, Department of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States
| | - Barry K Carpenter
- School of Chemistry, Cardiff University , Cardiff CF10 3AT, United Kingdom
| | - Stephen Wiggins
- School of Mathematics, University of Bristol , Bristol BS8 1TW, United Kingdom
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico , Albuquerque, New Mexico 87131, United States
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Houston PL, Conte R, Bowman JM. Roaming Under the Microscope: Trajectory Study of Formaldehyde Dissociation. J Phys Chem A 2016; 120:5103-14. [DOI: 10.1021/acs.jpca.6b00488] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Paul L. Houston
- School
of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
- Department
of Chemistry and Chemical Biology, Cornell University, Baker Laboratory, Ithaca, New York 14852, United States
| | - Riccardo Conte
- Department
of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
- Dipartimento
di Chimica, Università degli Studi di Milano, 20133 Milano, Italy
| | - Joel M. Bowman
- Department
of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
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11
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Craven GT, Hernandez R. Deconstructing field-induced ketene isomerization through Lagrangian descriptors. Phys Chem Chem Phys 2016; 18:4008-18. [DOI: 10.1039/c5cp06624g] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Phase space contours (shown in color) constructed using the method of Lagrangian descriptors resolve the separatrices governing state transitions on the reaction-path potential energy surface (shown in white) for field-induced ketene isomerization.
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Affiliation(s)
- Galen T. Craven
- Center for Computational Molecular Science and Technology
- School of Chemistry and Biochemistry
- Georgia Institute of Technology
- Atlanta
- USA
| | - Rigoberto Hernandez
- Center for Computational Molecular Science and Technology
- School of Chemistry and Biochemistry
- Georgia Institute of Technology
- Atlanta
- USA
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Mauguière FAL, Collins P, Kramer ZC, Carpenter BK, Ezra GS, Farantos SC, Wiggins S. Phase Space Structures Explain Hydrogen Atom Roaming in Formaldehyde Decomposition. J Phys Chem Lett 2015; 6:4123-4128. [PMID: 26499774 DOI: 10.1021/acs.jpclett.5b01930] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We re-examine the prototypical roaming reaction--hydrogen atom roaming in formaldehyde decomposition--from a phase space perspective. Specifically, we address the question "why do trajectories roam, rather than dissociate through the radical channel?" We describe and compute the phase space structures that define and control all possible reactive events for this reaction, as well as provide a dynamically exact description of the roaming region in phase space. Using these phase space constructs, we show that in the roaming region, there is an unstable periodic orbit whose stable and unstable manifolds define a conduit that both encompasses all roaming trajectories exiting the formaldehyde well and shepherds them toward the H2···CO well.
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Affiliation(s)
| | - Peter Collins
- School of Mathematics, University of Bristol , Bristol BS8 1TW, United Kingdom
| | - Zeb C Kramer
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University , Ithaca, New York 14853, United States
| | - Barry K Carpenter
- School of Chemistry, Cardiff University , Cardiff CF10 3AT, United Kingdom
| | - Gregory S Ezra
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University , Ithaca, New York 14853, United States
| | - Stavros C Farantos
- Department of Chemistry, University of Crete and Institute of Electronic Structure and Laser, Foundation for Research and Technology - Hellas , Iraklion 711 10, Crete, Greece
| | - Stephen Wiggins
- School of Mathematics, University of Bristol , Bristol BS8 1TW, United Kingdom
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Mauguière FAL, Collins P, Ezra GS, Farantos SC, Wiggins S. Roaming dynamics in ion-molecule reactions: phase space reaction pathways and geometrical interpretation. J Chem Phys 2015; 140:134112. [PMID: 24712785 DOI: 10.1063/1.4870060] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A model Hamiltonian for the reaction CH4(+) -> CH3(+) + H, parametrized to exhibit either early or late inner transition states, is employed to investigate the dynamical characteristics of the roaming mechanism. Tight/loose transition states and conventional/roaming reaction pathways are identified in terms of time-invariant objects in phase space. These are dividing surfaces associated with normally hyperbolic invariant manifolds (NHIMs). For systems with two degrees of freedom NHIMS are unstable periodic orbits which, in conjunction with their stable and unstable manifolds, unambiguously define the (locally) non-recrossing dividing surfaces assumed in statistical theories of reaction rates. By constructing periodic orbit continuation/bifurcation diagrams for two values of the potential function parameter corresponding to late and early transition states, respectively, and using the total energy as another parameter, we dynamically assign different regions of phase space to reactants and products as well as to conventional and roaming reaction pathways. The classical dynamics of the system are investigated by uniformly sampling trajectory initial conditions on the dividing surfaces. Trajectories are classified into four different categories: direct reactive and non-reactive trajectories, which lead to the formation of molecular and radical products respectively, and roaming reactive and non-reactive orbiting trajectories, which represent alternative pathways to form molecular and radical products. By analysing gap time distributions at several energies, we demonstrate that the phase space structure of the roaming region, which is strongly influenced by nonlinear resonances between the two degrees of freedom, results in nonexponential (nonstatistical) decay.
