1
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Punyain W, Takahashi K. Evaluation of Ar tagging toward the vibrational spectra and zero point energy of X -HOH, X -DOH, and X -HOD, for X = F, Cl, Br. Phys Chem Chem Phys 2021; 23:9492-9499. [PMID: 33885081 DOI: 10.1039/d0cp06339h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this study, we theoretically evaluated the effect of argon tagging toward the binding energy and vibrational spectra of water halide anion complexes Ar.X-HOH, Ar.X-HOD, and Ar.X-DOH (X = F, Cl, Br). The ionic hydrogen bond (IHB) OH stretching mode was calculated to have a strong peak in the vibrational spectra, and coupling to intermolecular modes as well as bending modes was observed as combination bands and Fermi resonances. We found that the argon tagging affected the IHB OH stretching peak position in Ar.F-H2O, but not in Ar.Cl-H2O and Ar.Br-H2O. Furthermore, D-binding is favored for Cl and Br based on zero point energies, but for F our calculated zero point energies did not show a preference between H- and D-binding. We show that the competition of the energy lowering in the zero point energy of the anharmonic IHB OH (OD) stretching mode versus the intermolecular out-of-plane IHB OH (OD) wagging mode is important for determining the preference between H- and D-binding for these monohydrated halide clusters. We also found that for X-HOD the HOD bending fundamental peak is blue shifted compared to bare HOD, but is redshifted for F-DOH.
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Affiliation(s)
- Wikorn Punyain
- Institute of Atomic and Molecular Sciences, Academia Sinica, PO Box 23-166, Taipei 10617, Taiwan.
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2
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Duong CH, Yang N, Kelleher PJ, Johnson MA, DiRisio RJ, McCoy AB, Yu Q, Bowman JM, Henderson BV, Jordan KD. Tag-Free and Isotopomer-Selective Vibrational Spectroscopy of the Cryogenically Cooled H9O4+ Cation with Two-Color, IR–IR Double-Resonance Photoexcitation: Isolating the Spectral Signature of a Single OH Group in the Hydronium Ion Core. J Phys Chem A 2018; 122:9275-9284. [DOI: 10.1021/acs.jpca.8b08507] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Chinh H. Duong
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Nan Yang
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Patrick J. Kelleher
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Ryan J. DiRisio
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Anne B. McCoy
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Qi Yu
- Department of Chemistry and Cherry L. Emerson Center for Computational Science, Emory University, Atlanta, Georgia 30322, United States
| | - Joel M. Bowman
- Department of Chemistry and Cherry L. Emerson Center for Computational Science, Emory University, Atlanta, Georgia 30322, United States
| | - Bryan V. Henderson
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Kenneth D. Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
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3
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McDonald DC, Wagner JP, McCoy AB, Duncan MA. Near-Infrared Spectroscopy and Anharmonic Theory of Protonated Water Clusters: Higher Elevations in the Hydrogen Bonding Landscape. J Phys Chem Lett 2018; 9:5664-5671. [PMID: 30205006 DOI: 10.1021/acs.jpclett.8b02499] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Near-infrared spectroscopy measurements are presented for protonated water clusters, H+(H2O) n, in the size range of n = 1-8. Clusters are produced in a pulsed-discharge supersonic expansion, mass selected, and studied with infrared laser photodissociation spectroscopy in the regions of 3600-4550 and 4850-7350 cm-1. Although there is some variation with cluster size, the main features of these spectra are a broad absorption near 5300 cm-1, a sharp doublet near 7200 cm-1, as well as a structured absorption near 4100 cm-1 for n ≥ 2. The vibrational patterns measured for the hydronium, Zundel, and Eigen ions are compared to those predicted by different forms of anharmonic theory. Second-order vibrational perturbation theory (VPT2) and a local mode treatment of the OH stretches both capture key aspects of the spectra but suffer understandable deficiencies in the quantitative description of band positions and intensities.
