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Zhang Y, Song Z, Lin Y, Shi Q, Hao Y, Fu Y, Wu J, Zhang Z. Predicting mechanical properties of CO 2hydrates: machine learning insights from molecular dynamics simulations. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2023; 36:015101. [PMID: 37714183 DOI: 10.1088/1361-648x/acfa55] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 09/15/2023] [Indexed: 09/17/2023]
Abstract
Understanding the mechanical properties of CO2hydrate is crucial for its diverse sustainable applications such as CO2geostorage and natural gas hydrate mining. In this work, classic molecular dynamics (MD) simulations are employed to explore the mechanical characteristics of CO2hydrate with varying occupancy rates and occupancy distributions of guest molecules. It is revealed that the mechanical properties, including maximum stress, critical strain, and Young's modulus, are not only affected by the cage occupancy rate in both large 51262and small 512cages, but also by the distribution of guest molecules within the cages. Specifically, the presence of vacancies in the 51262large cages significantly impacts the overall mechanical stability compared to 512small cages. Furthermore, four distinct machine learning (ML) models trained using MD results are developed to predict the mechanical properties of CO2hydrate with different cage occupancy rates and cage occupancy distributions. Through analyzing ML results, as-developed ML models highlight the importance of the distribution of guest molecules within the cages, as crucial contributor to the overall mechanical stability of CO2hydrate. This study contributes new knowledge to the field by providing insights into the mechanical properties of CO2hydrates and their dependence on cage occupancy rates and cage occupancy distributions. The findings have implications for the sustainable applications of CO2hydrate, and as-developed ML models offer a practical framework for predicting the mechanical properties of CO2hydrate in different scenarios.
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Affiliation(s)
- Yu Zhang
- Department of Physics, Research Institute for Biomimetics and Soft Matter, Jiujiang Research Institute and Fujian Provincial Key Laboratory for Soft Functional Materials Research, Xiamen University, Xiamen 361005, People's Republic of China
| | - Zixuan Song
- Department of Physics, Research Institute for Biomimetics and Soft Matter, Jiujiang Research Institute and Fujian Provincial Key Laboratory for Soft Functional Materials Research, Xiamen University, Xiamen 361005, People's Republic of China
| | - Yanwen Lin
- Department of Physics, Research Institute for Biomimetics and Soft Matter, Jiujiang Research Institute and Fujian Provincial Key Laboratory for Soft Functional Materials Research, Xiamen University, Xiamen 361005, People's Republic of China
| | - Qiao Shi
- Department of Physics, Research Institute for Biomimetics and Soft Matter, Jiujiang Research Institute and Fujian Provincial Key Laboratory for Soft Functional Materials Research, Xiamen University, Xiamen 361005, People's Republic of China
| | - Yongchao Hao
- Department of Physics, Research Institute for Biomimetics and Soft Matter, Jiujiang Research Institute and Fujian Provincial Key Laboratory for Soft Functional Materials Research, Xiamen University, Xiamen 361005, People's Republic of China
| | - Yuequn Fu
- PoreLab, The Njord Centre, Department of Physics, University of Oslo, Oslo 0588, Norway
| | - Jianyang Wu
- Department of Physics, Research Institute for Biomimetics and Soft Matter, Jiujiang Research Institute and Fujian Provincial Key Laboratory for Soft Functional Materials Research, Xiamen University, Xiamen 361005, People's Republic of China
- NTNU Nanomechanical Lab, Norwegian University of Science and Technology (NTNU), Trondheim 7491, Norway
| | - Zhisen Zhang
- Department of Physics, Research Institute for Biomimetics and Soft Matter, Jiujiang Research Institute and Fujian Provincial Key Laboratory for Soft Functional Materials Research, Xiamen University, Xiamen 361005, People's Republic of China
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Michalis VK, Economou IG, Stubos AK, Tsimpanogiannis IN. Phase equilibria molecular simulations of hydrogen hydrates via the direct phase coexistence approach. J Chem Phys 2022; 157:154501. [PMID: 36272800 DOI: 10.1063/5.0108738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We report the three-phase (hydrate-liquid water-vapor) equilibrium conditions of the hydrogen-water binary system calculated with molecular dynamics simulations via the direct phase coexistence approach. A significant improvement of ∼10.5 K is obtained in the current study, over earlier simulation attempts, by using a combination of modifications related to the hydrogen model that include (i) hydrogen Lennard-Jones parameters that are a function of temperature and (ii) the water-guest energy interaction parameters optimized further by using the Lorentz-Berthelot combining rules, based on an improved description of the solubility of hydrogen in water.