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Affiliation(s)
| | - Peter Collins
- School of Mathematics, University of Bristol, Bristol BS8 1TW, United Kingdom
| | - Gregory S Ezra
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853, USA
| | - Stavros C Farantos
- Institute of Electronic Structure and Laser, Foundation for Research and Technology - Hellas, and Department of Chemistry, University of Crete, Iraklion 711 10, Crete, Greece
| | - Stephen Wiggins
- School of Mathematics, University of Bristol, Bristol BS8 1TW, United Kingdom
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de Souza MAF, Ventura E, do Monte SA, Riveros JM, Longo RL. Dynamic effects dictate the mechanism and selectivity of dehydration-rearrangement reactions of protonated alcohols [Me2 (R)CCH(OH2 )Me](+) (R=Me, Et, iPr) in the gas phase. Chemistry 2014; 20:13742-54. [PMID: 25179304 DOI: 10.1002/chem.201402617] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Indexed: 11/12/2022]
Abstract
The gas-phase dehydration-rearrangement (DR) reactions of protonated alcohols [Me2 (R)CCH(OH2 )Me](+) [R=Me (ME), Et (ET), and iPr (I-PR)] were studied by using static approaches (intrinsic reaction coordinate (IRC), Rice-Ramsperger-Kassel-Marcus theory) and dynamics (quasiclassical trajectory) simulations at the B3LYP/6-31G(d) level of theory. The concerted mechanism involves simultaneous water dissociation and alkyl migration, whereas in the stepwise reaction pathway the dehydration step leads to a secondary carbocation intermediate followed by alkyl migration. Internal rotation (IR) can change the relative position of the migrating alkyl group and the leaving group (water), so distinct products may be obtained: [Me(R)CCH(Me)Me⋅⋅⋅OH2 ](+) and [Me(Me)CCH(R)Me⋅⋅⋅OH2 ](+) . The static approach predicts that these reactions are concerted, with the selectivity towards these different products determined by the proportion of the conformers of the initial protonated alcohols. These selectivities are explained by the DR processes being much faster than IR. These results are in direct contradiction with the dynamics simulations, which indicate a predominantly stepwise mechanism and selectivities that depend on the alkyl groups and dynamics effects. Indeed, despite the lifetimes of the secondary carbocations being short (<0.5 ps), IR can take place and thus provide a rich selectivity. These different selectivities, particularly for ET and I-PR, are amenable to experimental observation and provide evidence for the minor role played by potential-energy surface and the relevance of the dynamics effects (non-IRC pathways, IR) in determining the reaction mechanisms and product distribution (selectivity).
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Affiliation(s)
- Miguel A F de Souza
- Departamento de Química Fundamental, Universidade Federal de Pernambuco, 50.740-560, Recife, PE (Brazil), Fax:(+55) 83-21268000; Instituto de Química, Universidade de São Paulo, Caixa Postal 26077, 05599-970, São Paulo, SP (Brazil)
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Affiliation(s)
- Joel M. Bowman
- Department of Chemistry, Emory University, Atlanta, GA, USA
- Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, GA, USA
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Mauguière FA, Collins P, Ezra GS, Farantos SC, Wiggins S. Multiple transition states and roaming in ion–molecule reactions: A phase space perspective. Chem Phys Lett 2014. [DOI: 10.1016/j.cplett.2013.12.051] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Allen AD, Tidwell TT. Structure and Mechanism in Ketene Chemistry. ADVANCES IN PHYSICAL ORGANIC CHEMISTRY 2014. [DOI: 10.1016/b978-0-12-800256-8.00004-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Ulusoy IS, Stanton JF, Hernandez R. Correction to “Effects of Roaming Trajectories on the Transition State Theory Rates of a Reduced-Dimensional Model of Ketene Isomerization”. J Phys Chem A 2013. [DOI: 10.1021/jp408997z] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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