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Affiliation(s)
- D C McDonald
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - J P Wagner
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - A B McCoy
- Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States
| | - M A Duncan
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
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4
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Esser TK, Knorke H, Siro-Brigiano F, Galimberti DR, Asmis KR, Gaigeot MP, Lisy JM. Influence of argon and D2 tagging on the hydrogen bond network in Cs+(H2O)3; kinetic trapping below 40 K. Phys Chem Chem Phys 2018; 20:28476-28486. [DOI: 10.1039/c8cp06020g] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Tuning cluster ion conformations between 12 and 21 K.
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Affiliation(s)
- Tim K. Esser
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie
- Universität Leipzig
- D-04103 Leipzig
- Germany
| | - Harald Knorke
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie
- Universität Leipzig
- D-04103 Leipzig
- Germany
| | | | | | - Knut R. Asmis
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie
- Universität Leipzig
- D-04103 Leipzig
- Germany
| | | | - James M. Lisy
- Department of Chemistry
- University of Illinois at Urbana-Champaign, Urbana
- Illinois 61801
- USA
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5
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Mauney DT, Maner JA, Duncan MA. IR Spectroscopy of Protonated Acetylacetone and Its Water Clusters: Enol-Keto Tautomers and Ion→Solvent Proton Transfer. J Phys Chem A 2017; 121:7059-7069. [PMID: 28853889 DOI: 10.1021/acs.jpca.7b07180] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Protonated ions of acetylacetone, H+(Hacac), and their argon-tagged analogues are produced via a pulsed discharge and cooled in a supersonic expansion. These ions are mass analyzed, selected in a time-of-flight spectrometer, and studied with infrared laser photodissociation spectroscopy using the method of rare-gas atom tagging. Computational studies at the DFT/B3LYP level are employed to elucidate the structures and spectra of these ions, which are expected to exist as either enol- or keto-based tautomers. The protonated acetylacetone ion is found to form a single enol-based isomer. Adding one or two water molecules to this ion, for example, H+(Hacac)(H2O)1,2, produces primarily enol-based structures, although a small concentration of keto structures also contribute to the spectra. The vibrational patterns resulting from hydrogen bonding in these systems are not well-described by theory. Addition of a third water molecule to form the H+(Hacac)(H2O)3 ion causes a significant change in the spectroscopy, attributed to proton transfer from the H+(Hacac) ion into the water solvent.
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Affiliation(s)
- Daniel T Mauney
- Department of Chemistry, University of Georgia , Athens, Georgia 30602, United States
| | - Jonathon A Maner
- Department of Chemistry, University of Georgia , Athens, Georgia 30602, United States
| | - Michael A Duncan
- Department of Chemistry, University of Georgia , Athens, Georgia 30602, United States
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6
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Shi R, Huang X, Su Y, Lu HG, Li SD, Tang L, Zhao J. Which Density Functional Should Be Used to Describe Protonated Water Clusters? J Phys Chem A 2017; 121:3117-3127. [DOI: 10.1021/acs.jpca.7b00058] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ruili Shi
- Key
Laboratory of Materials Modification by Laser, Ion and Electron Beams, Dalian University of Technology, Ministry of Education, Dalian, 116024, China
| | - Xiaoming Huang
- School
of Ocean Science and Technology, Dalian University of Technology, Panjin Campus, Panjin, 124221, China
| | - Yan Su
- Key
Laboratory of Materials Modification by Laser, Ion and Electron Beams, Dalian University of Technology, Ministry of Education, Dalian, 116024, China
| | - Hai-Gang Lu
- Key
Laboratory of Chemical Biology and Molecular Engineering of the Education
Ministry, Institute of Molecular Science, Shanxi University, Taiyuan, 030006, China
