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Szabelski P. Theoretical Modeling of the Structure Formation in Adsorbed Overlayers Comprising Molecular Building Blocks with Different Symmetries. Molecules 2025; 30:866. [PMID: 40005176 PMCID: PMC11858382 DOI: 10.3390/molecules30040866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2025] [Revised: 02/10/2025] [Accepted: 02/11/2025] [Indexed: 02/27/2025] Open
Abstract
Controlling the geometry and functionality of multi-component self-assembled superstructures on surfaces is a complex task that requires numerous experimental tests. In this contribution, we demonstrate how computer modeling can be utilized to preselect functional tectons capable of forming low-dimensional architectures with tailored features. To this end, coarse-grained Monte Carlo simulations were conducted for a mixture of tripod and tetrapod units, each equipped with discrete centers for short-range directional interactions, and adsorbed onto a (111) crystalline substrate. The calculations conducted for various isomers of the tetrapod molecule revealed qualitatively distinct self-assembly scenarios, including mixing and segregation, depending on the directionality of interactions assigned to this tecton. The resulting superstructures were classified, and their formation was monitored using temperature-dependent metrics, such as coordination functions. The findings of this study contribute to a better understanding of the on-surface self-assembly of molecules with differing symmetries and can aid in the design of bicomponent overlayers for specific applications.
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Affiliation(s)
- Paweł Szabelski
- Department of Theoretical Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, Maria Curie-Skłodowska University in Lublin, Pl. M.C. Skłodowskiej 3, 20-031 Lublin, Poland
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2
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Li D, Seki S, Ishikawa A, Omoto K, Yasuhara K, Rapenne G, Kawai S. Procrystalline Self-Assembly of Desymmetrized Pentaphenylcyclopentadiene. J Phys Chem Lett 2024; 15:7628-7634. [PMID: 39030664 DOI: 10.1021/acs.jpclett.4c01364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/21/2024]
Abstract
The interplay between the molecular shape and the intermolecular interaction plays a decisive role in self-assembled structures. Recently, inherent randomness of low ordered assemblies, resulting from lack of short- and long-range periodicities, has attracted significant attention due to the unique structural, electronic, and mechanical properties. Here, we present procrystalline self-assemblies of pentaphenyl cyclopentadienyl derivatives on Ag(111) and Au(111) with scanning tunneling microscopy, operating at 4.3 K under ultrahigh vacuum conditions. Two examples, using 5-fold symmetric molecules substituted with methyl or fluorine groups, show that weak interactions, such as π-π stacking, CH-π interactions, and CH···F hydrogen bonding, play a pivotal role in formation of the procrystalline assembly. Our results may give insights into the intricate relationship between the molecular shape and the intermolecular interaction in the formation of non-crystalline assemblies.
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Affiliation(s)
- Donglin Li
- Center for Basic Research on Materials, National Institute for Materials Science, 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
| | - Sota Seki
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
| | - Atsushi Ishikawa
- Department of Transdisciplinary Science and Engineering, School of Environment and Society, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8552, Japan
| | - Kenichiro Omoto
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
| | - Kazuma Yasuhara
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
- Center for Digital Green-innovation, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
| | - Gwénaël Rapenne
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
- CEMES, Université de Toulouse, CNRS, 29, rue Marvig, 31055 Toulouse, France
| | - Shigeki Kawai
- Center for Basic Research on Materials, National Institute for Materials Science, 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
- Graduate School of Pure and Applied Sciences, University of Tsukuba, Tsukuba 305-8571, Japan
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3
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Lisiecki J, Szabelski P. Designing 2D covalent networks with lattice Monte Carlo simulations: precursor self-assembly. Phys Chem Chem Phys 2021; 23:5780-5796. [PMID: 33666606 DOI: 10.1039/d0cp06608g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Organic synthesis reactions in the adsorbed phase have been recently an intensively studied topic in heterogeneous catalysis and material engineering. One of such processes is the Ullmann coupling in which halogenated organic monomers are transformed into covalently bonded polymeric structures. In this work, we use the lattice Monte Carlo simulation method to study the on-surface self-assembly of organometallic precursor architectures comprising tetrasubstituted naphthalene building blocks with differently distributed halogen atoms. In the coarse grained approach adopted herein the molecules and metal atoms were modeled by discrete segments, two connected and one, respectively, placed on a triangular lattice representing a (111) metallic surface. Our simulations focused on the influence of the intramolecular distribution of the substituents on the morphology of the resulting superstructures. Special attention was paid to the molecules that create porous networks characterized by long-range order. Moreover, the structural analysis of the assemblies comprising prochiral building blocks was made by running simulations for the corresponding enantiopure and racemic adsorbed systems. The obtained results demonstrated the possibility of directing the on-surface self-assembly towards networks with controllable pore shape and size. These findings can be helpful in designing covalently bonded 2D superstructures with predefined architecture and functions.
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Affiliation(s)
- Jakub Lisiecki
- Department of Theoretical Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, Maria Curie-Skłodowska University in Lublin, Pl. M.C. Skłodowskiej 3, 20-031 Lublin, Poland.
| | - Paweł Szabelski
- Department of Theoretical Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, Maria Curie-Skłodowska University in Lublin, Pl. M.C. Skłodowskiej 3, 20-031 Lublin, Poland.
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4
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Reynaerts R, Mali KS, De Feyter S. Growth of a self-assembled monolayer decoupled from the substrate: nucleation on-command using buffer layers. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2020; 11:1291-1302. [PMID: 32953373 PMCID: PMC7476593 DOI: 10.3762/bjnano.11.113] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 08/12/2020] [Indexed: 06/11/2023]
Abstract
Structural polymorphism is ubiquitous in physisorbed self-assembled monolayers formed at the solution-solid interface. One of the ways to influence network formation at this interface is to physically decouple the self-assembled monolayer from the underlying substrate thereby removing the influence of the substrate lattice, if any. Here we show a systematic exploration of self-assembly of a typical building block, namely 4-tetradecyloxybenzoic acid at the 1-phenyloctane-graphite interface in the presence and in the absence of a buffer layer formed by a long chain alkane, namely n-pentacontane. Using scanning tunneling microscopy (STM), three different structural polymorphs were identified for 4-tetradecyloxybenzoic acid at the 1-phenyloctane-graphite interface. Surprisingly, the same three structures were formed on top of the buffer layer, albeit at different concentrations. Systematic variation of experimental parameters did not lead to any new network in the presence of the buffer layer. We discovered that the self-assembly on top of the buffer layer allows better control over the nanoscale manipulation of the self-assembled networks. Using the influence of the STM tip, we could initiate the nucleation of small isolated domains of the benzoic acid on-command in a reproducible fashion. Such controlled nucleation experiments hold promise for studying fundamental processes inherent to the assembly process on surfaces.