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Affiliation(s)
| | - Ioannis G Economou
- Chemical Engineering Program, Texas A&M University at Qatar, P.O. Box 23874, Doha, Qatar
| | - Athanasios K Stubos
- Environmental Research Laboratory, National Center for Scientific Research "Demokritos," 15310 Aghia Paraskevi Attikis, Greece
| | - Ioannis N Tsimpanogiannis
- Chemical Process and Energy Resources Institute (CPERI), Centre for Research & Technology Hellas (CERTH), 57001 Thermi-Thessaloniki, Greece
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Cabrera-Ramírez A, Arismendi-Arrieta DJ, Valdés Á, Prosmiti R. Exploring CO 2 @sI Clathrate Hydrates as CO 2 Storage Agents by Computational Density Functional Approaches. Chemphyschem 2021; 22:359-369. [PMID: 33368985 DOI: 10.1002/cphc.202001035] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Indexed: 12/21/2022]
Abstract
The formation of specific clathrate hydrates and their transformation at given thermodynamic conditions depends on the interactions between the guest molecule/s and the host water lattice. Understanding their structural stability is essential to control structure-property relations involved in different technological applications. Thus, the energetic aspects relative to CO2 @sI clathrate hydrate are investigated through the computation of the underlying interactions, dominated by hydrogen bonds and van der Waals forces, from first-principles electronic structure approaches. The stability of the CO2 @sI clathrate is evaluated by combining bottom-up and top-down approaches. Guest-free and CO2 guest-filled aperiodic cages, up to the gradually CO2 occupation of the entire sI periodic unit cells were considered. Saturation, cohesive and binding energies for the systems are determined by employing a variety of density functionals and their performance is assessed. The dispersion corrections on the non-covalent interactions are found to be important in the stabilization of the CO2 @sI energies, with the encapsulation of the CO2 into guest-free/empty cage/lattice being always an energetically favorable process for most of the functionals studied. The PW86PBE functional with XDM or D3(BJ) dispersion corrections predicts a lattice constant in accord to the experimental values available, and simultaneously provides a reliable description for the guest-host interactions in the periodic CO2 @sI crystal, as well as the energetics of its progressive single cage occupancy process. It has been found that the preferential orientation of the single CO2 in the large sI crystal cages has a stabilizing effect on the hydrate, concluding that the CO2 @sI structure is favored either by considering the individual building block cages or the complete sI unit cell crystal. Such benchmark and methodology cross-check studies benefit new data-driven model research by providing high-quality training information, with new insights that indicate the underlying factors governing their structure-driven stability, and triggering further investigations for controlling the stabilization of these promising long-term CO2 storage materials.
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Affiliation(s)
| | - Daniel J Arismendi-Arrieta
- Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 4, 20018, Donostia-San Sebastián, Spain
| | - Álvaro Valdés
- Escuela de Física, Universidad Nacional de Colombia, Sede Medellín, A. A., 3840, Medellíın, Colombia
| | - Rita Prosmiti
- Institute of Fundamental Physics (IFF-CSIC), CSIC, Serrano 123, 28006, Madrid, Spain
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Cabrera-Ramírez A, Yanes-Rodríguez R, Prosmiti R. Computational density-functional approaches on finite-size and guest-lattice effects in CO 2@sII clathrate hydrate. J Chem Phys 2021; 154:044301. [PMID: 33514100 DOI: 10.1063/5.0039323] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
We performed first-principles computations to investigate guest-host/host-host effects on the encapsulation of the CO2 molecule in sII clathrate hydrates from finite-size clusters up to periodic 3D crystal lattice systems. Structural and energetic properties were first computed for the individual and first-neighbors clathrate-like sII cages, where highly accurate ab initio quantum chemical methods are available nowadays, allowing in this way the assessment of the density functional (DFT) theoretical approaches employed. The performance of exchange-correlation functionals together with recently developed dispersion-corrected schemes was evaluated in describing interactions in both short-range and long-range regions of the potential. On this basis, structural relaxations of the CO2-filled and empty sII unit cells yield lattice and compressibility parameters comparable to experimental and previous theoretical values available for sII hydrates. According to these data, the CO2 enclathration in the sII clathrate cages is a stabilizing process, either by considering both guest-host and host-host interactions in the complete unit cell or only the guest-water energies for the individual clathrate-like sII cages. CO2@sII clathrates are predicted to be stable whatever the dispersion correction applied and in the case of single cage occupancy are found to be more stable than the CO2@sI structures. Our results reveal that DFT approaches could provide a good reasonable description of the underlying interactions, enabling the investigation of formation and transformation processes as a function of temperature and pressure.