| | - Si-Dian Li
- Key
Laboratory of Chemical Biology and Molecular Engineering of the Education
Ministry, Institute of Molecular Science, Shanxi University, Taiyuan, 030006, China
| | - Lingli Tang
- College
of Science, Dalian Nationalities University, Dalian 116600, China
| | - Jijun Zhao
- Key
Laboratory of Materials Modification by Laser, Ion and Electron Beams, Dalian University of Technology, Ministry of Education, Dalian, 116024, China
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7
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Litman YE, Videla PE, Rodriguez J, Laria D. Positional Isotope Exchange in HX·(H2O)n (X = F, I) Clusters at Low Temperatures. J Phys Chem A 2016; 120:7213-24. [DOI: 10.1021/acs.jpca.6b06681] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yair E. Litman
- Departamento
de Química Inorgánica, Analítica y Química-Física
and INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
| | - Pablo E. Videla
- Departamento
de Química Inorgánica, Analítica y Química-Física
and INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
| | - Javier Rodriguez
- Departamento
de Física de la Materia Condensada, Comisión Nacional de Energía Atómica, Avenida Libertador 8250, 1429 Buenos Aires, Argentina
- ECyT, UNSAM, Martín
de Irigoyen 3100, 1650 San Martín, Pcia. de Buenos Aires, Argentina
| | - Daniel Laria
- Departamento
de Química Inorgánica, Analítica y Química-Física
and INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
- Departamento
de Física de la Materia Condensada, Comisión Nacional de Energía Atómica, Avenida Libertador 8250, 1429 Buenos Aires, Argentina
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8
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Herr JD, Steele RP. Ion–Radical Pair Separation in Larger Oxidized Water Clusters, (H2O)+n=6–21. J Phys Chem A 2016; 120:7225-39. [DOI: 10.1021/acs.jpca.6b07465] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Jonathan D. Herr
- Department
of Chemistry and Henry Eyring Center for
Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Ryan P. Steele
- Department
of Chemistry and Henry Eyring Center for
Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
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9
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Cheng X, Herr JD, Steele RP. Accelerating Ab Initio Path Integral Simulations via Imaginary Multiple-Timestepping. J Chem Theory Comput 2016; 12:1627-38. [DOI: 10.1021/acs.jctc.6b00021] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xiaolu Cheng
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Jonathan D. Herr
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Ryan P. Steele
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
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10
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Kaledin M, Wood CA. Ab Initio Studies of Structural and Vibrational Properties of Protonated Water Cluster H7O3(+) and Its Deuterium Isotopologues: An Application of Driven Molecular Dynamics. J Chem Theory Comput 2015; 6:2525-35. [PMID: 26613504 DOI: 10.1021/ct100122s] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
In this work, we present infrared (IR) spectra of H7O3(+) and its deuterium isotopomers calculated by direct molecular dynamics (MD) simulations at the B3LYP/6-31+G** computational level. The calculated spectra obtained at 100, 300, and 500 K were compared to available experimental observations, and spectral features were assigned using normal-mode analysis (NMA) and driven molecular dynamics (DMD). Spectral peaks at 2410 and 2540 cm(-1) were assigned to asymmetric and symmetric stretches of the bridging hydrogen (BH) using NMA. The weak spectral features at 2166 and 2275 cm(-1) were assigned to a combination band of BH asymmetric stretch, H2O in phase wagging, OO stretch, and H3O(+) rocking vibrations by DMD simulations. Our observation of BH stretch vibrations as low as 2166 cm(-1) is in good agreement with the assignment of the low-resolution spectrum obtained by Schwarz at 2200-2300 cm(-1) [Schwarz, H. A. J. Chem. Phys. 1977, 67, 5525-5534] and vibrational predissociation spectrum by Lee et al. ∼2300 cm(-1) [Okumura, M.; Yeh, L. I.; Myers, J. D.; Lee, Y. T. J. Chem. Phys. 1990, 94, 3416-3427].