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Affiliation(s)
- Robby Reynaerts
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Kunal S Mali
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Steven De Feyter
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
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5
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John AS, Roth MW, Firlej L, Kuchta B, Charra F, Wexler C. Self-Assembled Two-Dimensional Nanoporous Crystals as Molecular Sieves: Molecular Dynamics Studies of 1,3,5-Tristyrilbenzene-C n Superstructures. J Chem Inf Model 2020; 60:2155-2168. [PMID: 32155335 DOI: 10.1021/acs.jcim.0c00015] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Due to their unique geometry complex, self-assembled nanoporous 2D molecular crystals offer a broad landscape of potential applications, ranging from adsorption and catalysis to optoelectronics, substrate processes, and future nanomachine applications. Here we report and discuss the results of extensive all-atom Molecular Dynamics (MD) investigations of self-assembled organic monolayers (SAOM) of interdigitated 1,3,5-tristyrilbenzene (TSB) molecules terminated by alkoxy peripheral chains Cn containing n carbon atoms (TSB3,5-Cn) deposited onto highly ordered pyrolytic graphite (HOPG). In vacuo structural and electronic properties of the TSB3,5-Cn molecules were initially determined using ab initio second order Møller-Plesset (MP2) calculations. The MD simulations were then used to analyze the behavior of the self-assembled superlattices, including relaxed lattice geometry (in good agreement with experimental results) and stability at ambient temperatures. We show that the intermolecular disordering of the TSB3,5-Cn monolayers arises from competition between decreased rigidity of the alkoxy chains (loss of intramolecular order) and increased stabilization with increasing chain length (afforded by interdigitation). We show that the inclusion of guest organic molecules (e.g., benzene, pyrene, coronene, hexabenzocoronene) into the nanopores (voids formed by interdigitated alkoxy chains) of the TSB3,5-Cn superlattices stabilizes the superstructure, and we highlight the importance of alkoxy chain mobility and available pore space in the dynamics of the systems and their potential application in selective adsorption.
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Affiliation(s)
- Alexander St John
- Department of Physics and Astronomy, University of Missouri, Columbia, Missouri 65211, United States
| | - Michael W Roth
- Department of Physics and Astronomy, University of Missouri, Columbia, Missouri 65211, United States.,Physics Department, Waldorf University, Forest City, Iowa 50436, United States
| | - Lucyna Firlej
- Department of Physics and Astronomy, University of Missouri, Columbia, Missouri 65211, United States.,Laboratoire Charles Coulomb, CNRS-Université de Montpellier, 34090 Montpellier, France
| | - Bogdan Kuchta
- Department of Physics and Astronomy, University of Missouri, Columbia, Missouri 65211, United States.,Faculty of Chemistry, Wroclaw University of Science and Technology, 50-370 Wroclaw, Poland.,Laboratoire MADRIEL, Aix-Marseille Université-CNRS, 13007 Marseille, France
| | - Fabrice Charra
- Service de Physique de l'État Condensé (SPEC), Université Paris Saclay, CEA CNRS UMR-3680 CEA Saclay F-91191 Gif-sur-Yvette, France
| | - Carlos Wexler
- Department of Physics and Astronomy, University of Missouri, Columbia, Missouri 65211, United States
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6
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St John A, Roth MW, Firlej L, Kuchta B, Charra F, Wexler C. Computer modeling of 2D supramolecular nanoporous monolayers self-assembled on graphite. NANOSCALE 2019; 11:21284-21290. [PMID: 31667485 DOI: 10.1039/c9nr05710b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Nano-porous two-dimensional molecular crystals, self-assembled on atomically flat host surfaces offer a broad range of possible applications, from molecular electronics to future nano-machines. Computer-assisted designing of such complex structures requires numerically intensive modeling methods. Here we present the results of extensive, fully atomistic simulations of self-assembled monolayers of interdigitated molecules of 1,3,5-tristyrilbenzene substituted by C6 alkoxy peripheral chains (TSB3,5-C6), deposited onto highly-ordered pyrolytic graphite. Structural and electronic properties of the TSB3,5-C6 molecules were determined from ab initio calculations, then used in Molecular Dynamics simulations to analyze the mechanism of formation, epitaxy, and stability of the TSB3,5-C6 nanoporous superlattice. We show that the monolayer disordering results from the competition between flexibility of the C6 chains and their stabilization by interdigitation. The inclusion of guest molecules (benzene and pyrene) into superlattice nanopores stabilizes the monolayer. The alkoxy chain mobility and available pore space defines the systems dynamics, essential for potential application.
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Affiliation(s)
- Alexander St John
- Department of Physics and Astronomy, University of Missouri, Columbia, MO 65211, USA.
| | - Michael W Roth
- Department of Physics and Astronomy, University of Missouri, Columbia, MO 65211, USA. and Physics Department, Waldorf University, Forest City, IA 50436, USA
| | - Lucyna Firlej
- Department of Physics and Astronomy, University of Missouri, Columbia, MO 65211, USA. and Laboratoire Charles Coulomb, CNRS-Université de Montpellier, Montpellier, France
| | - Bogdan Kuchta
- Department of Physics and Astronomy, University of Missouri, Columbia, MO 65211, USA. and Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw, Poland and Laboratoire MADRIEL, Aix-Marseille Université-CNRS, Marseille, France
| | - Fabrice Charra
- Service de Physique de l'État Condensé (SPEC), CEA CNRS UMR-3680, Université Paris Saclay, CEA Saclay F-91191 Gif-sur-Yvette, France
| | - Carlos Wexler
- Department of Physics and Astronomy, University of Missouri, Columbia, MO 65211, USA.
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7
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Karner C, Dellago C, Bianchi E. Design of Patchy Rhombi: From Close-Packed Tilings to Open Lattices. NANO LETTERS 2019; 19:7806-7815. [PMID: 31580675 DOI: 10.1021/acs.nanolett.9b02829] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
In the realm of functional materials, the production of two-dimensional structures with tunable porosity is of paramount relevance for many practical applications: surfaces with regular arrays of pores can be used for selective adsorption or immobilization of guest units that are complementary in shape and/or size to the pores, thus achieving, for instance, selective filtering or well-defined responses to external stimuli. The principles that govern the formation of such structures are valid at both the molecular and the colloidal scale. Here we provide simple design directions to combine the anisotropic shape of the building units-either molecules or colloids-and selective directional bonding. Using extensive computer simulations, we show that regular rhombic platelets decorated with attractive and repulsive interaction sites form specific tilings, going smoothly from close-packed arrangements to open lattices. The rationale behind the rich tiling scenario observed can be described in terms of steric incompatibilities, unsatisfied bonding geometries, and interplays between local and long-range order.
