A Model for Dynamic Protein Control of Energy Transfer to Photosynthetic Reaction Centers

Light harvesting in a fluctuating antenna

One of the major players in oxygenic photosynthesis, photosystem II (PSII), exhibits complex multiexponential fluorescence decay kinetics that for decades has been ascribed to reversible charge separation taking place in the reaction center (RC). However, in this description the protein dynamics is not taken into consideration. The intrinsic dynamic disorder of the light-harvesting proteins along with their fluctuating dislocations within the antenna inevitably result in varying connectivity between pigment-protein complexes and therefore can also lead to nonexponential excitation decay kinetics. On the basis of this presumption, we propose a simple conceptual model describing excitation diffusion in a continuous medium and accounting for possible variations of the excitation transfer rates. Recently observed fluorescence kinetics of PSII of different sizes are perfectly reproduced with only two adjustable parameters instead of the many decay times and amplitudes required in standard analysis procedures; no charge recombination in the RC is required. The model is also able to provide valuable information about the structural and functional organization of the photosynthetic antenna and in a straightforward way solves various contradictions currently existing in the literature.

Nonlinear thermal control in an N-terminal junction

We demonstrate control over heat flow in an N -terminal molecular junction. Using simple model Hamiltonians we show that the heat current through two terminals can be tuned by the temperature and coupling parameters of external gating reservoirs. We discuss two models: A fully harmonic system and a model incorporating anharmonic interactions. For both models the control reservoirs induce thermal fluctuations of the transition elements between molecular vibrational states. We find that a fully harmonic model does not show any controllability, while for an anharmonic system the conduction properties of the junction strongly depend on the parameters of the gates. Realizations of the model system within nanodevices and macromolecules are discussed.