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Affiliation(s)
- Martina Kaledin
- Chemistry and Biochemistry, Kennesaw State University, 1000 Chastain Road, Box 1203, Kennesaw, Georgia 30144
| | - Christopher A Wood
- Chemistry and Biochemistry, Kennesaw State University, 1000 Chastain Road, Box 1203, Kennesaw, Georgia 30144
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11
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Fournier JA, Wolke CT, Johnson MA, Odbadrakh TT, Jordan KD, Kathmann SM, Xantheas SS. Snapshots of Proton Accommodation at a Microscopic Water Surface: Understanding the Vibrational Spectral Signatures of the Charge Defect in Cryogenically Cooled H+(H2O)n=2–28 Clusters. J Phys Chem A 2015; 119:9425-40. [DOI: 10.1021/acs.jpca.5b04355] [Citation(s) in RCA: 100] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Joseph A. Fournier
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Conrad T. Wolke
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Tuguldur T. Odbadrakh
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15620, United States
| | - Kenneth D. Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15620, United States
| | - Shawn M. Kathmann
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, United States
| | - Sotiris S. Xantheas
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, United States
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12
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DePalma JW, Kelleher PJ, Johnson CJ, Fournier JA, Johnson MA. Vibrational Signatures of Solvent-Mediated Deformation of the Ternary Core Ion in Size-Selected [MgSO4Mg(H2O)n=4–11]2+ Clusters. J Phys Chem A 2015; 119:8294-302. [DOI: 10.1021/acs.jpca.5b04612] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Joseph W. DePalma
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Patrick J. Kelleher
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Christopher J. Johnson
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Joseph A. Fournier
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Mark A. Johnson
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
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13
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Kaledin M, Adedeji DT. Driven molecular dynamics studies of the shared proton motion in the H5O2+·Ar cluster: the effect of argon tagging and deuteration on vibrational spectra. J Phys Chem A 2015; 119:1875-84. [PMID: 25686318 DOI: 10.1021/jp511305c] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report IR spectra of H5O2(+) and H5O2(+)·Ar and their deuterium isotopologues using ab initio molecular dynamics. The trajectories were propagated as microcanonical (NVE) ensembles at energies corresponding to temperatures 50 and 100 K. The potential energy surface is calculated on-the-fly at the MP2/aug-cc-pVDZ level of theory. The calculations show that adding an argon atom to H5O2(+) introduces symmetry breaking in the Zundel core ion, causes blueshift in the shared proton vibration by about 200 cm(-1), and leads to the splitting of the OH stretch vibrations into four bands. Driven molecular dynamics (DMD) method is used to assign the spectrum by coupling the dipole moment to an external electric field oscillating at frequency ω. The broad feature at 1100 cm(-1) in the H5O2(+)·Ar spectrum is ascribed to the large amplitude shared proton vibration coupled with torsion and wag modes. MD MP2 simulations predict the H/D redshift in the shared proton vibration and water bending vibration to be about 280 and 460 cm(-1), respectively, in good agreement with experimental observations.
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Affiliation(s)
- Martina Kaledin
- Kennesaw State University , Chemistry & Biochemistry, 370 Paulding Avenue NW, Box No. 1203, Kennesaw, Georgia 30144, United States
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14
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Abstract
A proton transfer process is usually dominant in several biological phenomena such as the energy relaxation of photo-excited DNA base pairs and a charge relay process in Ser-His-Glu.
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Affiliation(s)
- Hiroto Tachikawa
- Division of Materials Chemistry
- Graduate School of Engineering
- Hokkaido University
- Sapporo 060-8628
- Japan
| | - Tomoya Takada
- Department of Material Chemistry
- Asahikawa National College of Technology
- Asahikawa 071-8142
- Japan
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15
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Sigalov MV, Kalish N, Carmeli B, Pines D, Pines E. Probing Small Protonated Water Clusters in Acetonitrile Solutions by 1H NMR. ACTA ACUST UNITED AC 2013. [DOI: 10.1524/zpch.2013.0399] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Abstract
In a previous publication by Kalish et al. (J. Phys. Chem. A 115 (2011) 4063) the existence of well defined small protonated water clusters in acetonitrile has been established by IR spectroscopy. Here we report on a 1H NMR study of triflic acid, CF3SO3H, in acetonitrile-water solutions. Using NMR we are able to corroborate the general solvation scheme we have proposed for the hydrated proton in acetonitrile as a function of the molar ratio between the strong mineral acid and water, n = [H2O]/[acid]. According to this scheme, backed now by both IR absorption spectroscopy and NMR measurements, the very strong triflic acid completely dissociates in acetonitrile/water solutions to yield the aqueous proton and the triflate anion when n > 1. Furthermore, increasing n results in the proton solvated in increasingly larger water clusters formed within the acetonitrile solution.