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Affiliation(s)
- Carina Karner
- Faculty of Physics , University of Vienna , Boltzmanngasse 5 , A-1090 Vienna , Austria
| | - Christoph Dellago
- Faculty of Physics , University of Vienna , Boltzmanngasse 5 , A-1090 Vienna , Austria
| | - Emanuela Bianchi
- Institut für Theoretische Physik , TU Wien , Wiedner Hauptstraße 8-10 , A-1040 Wien , Austria
- CNR-ISC, Uos Sapienza , Piazzale A. Moro 2 , 00185 Roma , Italy
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8
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Effect of backbone aspect ratio on the surface-confined self-assembly of tetratopic molecular building blocks. Colloids Surf A Physicochem Eng Asp 2019. [DOI: 10.1016/j.colsurfa.2019.123632] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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9
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Keller TJ, Bahr J, Gratzfeld K, Schönfelder N, Majewski MA, Stępień M, Höger S, Jester SS. Nanopatterns of arylene-alkynylene squares on graphite: self-sorting and intercalation. Beilstein J Org Chem 2019; 15:1848-1855. [PMID: 31467606 PMCID: PMC6693369 DOI: 10.3762/bjoc.15.180] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 07/16/2019] [Indexed: 11/23/2022] Open
Abstract
Supramolecular nanopatterns of arylene–alkynylene squares with side chains of different lengths are investigated by scanning tunneling microscopy at the solid/liquid interface of highly oriented pyrolytic graphite and 1,2,4-trichlorobenzene. Self-sorting leads to the intermolecular interdigitation of alkoxy side chains of identical length. Voids inside and between the squares are occupied by intercalated solvent molecules, which numbers depend on the sizes and shapes of the nanopores. In addition, planar and non-planar coronoid polycyclic aromatic hydrocarbons (i.e., butyloxy-substituted kekulene and octulene derivatives) are found to be able to intercalate into the intramolecular nanopores.
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Affiliation(s)
- Tristan J Keller
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Joshua Bahr
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Kristin Gratzfeld
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Nina Schönfelder
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Marcin A Majewski
- Wydział Chemii, Uniwersytet Wrocławski, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Marcin Stępień
- Wydział Chemii, Uniwersytet Wrocławski, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Sigurd Höger
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Stefan-S Jester
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
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10
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Rżysko W, Nieckarz D, Szabelski P. Modeling of the 2D self-assembly of tripod-shaped functional molecules with patchy interaction centers. ADSORPTION 2018. [DOI: 10.1007/s10450-018-9993-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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11
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Nieckarz D, Rżysko W, Szabelski P. On-surface self-assembly of tetratopic molecular building blocks. Phys Chem Chem Phys 2018; 20:23363-23377. [PMID: 30177976 DOI: 10.1039/c8cp03820a] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Self-assembly of functional molecules on solid substrates has recently attracted special attention as a versatile method for the fabrication of low dimensional nanostructures with tailorable properties. In this contribution, using theoretical modeling, we demonstrate how the architecture of 2D molecular assemblies can be predicted based on the individual properties of elementary building blocks at play. To that end a model star-shaped tetratopic molecule is used and its self-assembly on a (111) surface is simulated using the lattice Monte Carlo method. Several test cases are studied in which the molecule bears terminal arm centers providing interactions with differently encoded directionality. Our theoretical results show that manipulation of the interaction directions can be an effective way to direct the self-assembly towards extended periodic superstructures (2D crystals) as well as to create assemblies characterized by a lower degree of order, including glassy overlayers and quasi one-dimensional molecular connections. The obtained structures are described and classified with respect to their main geometric parameters. A small library of the tetratopic molecules and the corresponding superstructures is provided to categorize the structure-property relationship in the modeled systems. The results of our simulations can be helpful to 2D crystal engineering and surface-confined polymerization techniques as they give hints on how to functionalize tetrapod organic building blocks which would be able to create superstructures with predefined spatial organization and range of order.
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Affiliation(s)
- Damian Nieckarz
- Department of Theoretical Chemistry, Maria-Curie Skłodowska University, Pl. M.C. Skłodowskiej 3, 20-031 Lublin, Poland.
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12
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Szabelski P, Rżysko W, Nieckarz D. Dichotomous On-Surface Self-Assembly of Tripod Molecules with Anchor Like Interaction Pattern. Top Catal 2018. [DOI: 10.1007/s11244-018-0976-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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13
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Szabelski P, Nieckarz D, Rżysko W. Influence of molecular shape and interaction anisotropy on the self-assembly of tripod building blocks on solid surfaces. Colloids Surf A Physicochem Eng Asp 2017. [DOI: 10.1016/j.colsurfa.2017.04.009] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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14
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Baxter PNW, Karmazin L, DeCian A, Varnek A, Gisselbrecht JP, Strub JM, Cianferani S. A Direct One-Pot Synthesis of Asymmetric Dehydrobenzopyrido[12]annulenes and Their Physicochemical Properties. European J Org Chem 2017. [DOI: 10.1002/ejoc.201700700] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Paul N. W. Baxter
- UPR 22-CNRS-UdS; Institut Charles Sadron; 23 rue du Loess 67034 Strasbourg France
| | - Lydia Karmazin
- UMR 7177 CNRS-UdS; Institut de Chimie de Strasbourg; 67008 Strasbourg France
| | - André DeCian
- UMR 7177 CNRS-UdS; Institut de Chimie de Strasbourg; 67008 Strasbourg France
| | - Alexandre Varnek
- UMR 7177 CNRS-UdS; Institut de Chimie de Strasbourg; 67008 Strasbourg France
| | | | - Jean-Marc Strub
- Laboratoire de Spectrométrie de Masse Bio-Organique, Département des Sciences Analytiques IPHC; UMR 7178 (CNRS-UdS) ECPM; 25 rue Becquerel 67087 Strasbourg France
| | - Sarah Cianferani
- Laboratoire de Spectrométrie de Masse Bio-Organique, Département des Sciences Analytiques IPHC; UMR 7178 (CNRS-UdS) ECPM; 25 rue Becquerel 67087 Strasbourg France
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15
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Hu Y, Miao K, Xu L, Zha B, Long M, Miao X, Deng W. Two side chains, three supramolecules: exploration of fluorenone derivatives towards crystal engineering. Phys Chem Chem Phys 2017; 19:19205-19216. [PMID: 28702598 DOI: 10.1039/c7cp03894a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Structural diversity obtained through two-dimensional molecular self-assembly induced by the chain length effect has gained immense attention, not only because of its significance in crystal engineering but also for its potential application in nanoscience and nanotechnology. Three kinds of fluorenone derivative, named F-C7C7, F-C14C7, and F-C14C14, were synthesized and used for systematic exploration of their crystalline difference. At first, scanning electron microscopy and X-ray powder diffraction were performed to investigate their differences in morphology and three-dimensional crystal structure. Then scanning tunneling microscopy experiments were conducted to compare the self-assembled monolayers. Moreover, different solvents were used to repeatedly investigate the occurrence of structural diversity. F-C7C7 could not self-assemble into a stable monolayer on the graphite surface under ambient conditions due to its weak molecule-substrate interaction. F-C14C7 was observed to self-assemble into twist, plier-like, octamer-curve, and random structures in 1-octanoic acid, 1-phenyloctane, n-tetradecane, and dichloromethane, respectively. However, when the same solvents were used and at similar concentrations, the F-C14C14 molecules were arranged into interval, mixed, linear, and plier-like configurations. These self-assembled nanopatterns formed under the driving forces of dipole-dipole interactions, hydrogen bonds, and chain-chain, molecule-substrate, and molecule-solvent van der Waals interactions. Furthermore, from the viewpoint of thermal analysis, differential scanning calorimetry, as well as polarized optical microscopy, was performed to further elucidate the difference between these three compounds in the solid and liquid crystal states. The present system is believed to provide understanding of how the chain length effect induces different crystalline properties, and to open up the possibility of fabricating diverse self-assembled networks for crystal engineering.