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Affiliation(s)
| | | | - Rita Prosmiti
- Institute of Fundamental Physics (IFF-CSIC), CSIC, Serrano 123, 28006 Madrid, Spain
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Trusler JM. Thermophysical Properties and Phase Behavior of Fluids for Application in Carbon Capture and Storage Processes. Annu Rev Chem Biomol Eng 2017; 8:381-402. [DOI: 10.1146/annurev-chembioeng-060816-101426] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- J.P. Martin Trusler
- Department of Chemical Engineering, Imperial College London, London SW7 2AZ, United Kingdom
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The Abundance of Atmospheric CO2in Ocean Exoplanets: a Novel CO2Deposition Mechanism. ACTA ACUST UNITED AC 2017. [DOI: 10.3847/1538-4357/aa5cfe] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Chaschin IS, Bakuleva NP, Grigoriev TE, Krasheninnikov SV, Nikitin LN. Collagen tissue treated with chitosan solution in H 2 O/CO 2 mixtures: Influence of clathrates hydrates on the structure and mechanical properties. J Mech Behav Biomed Mater 2017; 67:10-18. [DOI: 10.1016/j.jmbbm.2016.11.015] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Revised: 11/14/2016] [Accepted: 11/16/2016] [Indexed: 01/01/2023]
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Chaschin IS, Grigoriev TE, Bakuleva NP, Abramchyk SS, Nikitin LN. Effect of the clathrate hydrate environment on the structure of collagen xenograft tissue with chitosan coating deposited from solution in the H2O/CO2 system at high pressure. DOKLADY CHEMISTRY 2016. [DOI: 10.1134/s0012500816060057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Hansen TC, Falenty A, Kuhs WF. Lattice constants and expansivities of gas hydrates from 10 K up to the stability limit. J Chem Phys 2016; 144:054301. [DOI: 10.1063/1.4940729] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- T. C. Hansen
- Institut Laue-Langevin, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - A. Falenty
- GZG, Abt. Kristallographie, Universität Göttingen, Goldschmidtstrasse 1, 37077 Göttingen, Germany
| | - W. F. Kuhs
- GZG, Abt. Kristallographie, Universität Göttingen, Goldschmidtstrasse 1, 37077 Göttingen, Germany
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Costandy J, Michalis VK, Tsimpanogiannis IN, Stubos AK, Economou IG. The role of intermolecular interactions in the prediction of the phase equilibria of carbon dioxide hydrates. J Chem Phys 2015; 143:094506. [DOI: 10.1063/1.4929805] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Joseph Costandy
- Chemical Engineering Program, Texas A&M University at Qatar, P.O. Box 23874, Doha, Qatar
| | - Vasileios K. Michalis
- Chemical Engineering Program, Texas A&M University at Qatar, P.O. Box 23874, Doha, Qatar
| | - Ioannis N. Tsimpanogiannis
- Environmental Research Laboratory, National Center for Scientific Research “Demokritos,” GR-15310 Aghia Paraskevi Attikis, Greece
| | - Athanassios K. Stubos
- Environmental Research Laboratory, National Center for Scientific Research “Demokritos,” GR-15310 Aghia Paraskevi Attikis, Greece
| | - Ioannis G. Economou
- Chemical Engineering Program, Texas A&M University at Qatar, P.O. Box 23874, Doha, Qatar
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Guan J, Song Y. Pressure Selected Reactivity and Kinetics Deduced from Photoinduced Dissociation of Ethylene Glycol. J Phys Chem B 2015; 119:3535-45. [DOI: 10.1021/jp511211u] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Jiwen Guan
- Department
of Physics and Astronomy, University of Western Ontario, London, Ontario N6A 3K7, Canada
| | - Yang Song
- Department
of Physics and Astronomy, University of Western Ontario, London, Ontario N6A 3K7, Canada
- Department
of Chemistry, University of Western Ontario, London, Ontario N6A 5B7, Canada