Clearly distinguishable by NMR are the smallest protonated water clusters, the protonated water monomer, H3
+O, and the protonated water dimer, H5
+O2, which dominate the solution for n = 1,2,3. For larger n the NMR study indicates the gradual increase of the average protonated water cluster size as a function of n while the proton inner solvation core more closely retaining the characteristics of a deformed protonated water dimer, (H2O-H+⋯OH2)
s
than that of the protonated water monomer (H3
+O)
s
.
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Affiliation(s)
- Mark V. Sigalov
- Ben-Gurion University of the Negev, Department of Chemistry, Beer-Sheva 84125, Israel
| | - Noah Kalish
- Ben-Gurion University of the Negev, Department of Chemistry, Beer-Sheva 84125, Israel
| | - Benny Carmeli
- Ben-Gurion University of the Negev, Department of Chemistry, Beer-Sheva 84125, Israel
| | - Dina Pines
- Ben-Gurion University of the Negev, Department of Chemistry, Beer-Sheva 84125, Israel
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16
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Fujii A, Mizuse K. Infrared spectroscopic studies on hydrogen-bonded water networks in gas phase clusters. INT REV PHYS CHEM 2013. [DOI: 10.1080/0144235x.2012.760836] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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17
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18
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Cheng TC, Bandyopadhyay B, Mosley JD, Duncan MA. IR Spectroscopy of Protonation in Benzene–Water Nanoclusters: Hydronium, Zundel, and Eigen at a Hydrophobic Interface. J Am Chem Soc 2012; 134:13046-55. [DOI: 10.1021/ja3038245] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Timothy C. Cheng
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | | | - Jonathan D. Mosley
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Michael A. Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
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19
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Mizuse K, Fujii A. Tuning of the Internal Energy and Isomer Distribution in Small Protonated Water Clusters H+(H2O)4–8: An Application of the Inert Gas Messenger Technique. J Phys Chem A 2012; 116:4868-77. [DOI: 10.1021/jp302030d] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kenta Mizuse
- Department of Chemistry,
Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Asuka Fujii
- Department of Chemistry,
Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
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20
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Olesen S, Guasco T, Roscioli J, Johnson M. Tuning the intermolecular proton bond in the H5 O2+ ‘Zundel ion’ scaffold. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2011.04.060] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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21
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Guasco TL, Johnson MA, McCoy AB. Unraveling Anharmonic Effects in the Vibrational Predissociation Spectra of H5O2+ and Its Deuterated Analogues. J Phys Chem A 2011; 115:5847-58. [DOI: 10.1021/jp109999b] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Timothy L. Guasco
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, United States
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, United States
| | - Anne B. McCoy
- Department of Chemistry, The Ohio State University, Columbus, Ohio 43210, United States
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22
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Mizuse K, Fujii A. Infrared photodissociation spectroscopy of H+(H2O)6·Mm (M = Ne, Ar, Kr, Xe, H2, N2, and CH4): messenger-dependent balance between H3O+ and H5O2+ core isomers. Phys Chem Chem Phys 2011; 13:7129-35. [DOI: 10.1039/c1cp20207c] [Citation(s) in RCA: 96] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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23
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Olesen SG, Gausco TL, Weddle GH, Hammerum S, Johnson MA. Vibrational predissociation spectra of the Ar-tagged [CH4· H3O+] binary complex: spectroscopic signature of hydrogen bonding to an alkane. Mol Phys 2010. [DOI: 10.1080/00268971003698056] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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24
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Douberly GE, Walters RS, Cui J, Jordan KD, Duncan MA. Infrared Spectroscopy of Small Protonated Water Clusters, H+(H2O)n (n = 2−5): Isomers, Argon Tagging, and Deuteration. J Phys Chem A 2010; 114:4570-9. [DOI: 10.1021/jp100778s] [Citation(s) in RCA: 143] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- G. E. Douberly
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, and Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260