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Affiliation(s)
- Yi Hu
- College of Materials Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Kai Miao
- College of Materials Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Li Xu
- College of Materials Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Bao Zha
- College of Materials Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Mengying Long
- College of Materials Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Xinrui Miao
- College of Materials Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Wenli Deng
- College of Materials Science and Engineering, South China University of Technology, Guangzhou 510640, China.
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16
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Bouju X, Mattioli C, Franc G, Pujol A, Gourdon A. Bicomponent Supramolecular Architectures at the Vacuum–Solid Interface. Chem Rev 2017; 117:1407-1444. [DOI: 10.1021/acs.chemrev.6b00389] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Xavier Bouju
- CEMES-CNRS, 29 Rue J. Marvig, 31055 Toulouse, France
| | | | - Grégory Franc
- CEMES-CNRS, 29 Rue J. Marvig, 31055 Toulouse, France
| | - Adeline Pujol
- Université de Toulouse, UPS, CNRS, CEMES, 118 route de Narbonne, 31062 Toulouse, France
| | - André Gourdon
- CEMES-CNRS, 29 Rue J. Marvig, 31055 Toulouse, France
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17
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Hu Y, Miao K, Xu L, Zha B, Miao X, Deng W. Effects of alkyl chain number and position on 2D self-assemblies. RSC Adv 2017. [DOI: 10.1039/c7ra05811j] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Alkyl chain number and position effects are explored via the fabrication and regulation of 2D self-assemblies at liquid/HOPG interfaces.
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Affiliation(s)
- Yi Hu
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Kai Miao
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Li Xu
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Bao Zha
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Xinrui Miao
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou 510640
- China
| | - Wenli Deng
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou 510640
- China
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18
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Tobe Y, Tahara K, De Feyter S. Adaptive Building Blocks Consisting of Rigid Triangular Core and Flexible Alkoxy Chains for Self-Assembly at Liquid/Solid Interfaces. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2016. [DOI: 10.1246/bcsj.20160214] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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19
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Cai L, Sun Q, Zhang C, Ding Y, Xu W. Dehydrogenative Homocoupling of Alkyl Chains on Cu(110). Chemistry 2016; 22:1918-1921. [DOI: 10.1002/chem.201504152] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2015] [Indexed: 11/07/2022]
Affiliation(s)
- Liangliang Cai
- Tongji-Aarhus Joint Research Center for Nanostructures and Functional Nanomaterials; College of Materials Science and Engineering; Tongji University; Caoan Road 4800 Shanghai 201804 P. R. China
| | - Qiang Sun
- Tongji-Aarhus Joint Research Center for Nanostructures and Functional Nanomaterials; College of Materials Science and Engineering; Tongji University; Caoan Road 4800 Shanghai 201804 P. R. China
| | - Chi Zhang
- Tongji-Aarhus Joint Research Center for Nanostructures and Functional Nanomaterials; College of Materials Science and Engineering; Tongji University; Caoan Road 4800 Shanghai 201804 P. R. China
| | - Yuanqi Ding
- Tongji-Aarhus Joint Research Center for Nanostructures and Functional Nanomaterials; College of Materials Science and Engineering; Tongji University; Caoan Road 4800 Shanghai 201804 P. R. China
| | - Wei Xu
- Tongji-Aarhus Joint Research Center for Nanostructures and Functional Nanomaterials; College of Materials Science and Engineering; Tongji University; Caoan Road 4800 Shanghai 201804 P. R. China
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20
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Hu Y, Miao K, Peng S, Zha B, Xu L, Miao X, Deng W. Structural transition control between dipole–dipole and hydrogen bonds induced chirality and achirality. CrystEngComm 2016. [DOI: 10.1039/c5ce02321a] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This study presents efficient strategies on manipulation of hydrogen bonds and dipole–dipole induced chiral and achiral self-assembly nanostructures.
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Affiliation(s)
- Yi Hu
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou, China
| | - Kai Miao
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou, China
| | - Shan Peng
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou, China
| | - Bao Zha
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou, China
| | - Li Xu
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou, China
| | - Xinrui Miao
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou, China
| | - Wenli Deng
- College of Materials Science and Engineering
- South China University of Technology
- Guangzhou, China
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21
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Xia R, Wu RN, Liu YL, Sun XY. The Role of Computer Simulation in Nanoporous Metals-A Review. MATERIALS 2015; 8:5060-5083. [PMID: 28793491 PMCID: PMC5455492 DOI: 10.3390/ma8085060] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Revised: 07/07/2015] [Accepted: 08/04/2015] [Indexed: 11/16/2022]
Abstract
Nanoporous metals (NPMs) have proven to be all-round candidates in versatile and diverse applications. In this decade, interest has grown in the fabrication, characterization and applications of these intriguing materials. Most existing reviews focus on the experimental and theoretical works rather than the numerical simulation. Actually, with numerous experiments and theory analysis, studies based on computer simulation, which may model complex microstructure in more realistic ways, play a key role in understanding and predicting the behaviors of NPMs. In this review, we present a comprehensive overview of the computer simulations of NPMs, which are prepared through chemical dealloying. Firstly, we summarize the various simulation approaches to preparation, processing, and the basic physical and chemical properties of NPMs. In this part, the emphasis is attached to works involving dealloying, coarsening and mechanical properties. Then, we conclude with the latest progress as well as the future challenges in simulation studies. We believe that highlighting the importance of simulations will help to better understand the properties of novel materials and help with new scientific research on these materials.