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Tulk CA, Machida S, Klug DD, Lu H, Guthrie M, Molaison JJ. The structure of CO₂ hydrate between 0.7 and 1.0 GPa. J Chem Phys 2014; 141:174503. [PMID: 25381527 DOI: 10.1063/1.4899265] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
A deuterated sample of CO2 structure I (sI) clathrate hydrate (CO2·8.3 D2O) has been formed and neutron diffraction experiments up to 1.0 GPa at 240 K were performed. The sI CO2 hydrate transformed at 0.7 GPa into the high pressure phase that had been observed previously by Hirai et al. [J. Phys. Chem. 133, 124511 (2010)] and Bollengier et al. [Geochim. Cosmochim. Acta 119, 322 (2013)], but which had not been structurally identified. The current neutron diffraction data were successfully fitted to a filled ice structure with CO2 molecules filling the water channels. This CO2+water system has also been investigated using classical molecular dynamics and density functional ab initio methods to provide additional characterization of the high pressure structure. Both models indicate the water network adapts a MH-III "like" filled ice structure with considerable disorder of the orientations of the CO2 molecule. Furthermore, the disorder appears to be a direct result of the level of proton disorder in the water network. In contrast to the conclusions of Bollengier et al., our neutron diffraction data show that the filled ice phase can be recovered to ambient pressure (0.1 MPa) at 96 K, and recrystallization to sI hydrate occurs upon subsequent heating to 150 K, possibly by first forming low density amorphous ice. Unlike other clathrate hydrate systems, which transform from the sI or sII structure to the hexagonal structure (sH) then to the filled ice structure, CO2 hydrate transforms directly from the sI form to the filled ice structure.
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Affiliation(s)
- C A Tulk
- Neutron Scattering Science Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - S Machida
- Neutron Scattering Science Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - D D Klug
- National Research Council of Canada, Ottawa, Ontario K1A 0R6, Canada
| | - H Lu
- National Research Council of Canada, Ottawa, Ontario K1A 0R6, Canada
| | - M Guthrie
- Geophysical Laboratory, Carnegie Institution of Washington, Washington, District of Columbia 20015, USA
| | - J J Molaison
- Neutron Scattering Science Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
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Papadimitriou NI, Tsimpanogiannis IN, Economou IG, Stubos AK. Influence of combining rules on the cavity occupancy of clathrate hydrates by Monte Carlo simulations. Mol Phys 2014. [DOI: 10.1080/00268976.2014.902136] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Tanchuk B, Sawada JA, Rezaei S, Kuznicki SM. Adsorptive drying of CO2 using low grade heat and humid, ambient air. Sep Purif Technol 2013. [DOI: 10.1016/j.seppur.2013.10.026] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Tsimpanogiannis IN, Papadimitriou NI, Stubos AK. On the limitation of the van der Waals-Platteeuw-based thermodynamic models for hydrates with multiple occupancy of cavities. Mol Phys 2012. [DOI: 10.1080/00268976.2012.666278] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Ceppatelli M, Bini R, Schettino V. High-pressure reactivity of clathrate hydrates by two-photon dissociation of water. Phys Chem Chem Phys 2011; 13:1264-75. [DOI: 10.1039/c0cp01318h] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Mitterdorfer C, Bauer M, Loerting T. Clathrate hydrate formation after CO2–H2O vapour deposition. Phys Chem Chem Phys 2011; 13:19765-72. [DOI: 10.1039/c1cp21856e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Hirai H, Komatsu K, Honda M, Kawamura T, Yamamoto Y, Yagi T. Phase changes of CO2 hydrate under high pressure and low temperature. J Chem Phys 2010; 133:124511. [DOI: 10.1063/1.3493452] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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