| | - R. S. Walters
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, and Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260
| | - J. Cui
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, and Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260
| | - K. D. Jordan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, and Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260
| | - M. A. Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, and Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260
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25
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Vendrell O, Gatti F, Meyer HD. Full dimensional (15 dimensional) quantum-dynamical simulation of the protonated water-dimer IV: Isotope effects in the infrared spectra of D(D2O)2+, H(D2O)2+, and D(H2O)2+ isotopologues. J Chem Phys 2009; 131:034308. [DOI: 10.1063/1.3183166] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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26
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Douberly GE, Ricks AM, Duncan MA. Infrared Spectroscopy of Perdeuterated Protonated Water Clusters in the Vicinity of the Clathrate Cage. J Phys Chem A 2009; 113:8449-53. [DOI: 10.1021/jp9052709] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Gary E. Douberly
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556
| | - Allen M. Ricks
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556
| | - Michael A. Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556
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27
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Fridgen TD. Infrared consequence spectroscopy of gaseous protonated and metal ion cationized complexes. MASS SPECTROMETRY REVIEWS 2009; 28:586-607. [PMID: 19343731 DOI: 10.1002/mas.20224] [Citation(s) in RCA: 135] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
In this article, the new and exciting techniques of infrared consequence spectroscopy (sometimes called action spectroscopy) of gaseous ions are reviewed. These techniques include vibrational predissociation spectroscopy and infrared multiple photon dissociation spectroscopy and they typically complement one another in the systems studied and the information gained. In recent years infrared consequence spectroscopy has provided long-awaited direct evidence into the structures of gaseous ions from organometallic species to strong ionic hydrogen bonded structures to large biomolecules. Much is being learned with respect to the structures of ions without their stabilizing solvent which can be used to better understand the effect of solvent on their structures. This review mainly covers the topics with which the author has been directly involved in research: structures of proton-bound dimers, protonated amino acids and DNA bases, amino acid and DNA bases bound to metal ions and, more recently, solvated ionic complexes. It is hoped that this review reveals the impact that infrared consequence spectroscopy has had on the field of gaseous ion chemistry.
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Affiliation(s)
- Travis D Fridgen
- Department of Chemistry, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada A1B 3X7.
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28
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Kaledin M, Kaledin AL, Bowman JM, Ding J, Jordan KD. Calculation of the Vibrational Spectra of H5O2+ and Its Deuterium-Substituted Isotopologues by Molecular Dynamics Simulations. J Phys Chem A 2009; 113:7671-7. [DOI: 10.1021/jp900737r] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Martina Kaledin
- Department of Chemistry and Biochemistry, Kennesaw State University, Kennesaw, Georgia 30144
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29
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McCoy AB, Diken EG, Johnson MA. Generating Spectra from Ground-State Wave Functions: Unraveling Anharmonic Effects in the OH−·H2O Vibrational Predissociation Spectrum. J Phys Chem A 2009; 113:7346-52. [DOI: 10.1021/jp811352c] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Anne B. McCoy
- Department of Chemistry, The Ohio State University, Columbus, Ohio 43210
| | - Eric G. Diken
- Department of Chemistry, Yale University, New Haven, Connecticut 06520
| | - Mark A. Johnson
- Department of Chemistry, Yale University, New Haven, Connecticut 06520
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30
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Ricks AM, Douberly GE, Duncan MA. Infrared spectroscopy of the protonated nitrogen dimer: The complexity of shared proton vibrations. J Chem Phys 2009. [DOI: 10.1063/1.3224155] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
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