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Affiliation(s)
- Re Xia
- Key Laboratory of Hubei Province for Water Jet Theory and New Technology, Wuhan University, Wuhan 430072, China.
| | - Run Ni Wu
- Key Laboratory of Hubei Province for Water Jet Theory and New Technology, Wuhan University, Wuhan 430072, China.
| | - Yi Lun Liu
- State Key Laboratory for Strength and Vibration of Mechanical Structures, School of Aerospace Engineering, Xi'an Jiaotong University, Xi'an 710049, China.
| | - Xiao Yu Sun
- Department of Engineering Mechanics, School of Civil Engineering, Wuhan University, Wuhan 430072, China.
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22
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Yokoyama S, Hirose T, Matsuda K. Effects of Alkyl Chain Length and Hydrogen Bonds on the Cooperative Self-Assembly of 2-Thienyl-Type Diarylethenes at a Liquid/Highly Oriented Pyrolytic Graphite (HOPG) Interface. Chemistry 2015. [PMID: 26219631 DOI: 10.1002/chem.201500707] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
An appropriate understanding of the process of self-assembly is of critical importance to tailor nanostructured order on 2D surfaces with functional molecules. Photochromic compounds are promising candidates for building blocks of advanced photoresponsive surfaces. To investigate the relationship between molecular structure and the mechanism of ordering formation, 2-thienyl-type diarylethenes with various lengths of alkyl side chains linked through an amide or ester group were synthesized. Their self-assemblies at a liquid/solid interface were investigated by scanning tunneling microscopy (STM). The concentration dependence of the surface coverage was analyzed by using a cooperative model for a 2D surface based on two characteristic parameters: the nucleation equilibrium constant (Kn) and the elongation equilibrium constant (Ke). The following conclusions can be drawn. 1) The concentration at which a stable 2D molecular ordering is observed by STM exponentially decreases with increasing length of the alkyl chain. 2) Compounds bearing amide groups have higher degrees of cooperativity in self-assembly on 2D surfaces (i.e., σ, which is defined as Kn/Ke) than compounds with ester groups. 3) The self-assembly process of the open-ring isomer of an ester derivative is close to isodesmic, whereas that of the closed-ring isomer is cooperative because of the difference in equilibrium constants for the nucleation step (i.e., Kn) between the two isomers.
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Affiliation(s)
- Soichi Yokoyama
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510 (Japan)
| | - Takashi Hirose
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510 (Japan)
| | - Kenji Matsuda
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510 (Japan).
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23
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Song W, Martsinovich N, Heckl WM, Lackinger M. Thermodynamics of 4,4'-stilbenedicarboxylic acid monolayer self-assembly at the nonanoic acid-graphite interface. Phys Chem Chem Phys 2015; 16:13239-47. [PMID: 24870380 DOI: 10.1039/c4cp01147c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A direct calorimetric measurement of the overall enthalpy change associated with self-assembly of organic monolayers at the liquid-solid interface is for most systems of interest practically impossible. In previous work we proposed an adapted Born-Haber cycle for an indirect assessment of the overall enthalpy change by using terephthalic acid monolayers at the nonanoic acid-graphite interface as a model system. To this end, the sublimation enthalpy, dissolution enthalpy, the monolayer binding enthalpy in vacuum, and a dewetting enthalpy are combined to yield the total enthalpy change. In the present study the Born-Haber cycle is applied to 4,4'-stilbenedicarboxylic acid monolayers. A detailed comparison of these two aromatic dicarboxylic acids is used to evaluate and quantify the contribution of the organic backbone for stabilization of the monolayer at the nonanoic acid-graphite interface.
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Affiliation(s)
- W Song
- Department of Physics, Technische Universität München, James-Franck-Str. 1, 85748 Garching, Germany.
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24
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Ghijsens E, Adisoejoso J, Van Gorp H, Destoop I, Noguchi A, Ivasenko O, Tahara K, Van der Auweraer M, Tobe Y, De Feyter S. On the stability of surface-confined nanoporous molecular networks. J Chem Phys 2015; 142:101932. [DOI: 10.1063/1.4913657] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Elke Ghijsens
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven—University of Leuven, Celestijnenlaan 200 F, B-3001 Leuven, Belgium
| | - Jinne Adisoejoso
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven—University of Leuven, Celestijnenlaan 200 F, B-3001 Leuven, Belgium
| | - Hans Van Gorp
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven—University of Leuven, Celestijnenlaan 200 F, B-3001 Leuven, Belgium
| | - Iris Destoop
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven—University of Leuven, Celestijnenlaan 200 F, B-3001 Leuven, Belgium
| | - Aya Noguchi
- Graduate School of Engineering Science, Division of Frontier Materials Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Oleksandr Ivasenko
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven—University of Leuven, Celestijnenlaan 200 F, B-3001 Leuven, Belgium
| | - Kazukuni Tahara
- Graduate School of Engineering Science, Division of Frontier Materials Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Mark Van der Auweraer
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven—University of Leuven, Celestijnenlaan 200 F, B-3001 Leuven, Belgium
| | - Yoshito Tobe
- Graduate School of Engineering Science, Division of Frontier Materials Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Steven De Feyter
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven—University of Leuven, Celestijnenlaan 200 F, B-3001 Leuven, Belgium
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25
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Kasperski A, Szabelski P. Theoretical Modeling of Surface Confined Chiral Nanoporous Networks: Cruciform Molecules as Versatile Building Blocks. Chirality 2015; 27:397-404. [PMID: 25728050 DOI: 10.1002/chir.22437] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2014] [Accepted: 01/28/2015] [Indexed: 11/07/2022]
Abstract
Patterning of solid surfaces with functional organic molecules has been a convenient route to fabricate two-dimensional materials with programmed architecture and activities. One example is the chiral nanoporous networks that can be created via controlled self-assembly of star-shaped molecules under 2D confinement. In this contribution we use computer modeling to predict the formation of molecular networks in adsorbed overlayers comprising cruciform molecular building blocks equipped with discrete interaction centers. To that end, we employ the Monte Carlo simulation method combined with a coarse-grained representation of the adsorbed molecules which are treated as collections of interconnected segments. The interaction centers within the molecules are represented by active segments whose number and distribution are adjusted. Our particular focus is on those distributions that produce prochiral molecules able to occur in adsorbed configurations being mirror images of each other (surface enantiomers). We demonstrate that, depending on size, aspect ratio, and intramolecular distribution of active sites, the surface enantiomers can co-crystallize or segregate into extended homochiral domains with largely diversified nanosized cavities. The insights from our theoretical studies can be helpful in designing 2D chiral porous networks with potential applications in enantioselective adsorption and asymmetric heterogeneous catalysis.
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Affiliation(s)
- Adam Kasperski
- Department of Theoretical Chemistry, Maria-Curie Skłodowska University, Lublin, Poland
| | - Paweł Szabelski
- Department of Theoretical Chemistry, Maria-Curie Skłodowska University, Lublin, Poland
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26
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Woszczyk A, Szabelski P. Theoretical investigations of the 2D chiral segregation induced by external directional fields. RSC Adv 2015. [DOI: 10.1039/c5ra15192a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
Computer simulations demonstrate the possibility of inducing 2D chiral segregation using continuously adjustable external fields.
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Affiliation(s)
- Aleksandra Woszczyk
- Department of Theoretical Chemistry
- Maria-Curie Skłodowska University
- 20-031 Lublin
- Poland
| | - Paweł Szabelski
- Department of Theoretical Chemistry
- Maria-Curie Skłodowska University
- 20-031 Lublin
- Poland
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27
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Park KW, Adisoejoso J, Plas J, Hong J, Müllen K, De Feyter S. Self-assembly behavior of alkylated isophthalic acids revisited: concentration in control and guest-induced phase transformation. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:15206-11. [PMID: 25419987 DOI: 10.1021/la5040849] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The engineering of two-dimensional crystals by physisorption-based molecular self-assembly at the liquid-solid interface is a powerful method to functionalize and nanostructure surfaces. The formation of high-symmetry networks from low-symmetry building blocks is a particularly important target. Alkylated isophthalic acid (ISA) derivatives are early test systems, and it was demonstrated that to produce a so-called porous hexagonal packing of plane group p6, i.e., a regular array of nanowells, either short alkyl chains or the introduction of bulky groups within the chains were mandatory. After all, the van der Waals interactions between adjacent alkyl chains or alkyl chains and the surface would dominate the ideal hydrogen bonding between the carboxyl groups, and therefore, a close-packed lamella structure (plane group p2) was uniquely observed. In this contribution, we show two versatile approaches to circumvent this problem, which are based on well-known principles: the "concentration in control" and the "guest-induced transformation" methods. The successful application of these methods makes ISA suitable building blocks to engineer a porous pattern, in which the distance between the pores can be tuned with nanometer precision.
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Affiliation(s)
- Kwang-Won Park
- Division of Molecular Imaging and Photonics, Department of Chemistry, Katholieke Universiteit Leuven , Celestijnenlaan 200 F, 3001 Leuven, Belgium
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28
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Hu F, Gong Y, Zhang X, Xue J, Liu B, Lu T, Deng K, Duan W, Zeng Q, Wang C. Temperature-induced transitions of self-assembled phthalocyanine molecular nanoarrays at the solid-liquid interface: from randomness to order. NANOSCALE 2014; 6:4243-4249. [PMID: 24608185 DOI: 10.1039/c3nr06320h] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
A promising approach to create functional nanoarrays is supramolecular self-assembly at liquid-solid interfaces. In the present investigation, we report on the self-assembly of phthalocyanine arrays using triphenylene-2,6,10-tricarboxylic acid (H₃TTCA) as a molecular nanotemplate. Five different metastable arrays are achieved in the study, including a thermodynamically stable configuration. Scanning tunneling microscopy (STM) measurements and density function theory (DFT) calculations are utilized to reveal the formation mechanism of the molecular nanoarrays. In general, the transformation process of nanoarrays is regulated by the synergies of a template effect and thermodynamic balance.
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Affiliation(s)
- Fangyun Hu
- CAS Key Laboratory of Standardization and Measurement for Nanotechnology, National Centre for Nanoscience and Technology, Beijing 100190, China.
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29
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Saito N, Terakawa R, Yamaguchi M. Synthesis, π-face-selective aggregation, and π-face chiral recognition of configurationally stable C(3)-symmetric propeller-chiral molecules with a π-core. Chemistry 2014; 20:5601-7. [PMID: 24737294 DOI: 10.1002/chem.201400094] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Indexed: 11/08/2022]
Abstract
The C3 -symmetric propeller-chiral compounds (P,P,P)-1 and (M,M,M)-1 with planar π-cores perpendicular to the C3 -axis were synthesized in optically pure states. (P,P,P)-1 possesses two distinguishable propeller-chiral π-faces with rims of different heights named the (P/L)-face and (P/H)-face. Each face is configurationally stable because of the rigid structure of the helicenes contained in the π-core. (P,P,P)-1 formed dimeric aggregates in organic solutions as indicated by the results of (1) H NMR, CD, and UV/Vis spectroscopy and vapor pressure osmometry analyses. The (P/L)/(P/L) interactions were observed in the solid state by single-crystal X-ray analysis, and they were also predominant over the (P/H)/(P/H) and (P/L)/(P/H) interactions in solution, as indicated by the results of (1) H and 2D NMR spectroscopy analyses. The dimerization constant was obtained for a racemic mixture, which showed that the heterochiral (P,P,P)-1/(M,M,M)-1 interactions were much weaker than the homochiral (P,P,P)-1/(P,P,P)-1 interactions. The results indicated that the propeller-chiral (P/L)-face interacts with the (P/L)-face more strongly than with the (P/H)-face, (M/L)-face, and (M/H)-face. The study showed the π-face-selective aggregation and π-face chiral recognition of the configurationally stable propeller-chiral molecules.
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Affiliation(s)
- Nozomi Saito
- Department of Organic Chemistry, Graduate School of Pharmaceutical Sciences, Tohoku University, 6-3 Aoba, Sendai 980-8578 (Japan), Fax: (+81) 22-795-6811; Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, 6-3 Aoba, Sendai 980-8578 (Japan)
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30
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Zheng QN, Wang L, Zhong YW, Liu XH, Chen T, Yan HJ, Wang D, Yao JN, Wan LJ. Adaptive reorganization of 2D molecular nanoporous network induced by coadsorbed guest molecule. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:3034-3040. [PMID: 24628397 DOI: 10.1021/la5002418] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The ordered array of nanovoids in nanoporous networks, such as honeycomb, Kagome, and square, provides a molecular template for the accommodation of "guest molecules". Compared with the commonly studied guest molecules featuring high symmetry evenly incorporated into the template, guest molecules featuring lower symmetry are rare to report. Herein, we report the formation of a distinct patterned superlattice of guest molecules by selective trapping of guest molecules into the honeycomb network of trimesic acid (TMA). Two distinct surface patterns have been achieved by the guest inclusion induced adaptive reconstruction of a 2D molecular nanoporous network. The honeycomb networks can synergetically tune the arrangement upon inclusion of the guest molecules with different core size but similar peripherals groups, resulting in a trihexagonal Kagome or triangular patterns.
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Affiliation(s)
- Qing-Na Zheng
- Key Laboratory of Molecular Nanostructure and Nanotechnology and Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS) , Beijing 100190, P. R. China
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31
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Coenen MJJ, den Boer D, van den Bruele FJ, Habets T, Timmers KAAM, van der Maas M, Khoury T, Panduwinata D, Crossley MJ, Reimers JR, van Enckevort WJP, Hendriksen BLM, Elemans JAAW, Speller S. Polymorphism in porphyrin monolayers: the relation between adsorption configuration and molecular conformation. Phys Chem Chem Phys 2014; 15:12451-8. [PMID: 23620134 DOI: 10.1039/c3cp50829c] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Self-assembled monolayers of meso-5,10,15,20-tetrakis(undecyl)porphyrin copper(II) on a graphite/1-octanoic acid interface have been studied by Scanning Tunnelling Microscopy. Four distinct polymorphs were observed, varying in their unit cell size. Arrays of unit cells of the various polymorphs seamlessly connect to each other via shared unit cell vectors. The monolayers are not commensurate, but coincident with the underlying graphite substrate. The seamless transition between the polymorphs is proposed to be the result of an adaptation of the molecular conformations in the polymorphs and at the boundaries, which is enabled by the conformational freedom of the alkyl tails of these molecules.
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Affiliation(s)
- Michiel J J Coenen
- Radboud University Nijmegen, Institute for Molecules and Materials, Nijmegen, The Netherlands
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32
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Cao L, Xu L, Zhao D, Tahara K, Tobe Y, De Feyter S, Lei S. Efficient molecular recognition based on nonspecific van der Waals interaction at the solid/liquid interface. Chem Commun (Camb) 2014; 50:11946-9. [DOI: 10.1039/c4cc03658a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A surprising recognition phenomenon based on van der Waals interactions was observed, which proves that the design of the supramolecular assembly from its building blocks represents a highly promising and general strategy.
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Affiliation(s)
- Lili Cao
- Key Laboratory of Microsystems and Microstructures Manufacturing
- Ministry of Education
- Harbin Institute of Technology
- Harbin, People's Republic of China
| | - Lirong Xu
- Key Laboratory of Microsystems and Microstructures Manufacturing
- Ministry of Education
- Harbin Institute of Technology
- Harbin, People's Republic of China
| | - Dahui Zhao
- Department of Applied Chemistry and the Key Laboratory of Polymer Chemistry and Physics of the Ministry of Education
- College of Chemistry
- Peking University
- Beijing 100871, China
| | - Kazukuni Tahara
- Division of Frontier Materials Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka, Japan
| | - Yoshito Tobe
- Division of Frontier Materials Science
- Graduate School of Engineering Science
- Osaka University
- Toyonaka, Japan
| | - Steven De Feyter
- Division of Molecular and Nanomaterials
- Department of Chemistry
- KU Leuven – University of Leuven
- 3001 Leuven, Belgium
| | - Shengbin Lei
- Key Laboratory of Microsystems and Microstructures Manufacturing
- Ministry of Education
- Harbin Institute of Technology
- Harbin, People's Republic of China
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33
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Li B, Tahara K, Adisoejoso J, Vanderlinden W, Mali KS, De Gendt S, Tobe Y, De Feyter S. Self-assembled air-stable supramolecular porous networks on graphene. ACS NANO 2013; 7:10764-10772. [PMID: 24206021 DOI: 10.1021/nn4039047] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Functionalization and modification of graphene at the nanometer scale is desirable for many applications. Supramolecular assembly offers an attractive approach in this regard, as many organic molecules form well-defined patterns on surfaces such as graphite via physisorption. Here we show that ordered porous supramolecular networks with different pore sizes can be readily fabricated on different graphene substrates via self-assembly of dehydrobenzo[12]annulene (DBA) derivatives at the interface between graphene and an organic liquid. Molecular resolution scanning tunneling microscopy (STM) and atomic force microscopy (AFM) investigations reveal that the extended honeycomb networks are highly flexible and that they follow the topological features of the graphene surface without any discontinuity, irrespective of the step-edges present in the substrate underneath. We also demonstrate the stability of these networks under liquid as well as ambient air conditions. The robust yet flexible DBA network adsorbed on graphene surface is a unique platform for further functionalization and modification of graphene. Identical network formation irrespective of the substrate supporting the graphene layer and the level of surface roughness illustrates the versatility of these building blocks.
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Affiliation(s)
- Bing Li
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven-University of Leuven , Celestijnenlaan 200F, B-3001 Leuven, Belgium
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34
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Sakano T, Imaizumi Y, Hirose T, Matsuda K. Formation of Two-dimensionally Ordered Diarylethene Annulated Isomer at the Liquid/HOPG Interface upon In Situ UV Irradiation. CHEM LETT 2013. [DOI: 10.1246/cl.130705] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Takeshi Sakano
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University
| | - Yohei Imaizumi
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University
| | - Takashi Hirose
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University
| | - Kenji Matsuda
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University
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35
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Sirtl T, Song W, Eder G, Neogi S, Schmittel M, Heckl WM, Lackinger M. Solvent-dependent stabilization of metastable monolayer polymorphs at the liquid-solid interface. ACS NANO 2013; 7:6711-6718. [PMID: 23875955 DOI: 10.1021/nn4014577] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Self-assembly of 1,3,5-tris(4'-biphenyl-4"-carbonitrile)benzene monolayers was studied at the liquid-solid interface by scanning tunneling microscopy. Application of different fatty acid homologues as solvents revealed a solvent-induced polymorphism. Yet, tempering triggered irreversible phase transitions of the initially self-assembled monolayers, thereby indicating their metastability. Interestingly, in either case, the same thermodynamically more stable and more densely packed monolayer polymorph was obtained after thermal treatment, irrespective of the initial structure. Again, the same densely packed structure was obtained in complementary solvent-free experiments conducted under ultrahigh vacuum conditions. Thus, self-assembly of metastable polymorphs at room temperature is explained by adsorption of partially solvated species under kinetic control. The irreversible phase transitions are induced by thermal desolvation, that is, desorption of coadsorbed solvent molecules.
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Affiliation(s)
- Thomas Sirtl
- Department of Physics, Technische Universität München, James-Franck-Str 1, 85748 Garching, Germany
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Tschierske C. Entwicklung struktureller Komplexität durch Selbstorganisation in flüssigkristallinen Systemen. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201300872] [Citation(s) in RCA: 79] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Tschierske C. Development of structural complexity by liquid-crystal self-assembly. Angew Chem Int Ed Engl 2013; 52:8828-78. [PMID: 23934786 DOI: 10.1002/anie.201300872] [Citation(s) in RCA: 364] [Impact Index Per Article: 30.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Indexed: 11/09/2022]
Abstract
Since the discovery of the liquid-crystalline state of matter 125 years ago, this field has developed into a scientific area with many facets. This Review presents recent developments in the molecular design and self-assembly of liquid crystals. The focus is on new exciting soft-matter structures distinct from the usually observed nematic, smectic, and columnar phases. These new structures have enhanced complexity, including multicompartment and cellular structures, periodic and quasiperiodic arrays of spheres, and new emergent properties, such as ferroelctricity and spontaneous achiral symmetry-breaking. Comparisons are made with developments in related fields, such as self-assembled monolayers, multiblock copolymers, and nanoparticle arrays. Measures of structural complexity used herein are the size of the lattice, the number of distinct compartments, the dimensionality, and the logic depth of the resulting supramolecular structures.
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Affiliation(s)
- Carsten Tschierske
- Institut für Chemie, Organische Chemie, Martin-Luther-Universität Halle-Wittenberg, 06120 Halle Saale, Germany.
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Blunt MO, Adisoejoso J, Tahara K, Katayama K, Van der Auweraer M, Tobe Y, De Feyter S. Temperature-induced structural phase transitions in a two-dimensional self-assembled network. J Am Chem Soc 2013; 135:12068-75. [PMID: 23829544 DOI: 10.1021/ja405585s] [Citation(s) in RCA: 129] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Two-dimensional (2D) supramolecular self-assembly at liquid-solid interfaces is a thermodynamically complex process producing a variety of structures. The formation of multiple network morphologies from the same molecular building blocks is a common occurrence. We use scanning tunnelling microscopy (STM) to investigate a structural phase transition between a densely packed and a porous phase of an alkylated dehydrobenzo[12]annulene (DBA) derivative physisorbed at a solvent-graphite interface. The influence of temperature and concentration are studied and the results combined using a thermodynamic model to measure enthalpy and entropy changes associated with the transition. These experimental results are compared to corresponding values obtained from simulations and theoretical calculations. This comparison highlights the importance of considering the solvent when modeling porous self-assembled networks. The results also demonstrate the power of using structural phase transitions to study the thermodynamics of these systems and will have implications for the development of predictive models for 2D self-assembly.
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Affiliation(s)
- Matthew O Blunt
- Department of Chemistry, Division of Molecular Imaging and Photonics, Laboratory of Photochemistry and Spectroscopy, KU Leuven - University of Leuven, Celestijnenlaan 200 F B2404, B-3001 Leuven, Belgium.
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Ciesielski A, Szabelski PJ, Rżysko W, Cadeddu A, Cook TR, Stang PJ, Samorì P. Concentration-Dependent Supramolecular Engineering of Hydrogen-Bonded Nanostructures at Surfaces: Predicting Self-Assembly in 2D. J Am Chem Soc 2013; 135:6942-50. [DOI: 10.1021/ja4002025] [Citation(s) in RCA: 131] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Artur Ciesielski
- Nanochemistry Laboratory, ISIS & icFRC, Université de Strasbourg & CNRS, 8 allée Gaspard Monge, 67000 Strasbourg, France
| | | | | | - Andrea Cadeddu
- Nanochemistry Laboratory, ISIS & icFRC, Université de Strasbourg & CNRS, 8 allée Gaspard Monge, 67000 Strasbourg, France
| | - Timothy R. Cook
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake
City, Utah 84112, United States
| | - Peter J. Stang
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake
City, Utah 84112, United States
| | - Paolo Samorì
- Nanochemistry Laboratory, ISIS & icFRC, Université de Strasbourg & CNRS, 8 allée Gaspard Monge, 67000 Strasbourg, France
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Szabelski P, Rżysko W, Pańczyk T, Ghijsens E, Tahara K, Tobe Y, De Feyter S. Self-assembly of molecular tripods in two dimensions: structure and thermodynamics from computer simulations. RSC Adv 2013. [DOI: 10.1039/c3ra45342a] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Li Y, Liu C, Xie Y, Li X, Li X, Fan X, Deng K, Zeng Q, Wang C. Temperature-controlled self-assembling structure with selective guest-recognition at the liquid–solid interface. Phys Chem Chem Phys 2013; 15:125-8. [DOI: 10.1039/c2cp43244g] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Xu L, Yang L, Cao L, Li T, Chen S, Zhao D, Lei S, Ma J. Effect of bulky substituents on the self-assembly and mixing behavior of arylene ethynylene macrocycles at the solid/liquid interface. Phys Chem Chem Phys 2013; 15:11748-57. [DOI: 10.1039/c3cp51413g] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Kasperski A, Szabelski P. Two-dimensional molecular sieves: structure design by computer simulations. ADSORPTION 2012. [DOI: 10.1007/s10450-012-9451-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Szabelski P, Woszczyk A. Role of molecular orientational anisotropy in the chiral resolution of enantiomers in adsorbed overlayers. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012; 28:11095-11105. [PMID: 22747234 DOI: 10.1021/la301763k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Separation of chiral molecules using achiral inputs is an interesting alternative to traditional techniques based on the chiral recognition mechanism. In this article we propose a lattice gas Monte Carlo model of two-dimensional chiral segregation induced by breaking of molecular orientational symmetry. Simulations were performed on a square lattice for rigid chain molecules composed of four and five identical segments. Mirror-image flat chain conformations resulting in different enantiomeric pairs were considered for each probe molecule. The enantiomers were assumed to interact via short-ranged segment-segment interaction potential limited to nearest neighbors on the lattice. We considered two qualitatively different situations in which (1) the molecules were allowed to rotate on the surface and adopt any of the four planar orientations and (2) the rotation was blocked, so that only one planar orientation was possible. The results obtained for the racemic overlayers showed clearly that the orientational symmetry breaking can induce spontaneous segregation of the enantiomers into large enantiopure domains. However, this effect was observed only for molecules with sufficiently long linear fragment. In the case of kinked bulky molecules a mixed assembly was formed, demonstrating the role of molecular shape in the orientationally biased segregation of enantiomers in adsorbed films. The insights from this study can be useful in developing strategies for 2D chiral separations in which external directional fields are used.
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Affiliation(s)
- Paweł Szabelski
- Department of Theoretical Chemistry, Maria-Curie Skłodowska University, Lublin, Poland.
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Tobe Y. Formation and Control of Porous Two-Dimensional Molecular Self-Assembly at Solid-Liquid Interfaces. J SYN ORG CHEM JPN 2012. [DOI: 10.5059/yukigoseikyokaishi.70.1255] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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